Factsheet for TraesCS1A01G057400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G057700.1	Wheat	cytosol	34.59	76.31
TraesCS1A01G055600.1	Wheat	cytosol	34.45	76.0
TraesCS1A01G073800.1	Wheat	mitochondrion	30.96	66.67
TraesCS1A01G054800.1	Wheat	cytosol	51.74	63.75
TraesCS1A01G056000.1	Wheat	cytosol	35.7	63.68
TraesCS1A01G054700.2	Wheat	mitochondrion	72.11	63.67
TraesCS1A01G066600.1	Wheat	mitochondrion	23.29	63.5
TraesCS1A01G054500.1	Wheat	mitochondrion	68.76	63.21
TraesCS1A01G055800.1	Wheat	mitochondrion	67.22	62.52
TraesCS1A01G067600.1	Wheat	mitochondrion	69.6	61.38
TraesCS1A01G055500.1	Wheat	mitochondrion	18.55	61.29
TraesCS1A01G067400.1	Wheat	mitochondrion	69.87	60.73
TraesCS1A01G067700.1	Wheat	extracellular	28.45	60.53
TraesCS1A01G073600.1	Wheat	mitochondrion	33.05	60.46
TraesCS1A01G057300.1	Wheat	cytosol	60.39	60.31
TraesCS1A01G067800.1	Wheat	cytosol	31.24	59.89
TraesCS1A01G073700.1	Wheat	cytosol	31.8	59.22
TraesCS1A01G067000.1	Wheat	mitochondrion	58.16	58.24
TraesCS6A01G311600.1	Wheat	mitochondrion	67.78	58.13
TraesCS1A01G074000.1	Wheat	mitochondrion	22.73	57.6
TraesCS1D01G057800.1	Wheat	mitochondrion	28.73	56.75
TraesCS1A01G031600.1	Wheat	cytosol	49.09	53.17
TraesCS2A01G531000.1	Wheat	golgi	47.84	50.52
TraesCS2A01G526200.1	Wheat	golgi	47.42	49.93
TraesCS2A01G530600.1	Wheat	cytosol	53.14	49.8
TraesCS1A01G031700.1	Wheat	plastid	51.33	49.66
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	35.15	49.32
TraesCS2A01G531100.1	Wheat	cytosol	38.77	48.86
Zm00001d007531_P001	Maize	plastid	55.37	48.77
Zm00001d007555_P001	Maize	plastid	55.37	48.77
Zm00001d007548_P001	Maize	plastid	55.09	48.53
Zm00001d007559_P001	Maize	plastid	55.09	48.35
Zm00001d007534_P001	Maize	plastid	52.3	48.26
KXG28799	Sorghum	plastid	50.63	47.76
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	47.28	44.26
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	22.73	43.12
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	29.99	42.74
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	28.73	42.56
KXG35774	Sorghum	cytosol, mitochondrion	27.75	42.07
TraesCS6A01G014600.1	Wheat	cytosol	22.87	41.52
Os04t0351333-00	Rice	cytosol	49.65	40.5
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	39.61	39.78
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	13.81	39.13
TraesCS6A01G015000.1	Wheat	mitochondrion	20.92	36.14
Os04t0349600-01	Rice	plastid	18.97	35.14
TraesCS6A01G083000.1	Wheat	cytosol	22.04	34.65
KRH39112	Soybean	cytosol	18.13	26.16
KRH39054	Soybean	cytosol	17.99	25.96
KRH09084	Soybean	plastid	18.41	25.83
KRH39074	Soybean	cytosol	17.71	25.55
Bra006187.1-P	Field mustard	plastid	10.32	25.43
KRH39004	Soybean	cytosol	17.43	25.15
KRH39057	Soybean	cytosol	17.43	25.15
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	17.43	24.75
KRH08636	Soybean	cytosol	17.85	24.52
KRH09154	Soybean	mitochondrion	18.83	24.28
VIT_14s0081g00110.t01	Wine grape	cytosol	16.6	24.24
AT1G63330.2	Thale cress	cytosol	18.83	24.15
KRH39072	Soybean	cytosol	16.6	23.99
Solyc06g007280.2.1	Tomato	cytosol	8.51	23.92
KRH17148	Soybean	mitochondrion	18.13	23.85
AT1G62670.1	Thale cress	mitochondrion	20.78	23.65
AT1G63130.1	Thale cress	mitochondrion	20.78	23.65
KRH39066	Soybean	cytosol	18.27	23.6
KRH08639	Soybean	mitochondrion, plastid	18.55	23.54
Solyc06g005220.2.1	Tomato	cytosol	13.25	23.4
KRH08671	Soybean	cytosol, mitochondrion	17.99	23.33
VIT_12s0028g02320.t01	Wine grape	mitochondrion	15.48	23.27
KRH09121	Soybean	mitochondrion	17.29	23.22
Solyc06g007810.1.1	Tomato	cytosol	8.65	23.13
KRH08628	Soybean	plastid	17.71	23.01
AT1G62930.1	Thale cress	plastid	20.08	22.89
KRH48615	Soybean	mitochondrion	17.29	22.75
KRH08607	Soybean	cytosol	17.71	22.64
PGSC0003DMT400052977	Potato	cytosol	12.27	22.62
KRH08277	Soybean	plastid	17.85	22.57
AT1G63400.1	Thale cress	cytosol, plastid	18.13	22.53
KRH40400	Soybean	plastid	18.13	22.53
PGSC0003DMT400008757	Potato	cytosol	15.62	22.49
PGSC0003DMT400025074	Potato	cytosol	17.29	22.46
AT5G16640.1	Thale cress	mitochondrion	15.76	22.42
VIT_14s0081g00270.t01	Wine grape	plastid	18.13	22.41
KRH31646	Soybean	cytosol	16.18	22.39
Solyc06g007740.1.1	Tomato	cytosol	18.41	22.37
PGSC0003DMT400008759	Potato	cytosol	9.9	22.26
Bra026884.1-P	Field mustard	cytosol	14.23	22.22
KRH40513	Soybean	plastid	10.88	22.22
KRH08625	Soybean	plastid	17.71	22.05
Bra021192.1-P	Field mustard	plastid	15.48	22.02
KRH41817	Soybean	mitochondrion	17.02	21.98
VIT_14s0081g00120.t01	Wine grape	plastid	17.85	21.96
Bra027636.1-P	Field mustard	cytosol	9.9	21.91
Bra026882.1-P	Field mustard	cytosol	16.32	21.91
AT1G63080.3	Thale cress	mitochondrion	18.69	21.82
AT1G62590.1	Thale cress	mitochondrion	19.25	21.77
CDX68679	Canola	cytosol	3.49	21.74
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	15.9	21.71
AT3G22470.1	Thale cress	cytosol, mitochondrion	18.69	21.65
KRH09097	Soybean	plastid	17.57	21.61
AT1G63070.1	Thale cress	mitochondrion	17.71	21.53
PGSC0003DMT400053185	Potato	mitochondrion	17.71	21.53
AT1G62910.1	Thale cress	mitochondrion	18.97	21.52
AT1G12300.1	Thale cress	mitochondrion	19.11	21.51
KRH25652	Soybean	cytosol, golgi	16.18	21.48
PGSC0003DMT400025067	Potato	cytosol	14.09	21.22
AT1G62914.1	Thale cress	mitochondrion	15.62	21.21
PGSC0003DMT400053182	Potato	cytosol	17.71	21.2
KRH09095	Soybean	plastid	17.29	21.2
AT1G63150.1	Thale cress	mitochondrion	18.55	21.14
KRH09082	Soybean	cytosol	11.99	21.08
KRH39050	Soybean	mitochondrion	15.62	21.05
PGSC0003DMT400025087	Potato	endoplasmic reticulum	14.5	21.01
Solyc06g007300.1.1	Tomato	extracellular	17.29	20.95
Bra036649.1-P	Field mustard	cytosol	11.3	20.72
AT1G12775.1	Thale cress	cytosol, mitochondrion	18.55	20.65
Bra016762.1-P	Field mustard	mitochondrion	17.43	20.59
Bra026971.1-P	Field mustard	mitochondrion	17.99	20.51
Bra026954.1-P	Field mustard	mitochondrion	18.55	20.46
Bra027658.1-P	Field mustard	cytosol, mitochondrion	15.48	20.44
AT1G12620.1	Thale cress	cytosol, mitochondrion	17.57	20.29
PGSC0003DMT400056663	Potato	plastid	16.6	20.24
Bra036651.1-P	Field mustard	mitochondrion	15.06	20.19
Bra028267.1-P	Field mustard	mitochondrion	17.57	20.13
Solyc04g080120.1.1	Tomato	extracellular	17.15	20.1
Bra026958.1-P	Field mustard	mitochondrion	17.85	20.09
PGSC0003DMT400056665	Potato	mitochondrion	16.46	20.03
VIT_14s0081g00280.t01	Wine grape	mitochondrion	17.85	20.03
AT3G16710.1	Thale cress	mitochondrion	14.09	19.92
AT1G62680.2	Thale cress	plastid	15.2	19.89
PGSC0003DMT400008760	Potato	mitochondrion	16.18	19.8
Bra026836.1-P	Field mustard	cytosol, mitochondrion	13.53	19.76
PGSC0003DMT400052971	Potato	mitochondrion	16.32	19.73
PGSC0003DMT400015293	Potato	mitochondrion	16.74	19.67
PGSC0003DMT400015298	Potato	mitochondrion	16.74	19.67
VIT_14s0030g02280.t01	Wine grape	plastid	15.34	19.61
AT1G64580.1	Thale cress	mitochondrion	14.23	19.5
Bra027026.1-P	Field mustard	mitochondrion	14.23	19.5
AT1G62720.1	Thale cress	mitochondrion	13.11	19.38
Bra031731.1-P	Field mustard	mitochondrion	13.67	19.29
AT1G06580.1	Thale cress	mitochondrion	13.39	19.2
AT1G64583.1	Thale cress	mitochondrion	13.39	18.75
Bra026401.1-P	Field mustard	plastid	13.81	18.5
KRH09085	Soybean	mitochondrion	18.13	18.47
AT1G12700.2	Thale cress	cytosol	15.9	18.45
Bra025516.1-P	Field mustard	cytosol, mitochondrion	12.13	18.24
AT1G64100.2	Thale cress	cytosol	20.5	18.24
KRH08599	Soybean	cytosol, plastid	16.88	18.09
AT4G26800.2	Thale cress	mitochondrion, plastid	12.83	17.9
AT5G41170.1	Thale cress	mitochondrion	13.11	17.84
Bra027029.1-P	Field mustard	mitochondrion	6.0	17.7
Bra026957.1-P	Field mustard	mitochondrion	14.78	17.58
PGSC0003DMT400053556	Potato	mitochondrion	11.02	17.21
VIT_14s0030g02260.t01	Wine grape	cytosol	10.32	16.7
Bra027726.1-P	Field mustard	mitochondrion	10.74	16.35
Bra027656.1-P	Field mustard	cytosol	20.64	15.73
KRH12873	Soybean	cytosol	13.81	14.22
KRH39064	Soybean	cytosol	18.69	13.83
Bra016758.1-P	Field mustard	plastid	17.85	11.04

Protein Annotations

EnsemblPlants:TraesCS1A01G057400.1	EnsemblPlantsGene:TraesCS1A01G057400	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:37509295..37512793

Molecular Weight (calculated)

78959.5 Da

IEP (calculated)

8.307

GRAVY (calculated)

0.065

Length

717 amino acids

Sequence
(BLAST)

001: MPSLHSTTPI SRIRIRLRRS RLFSSSATTP PPARSWSPHT AFAQATPVPE RSLNGFLTAL ARARDSATFR NGPALAIALF NRLCREEAGS RVAWPTACTY
101: TILMDCCCRA RRPDLGPAFL GRLLRTGLKT NQIVANTLLK CLCYAKRTDE AVNVLLHKMS ELGCVPDAIS YNTVLKSLCE DSRSQEALDL LWMVAKEGGV
201: GSLDVVSHST VIHGFFKEGE TGKACNLFHE MTHQGIVPNV MTYNLIIAAL CKARAMDKAE LILRQMVDNG VRPNTVTCSS LMSSLCKHGR SKEAAEIFDS
301: MTAKGLKPDI VAYSILLHGY ATEGCLADMI DLFNSMKNNG IEATCQVFNI LIGAYAKCGM MDEAMLIFTE MRRQGVCCIN GDAVKAKELV SEMMNKGIPR
401: PDIAFFTSII NSLCKEGRVM DAQNIFDLLV AIDERPNVIT FNSLIDGYCL VGEMDKVFRV LDAMKSVGAE PDIVTYNTLV NGYCRNGRID DDLALFREMP
501: CKGIKPDTVA YCIILDGLFH AGRIVVARKM FHEMIESGTT VGIPIYNITL KGLSRNNCAH EAIAMFQKLG AMNVKFDIVT LNTMINALYK VGKKEEAKDL
601: FAAISASGLV PNASTYSIMI INYLKEGSVE DANNIFSSME KSGIAPSSRL INYIIRIYLE KGEIAKAGDY LSKVDGKNIL LEASTTSLML SLFSRNGKYQ
701: ENIKLLPAKY QFFYGFG

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.