Factsheet for TraesCS1A01G054700.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G055300.1	Wheat	cytosol	70.32	92.39
TraesCS1A01G054500.1	Wheat	mitochondrion	86.33	89.87
TraesCS1A01G055600.1	Wheat	cytosol	32.88	82.15
TraesCS1A01G055800.1	Wheat	mitochondrion	75.62	79.64
TraesCS1A01G056000.1	Wheat	cytosol	37.81	76.37
TraesCS1A01G054800.1	Wheat	cytosol	54.56	76.12
TraesCS1A01G055500.1	Wheat	mitochondrion	20.32	76.04
TraesCS1B01G071600.1	Wheat	mitochondrion	78.69	75.35
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	63.67	72.11
TraesCS1A01G073800.1	Wheat	mitochondrion	29.43	71.77
TraesCS1A01G067600.1	Wheat	mitochondrion	70.69	70.6
TraesCS1A01G067700.1	Wheat	extracellular	29.06	70.03
TraesCS1A01G067400.1	Wheat	mitochondrion	69.95	68.85
TraesCS1A01G057300.1	Wheat	cytosol	60.59	68.52
TraesCS6A01G311600.1	Wheat	mitochondrion	69.21	67.22
TraesCS1A01G073700.1	Wheat	cytosol	31.77	67.01
TraesCS1A01G066600.1	Wheat	mitochondrion	21.67	66.92
TraesCS1A01G073600.1	Wheat	mitochondrion	32.27	66.84
TraesCS1A01G067000.1	Wheat	mitochondrion	58.5	66.34
TraesCS1A01G067800.1	Wheat	cytosol	30.05	65.24
TraesCS1A01G074000.1	Wheat	mitochondrion	22.66	65.02
TraesCS1A01G031600.1	Wheat	cytosol	48.52	59.52
TraesCS1A01G031700.1	Wheat	plastid	53.33	58.43
TraesCS2A01G530600.1	Wheat	cytosol	53.45	56.73
KXG28799	Sorghum	plastid	53.08	56.71
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	35.34	56.16
Zm00001d007531_P001	Maize	plastid	56.28	56.14
Zm00001d007548_P001	Maize	plastid	56.28	56.14
Zm00001d007559_P001	Maize	plastid	56.28	55.94
TraesCS2A01G531100.1	Wheat	cytosol	38.92	55.54
Zm00001d007555_P001	Maize	plastid	55.66	55.53
TraesCS2A01G531000.1	Wheat	golgi	46.43	55.52
TraesCS2A01G526200.1	Wheat	golgi	46.43	55.36
Zm00001d007534_P001	Maize	plastid	52.96	55.34
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	24.51	52.65
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	49.63	52.61
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	32.39	52.29
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	31.03	52.07
KXG35774	Sorghum	cytosol, mitochondrion	29.06	49.89
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	40.27	45.8
TraesCS6A01G014600.1	Wheat	cytosol	22.04	45.32
Os04t0351333-00	Rice	cytosol	48.77	45.05
Os04t0349600-01	Rice	plastid	21.31	44.7
TraesCS6A01G015000.1	Wheat	mitochondrion	22.78	44.58
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	13.55	43.48
TraesCS6A01G083000.1	Wheat	cytosol	23.15	41.23
Solyc06g007280.2.1	Tomato	cytosol	10.84	34.51
KRH39054	Soybean	cytosol	20.2	33.0
KRH39074	Soybean	cytosol	19.95	32.6
KRH39004	Soybean	cytosol	19.7	32.19
KRH39057	Soybean	cytosol	19.7	32.19
KRH39112	Soybean	cytosol	19.58	31.99
KRH39072	Soybean	cytosol	19.21	31.45
KRH17148	Soybean	mitochondrion	21.06	31.38
VIT_14s0081g00110.t01	Wine grape	cytosol	18.97	31.36
KRH09084	Soybean	plastid	19.46	30.92
VIT_12s0028g02320.t01	Wine grape	mitochondrion	17.98	30.61
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.72	30.1
AT1G63330.2	Thale cress	cytosol	20.69	30.05
Solyc06g005220.2.1	Tomato	cytosol	14.9	29.8
KRH08628	Soybean	plastid	20.2	29.71
KRH08636	Soybean	cytosol	19.09	29.69
Bra027636.1-P	Field mustard	cytosol	11.82	29.63
KRH40513	Soybean	plastid	12.81	29.63
KRH08277	Soybean	plastid	20.57	29.45
PGSC0003DMT400052977	Potato	cytosol	14.04	29.31
KRH39066	Soybean	cytosol	19.95	29.19
KRH48615	Soybean	mitochondrion	19.58	29.17
KRH08671	Soybean	cytosol, mitochondrion	19.83	29.11
KRH08639	Soybean	mitochondrion, plastid	20.07	28.85
Solyc06g007810.1.1	Tomato	cytosol	9.48	28.73
AT1G62670.1	Thale cress	mitochondrion	22.29	28.73
KRH08607	Soybean	cytosol	19.83	28.7
AT5G16640.1	Thale cress	mitochondrion	17.73	28.57
KRH08625	Soybean	plastid	20.2	28.47
KRH09154	Soybean	mitochondrion	19.46	28.42
VIT_14s0081g00120.t01	Wine grape	plastid	20.32	28.3
Bra026882.1-P	Field mustard	cytosol	18.6	28.28
KRH40400	Soybean	plastid	20.07	28.25
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	18.23	28.19
Bra027029.1-P	Field mustard	mitochondrion	8.37	27.98
KRH09082	Soybean	cytosol	14.04	27.94
KRH41817	Soybean	mitochondrion	19.09	27.93
PGSC0003DMT400008759	Potato	cytosol	10.96	27.9
Bra026884.1-P	Field mustard	cytosol	15.76	27.89
Bra006187.1-P	Field mustard	plastid	9.98	27.84
AT1G62930.1	Thale cress	plastid	21.55	27.82
AT1G62590.1	Thale cress	mitochondrion	21.55	27.6
KRH25652	Soybean	cytosol, golgi	18.35	27.59
KRH09121	Soybean	mitochondrion	18.1	27.53
VIT_14s0081g00270.t01	Wine grape	plastid	19.58	27.41
AT1G63400.1	Thale cress	cytosol, plastid	19.34	27.21
AT1G12300.1	Thale cress	mitochondrion	21.31	27.16
AT1G63130.1	Thale cress	mitochondrion	21.06	27.14
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.69	27.14
Bra036649.1-P	Field mustard	cytosol	13.05	27.11
PGSC0003DMT400025067	Potato	cytosol	15.89	27.1
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.5	27.07
PGSC0003DMT400025074	Potato	cytosol	18.35	26.99
Bra021192.1-P	Field mustard	plastid	16.75	26.98
KRH39050	Soybean	mitochondrion	17.61	26.88
Bra016762.1-P	Field mustard	mitochondrion	20.07	26.85
AT1G63070.1	Thale cress	mitochondrion	19.46	26.78
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.44	26.73
AT1G63080.3	Thale cress	mitochondrion	20.2	26.71
Bra026971.1-P	Field mustard	mitochondrion	20.69	26.71
PGSC0003DMT400008757	Potato	cytosol	16.38	26.71
Bra031731.1-P	Field mustard	mitochondrion	16.63	26.57
VIT_14s0030g02280.t01	Wine grape	plastid	18.35	26.56
Bra026958.1-P	Field mustard	mitochondrion	20.81	26.53
VIT_14s0081g00280.t01	Wine grape	mitochondrion	20.69	26.29
PGSC0003DMT400053185	Potato	mitochondrion	19.09	26.27
Bra028267.1-P	Field mustard	mitochondrion	20.2	26.2
Solyc06g007300.1.1	Tomato	extracellular	19.09	26.18
Bra027658.1-P	Field mustard	cytosol, mitochondrion	17.49	26.15
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.69	26.09
CDX68679	Canola	cytosol	3.69	26.09
AT1G63150.1	Thale cress	mitochondrion	20.2	26.07
Bra036651.1-P	Field mustard	mitochondrion	17.12	25.98
Solyc04g080120.1.1	Tomato	extracellular	19.58	25.98
AT1G62914.1	Thale cress	mitochondrion	16.87	25.95
Solyc06g007740.1.1	Tomato	cytosol	18.84	25.93
AT3G16710.1	Thale cress	mitochondrion	16.13	25.84
AT1G64580.1	Thale cress	mitochondrion	16.63	25.81
AT1G62910.1	Thale cress	mitochondrion	20.07	25.79
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.15	25.79
KRH09097	Soybean	plastid	18.47	25.73
AT1G12700.2	Thale cress	cytosol	19.58	25.73
KRH31646	Soybean	cytosol	16.38	25.68
KRH09095	Soybean	plastid	18.47	25.64
PGSC0003DMT400056665	Potato	mitochondrion	18.47	25.47
AT1G64583.1	Thale cress	mitochondrion	16.01	25.39
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.27	25.25
PGSC0003DMT400015293	Potato	mitochondrion	18.97	25.25
PGSC0003DMT400015298	Potato	mitochondrion	18.97	25.25
Bra026954.1-P	Field mustard	mitochondrion	20.2	25.23
AT1G62720.1	Thale cress	mitochondrion	15.02	25.15
PGSC0003DMT400052971	Potato	mitochondrion	18.35	25.13
Bra027026.1-P	Field mustard	mitochondrion	16.13	25.05
PGSC0003DMT400056663	Potato	plastid	18.1	25.0
Bra026957.1-P	Field mustard	mitochondrion	18.47	24.88
AT1G62680.2	Thale cress	plastid	16.63	24.64
Bra026401.1-P	Field mustard	plastid	16.13	24.49
AT1G06580.1	Thale cress	mitochondrion	15.02	24.4
AT5G41170.1	Thale cress	mitochondrion	15.76	24.29
PGSC0003DMT400008760	Potato	mitochondrion	17.49	24.23
PGSC0003DMT400053556	Potato	mitochondrion	13.67	24.18
PGSC0003DMT400053182	Potato	cytosol	17.73	24.04
VIT_14s0030g02260.t01	Wine grape	cytosol	12.81	23.48
KRH08599	Soybean	cytosol, plastid	19.34	23.47
Bra027726.1-P	Field mustard	mitochondrion	13.18	22.72
AT4G26800.2	Thale cress	mitochondrion, plastid	14.04	22.18
KRH09085	Soybean	mitochondrion	18.97	21.88
AT1G64100.2	Thale cress	cytosol	21.67	21.84
Bra027656.1-P	Field mustard	cytosol	22.78	19.66
KRH12873	Soybean	cytosol	16.13	18.82
KRH39064	Soybean	cytosol	21.67	18.16
Bra016758.1-P	Field mustard	plastid	19.46	13.63

Protein Annotations

EnsemblPlants:TraesCS1A01G054700.2	EnsemblPlantsGene:TraesCS1A01G054700	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:36185897..36188335

Molecular Weight (calculated)

89560.1 Da

IEP (calculated)

7.764

GRAVY (calculated)

0.030

Length

812 amino acids

Sequence
(BLAST)

001: MSNLRLLRRS SSSTSTPTSW SSRSWSPHAA FAAATERVRA GTLNQDDAHH LFDELLRQAN PVPGRSLNGF LAALARATSS AACIRDGPTL AIALFNRLCR
101: EQAGLRVAPL TIHTYGILMD CCCRASRPEL GLALFGRFLR TGLKTNEIVA STFLKCLCYA KRTDEAVNVL LHRMSELGCV PNAISYSIVL KSLCDNSMSL
201: RALDLLQMMA KEGGACSPNV VAYSTVIHGF FKESETGKAC NLFHEMMQQG VEPSVWTYSS IIDALCKARA MDKAELVLQQ MVNKGVQPNN VTYNCMIHGY
301: STSGQWKEAA KLLREMKSRG LIPDIVTCNS FLASLCKHGR SKEAAEFLDS MTAKGHKPDI VSYRILLHGY GTEGCFADMI DVFYSMESNG IAADCHVFNI
401: LINGYAKRGM TEEAMLIFTE MQGQGVSPDV VTYSIVIAAL SRMGRLTDAI EKFNEMTALE VQPDTTVYHS LIQGCCIDGY LVKAKELMFE MMNGGIPRPN
501: IVFFSSVINS LCKEGRVMDA HDVLDLVIGI GERPNVITFN SLIDGYCLVG NMDKAFKILD VMESVGVEPN VVTYSALLDG YSKNRRIDDA LTLFREMPRK
601: RIKPDTVTYG IMLDGLFRAG RTVAAMEMFH EMTESGTTVD IFIYNIILGG LCRNNCVDEA IALFQKLRAM NVKFNIEILN TMINAMYKVQ RKEEAKELFA
701: TISANGLVPN ESTYAVMIRN LLKGGAVEDA DNMFSSMDNS GIVPSSRLIN DIIRMLLKKG EIAKAGNYLS KVDGKSISLE ASTTSLLLSR KGKHQVDIKL
801: LPAKYQFFDG FG

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.