Factsheet for TraesCS1A01G073600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G076400.1	Wheat	cytosol	76.28	82.37
TraesCS1A01G067700.1	Wheat	extracellular	34.44	40.06
TraesCS1A01G055600.1	Wheat	cytosol	33.16	40.0
TraesCS1A01G054800.1	Wheat	cytosol	57.4	38.66
TraesCS1A01G067000.1	Wheat	mitochondrion	63.52	34.78
TraesCS1A01G054500.1	Wheat	mitochondrion	68.11	34.23
TraesCS1A01G073800.1	Wheat	mitochondrion	28.57	33.63
TraesCS1A01G067600.1	Wheat	mitochondrion	69.64	33.58
TraesCS1A01G067800.1	Wheat	cytosol	31.63	33.16
TraesCS1A01G067400.1	Wheat	mitochondrion	69.64	33.09
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	60.46	33.05
TraesCS1A01G056000.1	Wheat	cytosol	33.67	32.84
TraesCS1A01G031600.1	Wheat	cytosol	55.36	32.78
TraesCS1A01G073700.1	Wheat	cytosol	31.89	32.47
TraesCS1A01G057300.1	Wheat	cytosol	59.44	32.45
TraesCS1A01G054700.2	Wheat	mitochondrion	66.84	32.27
TraesCS6A01G311600.1	Wheat	mitochondrion	68.62	32.18
TraesCS1A01G055800.1	Wheat	mitochondrion	63.27	32.17
TraesCS1A01G066600.1	Wheat	mitochondrion	19.64	29.28
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	27.81	28.84
TraesCS2A01G526200.1	Wheat	golgi	49.74	28.63
TraesCS2A01G531000.1	Wheat	golgi	48.98	28.28
KXG28799	Sorghum	plastid	53.57	27.63
TraesCS1A01G074000.1	Wheat	mitochondrion	19.13	26.5
Zm00001d007555_P001	Maize	plastid	54.34	26.17
Zm00001d007559_P001	Maize	plastid	54.08	25.95
Zm00001d007531_P001	Maize	plastid	53.83	25.92
TraesCS2A01G531100.1	Wheat	cytosol	37.5	25.83
Zm00001d007548_P001	Maize	plastid	53.57	25.8
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	16.58	25.69
Zm00001d007534_P001	Maize	plastid	50.77	25.61
KXG35774	Sorghum	cytosol, mitochondrion	30.87	25.58
TraesCS2A01G530600.1	Wheat	cytosol	49.49	25.36
TraesCS1A01G031700.1	Wheat	plastid	47.45	25.1
Os04t0349600-01	Rice	plastid	23.47	23.77
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	29.08	23.55
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	44.9	22.98
TraesCS1A01G055500.1	Wheat	mitochondrion	12.24	22.12
TraesCS6A01G015000.1	Wheat	mitochondrion	22.96	21.69
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	27.55	21.47
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	38.78	21.29
Os04t0351333-00	Rice	cytosol	47.19	21.05
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	26.79	20.55
Solyc06g007280.2.1	Tomato	cytosol	13.01	20.0
TraesCS6A01G014600.1	Wheat	cytosol	15.31	15.19
Solyc06g005220.2.1	Tomato	cytosol	14.29	13.79
PGSC0003DMT400025087	Potato	endoplasmic reticulum	17.35	13.74
KRH39054	Soybean	cytosol	16.84	13.28
VIT_14s0081g00110.t01	Wine grape	cytosol	16.58	13.24
KRH39057	Soybean	cytosol	16.58	13.08
AT1G63330.2	Thale cress	cytosol	18.62	13.06
PGSC0003DMT400025067	Potato	cytosol	15.82	13.03
KRH39112	Soybean	cytosol	16.33	12.88
TraesCS6A01G083000.1	Wheat	cytosol	14.8	12.72
KRH39072	Soybean	cytosol	16.07	12.7
KRH39004	Soybean	cytosol	16.07	12.68
KRH39074	Soybean	cytosol	16.07	12.68
VIT_12s0028g02320.t01	Wine grape	mitochondrion	15.31	12.58
Bra026884.1-P	Field mustard	cytosol	14.54	12.42
PGSC0003DMT400025074	Potato	cytosol	17.35	12.32
Bra026971.1-P	Field mustard	mitochondrion	19.64	12.24
Bra031731.1-P	Field mustard	mitochondrion	15.82	12.2
AT1G62670.1	Thale cress	mitochondrion	19.39	12.06
Bra026882.1-P	Field mustard	cytosol	16.33	11.98
KRH48615	Soybean	mitochondrion	16.58	11.93
AT1G63150.1	Thale cress	mitochondrion	19.13	11.92
AT1G63130.1	Thale cress	mitochondrion	19.13	11.9
AT1G63070.1	Thale cress	mitochondrion	17.86	11.86
PGSC0003DMT400052977	Potato	cytosol	11.73	11.83
AT3G22470.1	Thale cress	cytosol, mitochondrion	18.62	11.79
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.33	11.79
AT1G62930.1	Thale cress	plastid	18.88	11.76
AT1G62914.1	Thale cress	mitochondrion	15.82	11.74
AT1G63080.3	Thale cress	mitochondrion	18.37	11.73
KRH40513	Soybean	plastid	10.46	11.68
VIT_14s0081g00120.t01	Wine grape	plastid	17.35	11.66
AT1G62910.1	Thale cress	mitochondrion	18.62	11.55
KRH09084	Soybean	plastid	15.05	11.55
AT1G62590.1	Thale cress	mitochondrion	18.62	11.51
Bra028267.1-P	Field mustard	mitochondrion	18.37	11.5
VIT_14s0081g00270.t01	Wine grape	plastid	16.84	11.38
Bra016762.1-P	Field mustard	mitochondrion	17.6	11.37
Solyc06g007740.1.1	Tomato	cytosol	17.09	11.36
KRH41817	Soybean	mitochondrion	16.07	11.35
PGSC0003DMT400052971	Potato	mitochondrion	17.09	11.3
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	14.54	11.29
Bra026957.1-P	Field mustard	mitochondrion	17.35	11.28
PGSC0003DMT400008760	Potato	mitochondrion	16.84	11.26
PGSC0003DMT400008757	Potato	cytosol	14.29	11.24
KRH09121	Soybean	mitochondrion	15.31	11.24
Solyc06g007300.1.1	Tomato	extracellular	16.84	11.15
AT1G12300.1	Thale cress	mitochondrion	18.11	11.15
AT1G12620.1	Thale cress	cytosol, mitochondrion	17.6	11.11
Bra026954.1-P	Field mustard	mitochondrion	18.37	11.08
PGSC0003DMT400053185	Potato	mitochondrion	16.58	11.02
KRH17148	Soybean	mitochondrion	15.31	11.01
KRH39066	Soybean	cytosol	15.56	10.99
Bra026958.1-P	Field mustard	mitochondrion	17.86	10.99
VIT_14s0081g00280.t01	Wine grape	mitochondrion	17.86	10.95
VIT_14s0030g02280.t01	Wine grape	plastid	15.56	10.87
KRH09154	Soybean	mitochondrion	15.31	10.79
AT1G63400.1	Thale cress	cytosol, plastid	15.82	10.75
PGSC0003DMT400056665	Potato	mitochondrion	16.07	10.7
AT1G12700.2	Thale cress	cytosol	16.84	10.68
KRH08636	Soybean	cytosol	14.03	10.54
Bra036649.1-P	Field mustard	cytosol	10.46	10.49
Solyc04g080120.1.1	Tomato	extracellular	16.33	10.46
AT1G12775.1	Thale cress	cytosol, mitochondrion	17.09	10.4
PGSC0003DMT400056663	Potato	plastid	15.56	10.37
PGSC0003DMT400053182	Potato	cytosol	15.82	10.35
KRH39050	Soybean	mitochondrion	14.03	10.34
KRH08628	Soybean	plastid	14.54	10.33
KRH09097	Soybean	plastid	15.31	10.29
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	13.78	10.29
KRH31646	Soybean	cytosol	13.52	10.23
KRH08277	Soybean	plastid	14.8	10.23
AT1G64100.2	Thale cress	cytosol	20.92	10.17
Bra036651.1-P	Field mustard	mitochondrion	13.78	10.09
PGSC0003DMT400015293	Potato	mitochondrion	15.56	10.0
PGSC0003DMT400015298	Potato	mitochondrion	15.56	10.0
KRH08671	Soybean	cytosol, mitochondrion	14.03	9.95
KRH09095	Soybean	plastid	14.8	9.91
KRH25652	Soybean	cytosol, golgi	13.52	9.81
KRH09082	Soybean	cytosol	10.2	9.8
Bra027026.1-P	Field mustard	mitochondrion	13.01	9.75
KRH40400	Soybean	plastid	14.29	9.71
PGSC0003DMT400053556	Potato	mitochondrion	11.22	9.59
KRH08639	Soybean	mitochondrion, plastid	13.78	9.56
KRH12873	Soybean	cytosol	16.84	9.48
KRH08607	Soybean	cytosol	13.52	9.45
Bra026401.1-P	Field mustard	plastid	12.76	9.35
KRH08625	Soybean	plastid	13.52	9.2
AT4G26800.2	Thale cress	mitochondrion, plastid	11.99	9.14
AT5G16640.1	Thale cress	mitochondrion	11.73	9.13
AT1G64580.1	Thale cress	mitochondrion	11.99	8.99
KRH09085	Soybean	mitochondrion	16.07	8.95
AT5G41170.1	Thale cress	mitochondrion	11.99	8.92
AT1G62680.2	Thale cress	plastid	12.24	8.76
KRH08599	Soybean	cytosol, plastid	14.8	8.67
AT1G64583.1	Thale cress	mitochondrion	11.22	8.59
AT1G06580.1	Thale cress	mitochondrion	10.71	8.4
Bra027656.1-P	Field mustard	cytosol	20.15	8.4
Bra026836.1-P	Field mustard	cytosol, mitochondrion	10.46	8.35
Bra027636.1-P	Field mustard	cytosol	6.89	8.33
AT3G16710.1	Thale cress	mitochondrion	10.71	8.28
Bra025516.1-P	Field mustard	cytosol, mitochondrion	9.95	8.18
Bra021192.1-P	Field mustard	plastid	10.46	8.13
AT1G62720.1	Thale cress	mitochondrion	9.95	8.04
KRH39064	Soybean	cytosol	18.11	7.33
Bra027029.1-P	Field mustard	mitochondrion	4.08	6.58
Bra016758.1-P	Field mustard	plastid	18.37	6.21
Bra027726.1-P	Field mustard	mitochondrion	6.89	5.73
PGSC0003DMT400008759	Potato	cytosol	4.34	5.33
CDX68679	Canola	cytosol	1.53	5.22
VIT_14s0030g02260.t01	Wine grape	cytosol	5.61	4.97
Solyc06g007810.1.1	Tomato	cytosol	2.81	4.1
Bra006187.1-P	Field mustard	plastid	2.55	3.44

Protein Annotations

EnsemblPlants:TraesCS1A01G073600.1	EnsemblPlantsGene:TraesCS1A01G073600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SignalP:SignalP-noTM	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:57398470..57399723

Molecular Weight (calculated)

43849.2 Da

IEP (calculated)

8.360

GRAVY (calculated)

-0.090

Length

392 amino acids

Sequence
(BLAST)

001: MRCCCRARRP GLGLAFFGRL LRTGLRTDGV DAYALIKCFC LAKRTDEAVS VRLHRSQRAL GLLQMMWKEG GGCAPNVVAY STVIHGFCKE GKVSKACELF
101: NEMVQQGVKP NVVTYTQVID ALCKARAMDK AESFLRHMVD NDVRPNNVTY KCIIQGYSSL GWWEEAVKIF RETTSRGLIL DDVTRNSFVS SLCNHGRSKE
201: AAEIAHQIIE NGTTVSISTY GIILGELCRN DCTEEAIVLF HKLGAVDVKF DITIFNTMID AMYRVRRREE ANILFAAISA NGLVPNASTY RIMITNLLKE
301: GSMEEADHMF SSMETSGYAP SSVLLNDIIR MLLEKGEIVK AGNYLSKVDG KSISLEASTG LLMRHLFSTE GKYHEQIKSL PERYQYFGVR HS

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.