Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G137900.1 | |
| TraesCS4B01G148100.1 | |
| TraesCS4D01G153300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G62670.1 | TraesCS4A01G137900.1 | AT4G26630.1 | 25387881 |
| AT1G62670.1 | TraesCS4B01G148100.1 | AT4G26630.1 | 25387881 |
| AT1G62670.1 | TraesCS4D01G153300.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G089800.1 | Wheat | mitochondrion | 83.4 | 60.11 |
| Os10t0497432-01 | Rice | mitochondrion | 52.17 | 49.62 |
| TraesCS6A01G015000.1 | Wheat | mitochondrion | 80.63 | 49.16 |
| TraesCS1A01G073800.1 | Wheat | mitochondrion | 44.27 | 33.63 |
| TraesCS6A01G014800.1 | Wheat | cytosol, mitochondrion | 91.7 | 32.49 |
| TraesCS1A01G055500.1 | Wheat | mitochondrion | 27.67 | 32.26 |
| TraesCS1A01G074000.1 | Wheat | mitochondrion | 35.57 | 31.8 |
| Os08t0248400-01 | Rice | mitochondrion | 54.94 | 31.59 |
| Os08t0107700-01 | Rice | cytosol, mitochondrion | 46.64 | 31.55 |
| HORVU1Hr1G018190.2 | Barley | cytosol | 35.18 | 31.23 |
| TraesCS1A01G066600.1 | Wheat | mitochondrion | 32.02 | 30.8 |
| Os10t0495100-01 | Rice | cytosol, mitochondrion | 50.2 | 27.55 |
| Os10t0499500-01 | Rice | mitochondrion | 54.55 | 27.27 |
| OQU88594 | Sorghum | cytosol | 53.75 | 26.05 |
| Zm00001d018982_P001 | Maize | mitochondrion | 33.99 | 24.57 |
| HORVU6Hr1G002890.6 | Barley | cytosol, plastid | 76.68 | 24.4 |
| TraesCS1A01G067700.1 | Wheat | extracellular | 31.23 | 23.44 |
| EER95949 | Sorghum | mitochondrion | 60.08 | 22.93 |
| TraesCS6A01G101100.1 | Wheat | mitochondrion, plastid | 40.71 | 20.48 |
| TraesCS6A01G099300.1 | Wheat | cytosol, mitochondrion | 39.13 | 20.45 |
| Os08t0107800-01 | Rice | mitochondrion | 46.25 | 18.75 |
| Os10t0497366-00 | Rice | mitochondrion | 29.64 | 18.7 |
| TraesCS6A01G099100.1 | Wheat | cytosol, mitochondrion | 26.88 | 17.99 |
| Os10t0495200-01 | Rice | mitochondrion | 53.75 | 17.39 |
| Os10t0497300-01 | Rice | mitochondrion | 53.36 | 17.0 |
| KXG34536 | Sorghum | mitochondrion | 37.55 | 16.61 |
| TraesCS1A01G073600.1 | Wheat | mitochondrion | 25.69 | 16.58 |
| Zm00001d009733_P001 | Maize | cytosol | 50.2 | 15.97 |
| TraesCS1A01G055800.1 | Wheat | mitochondrion | 43.87 | 14.4 |
| TraesCS1A01G057400.1 | Wheat | mitochondrion, plastid | 39.13 | 13.81 |
| TraesCS1A01G054700.2 | Wheat | mitochondrion | 43.48 | 13.55 |
| Os08t0110200-01 | Rice | mitochondrion | 42.69 | 13.53 |
| TraesCS1A01G067600.1 | Wheat | mitochondrion | 42.69 | 13.28 |
| TraesCS6A01G311600.1 | Wheat | mitochondrion | 43.48 | 13.16 |
| Zm00001d009735_P001 | Maize | cytosol | 50.2 | 13.05 |
| TraesCS1A01G031700.1 | Wheat | plastid | 37.94 | 12.96 |
| AT1G62914.1 | Thale cress | mitochondrion | 26.88 | 12.88 |
| TraesCS1A01G067400.1 | Wheat | mitochondrion | 41.9 | 12.85 |
| Solyc06g007280.2.1 | Tomato | cytosol | 12.65 | 12.55 |
| TraesCS2A01G530300.1 | Wheat | mitochondrion, plastid | 25.3 | 12.52 |
| TraesCS1A01G054500.1 | Wheat | mitochondrion | 38.34 | 12.44 |
| AT1G12620.1 | Thale cress | cytosol, mitochondrion | 28.85 | 11.76 |
| AT1G63400.1 | Thale cress | cytosol, plastid | 26.48 | 11.61 |
| TraesCS2A01G530600.1 | Wheat | cytosol | 34.78 | 11.5 |
| AT3G22470.1 | Thale cress | cytosol, mitochondrion | 28.06 | 11.47 |
| AT1G62910.1 | Thale cress | mitochondrion | 28.46 | 11.39 |
| AT1G63070.1 | Thale cress | mitochondrion | 26.48 | 11.36 |
| AT1G63330.2 | Thale cress | cytosol | 24.9 | 11.27 |
| AT1G12300.1 | Thale cress | mitochondrion | 28.06 | 11.15 |
| AT1G62670.1 | Thale cress | mitochondrion | 27.67 | 11.11 |
| Bra028267.1-P | Field mustard | mitochondrion | 27.27 | 11.02 |
| AT1G63150.1 | Thale cress | mitochondrion | 27.27 | 10.97 |
| Bra026971.1-P | Field mustard | mitochondrion | 27.27 | 10.97 |
| TraesCS2A01G526200.1 | Wheat | golgi | 29.25 | 10.87 |
| AT1G62930.1 | Thale cress | plastid | 26.88 | 10.81 |
| AT1G63130.1 | Thale cress | mitochondrion | 26.88 | 10.79 |
| AT1G12775.1 | Thale cress | cytosol, mitochondrion | 27.27 | 10.71 |
| AT1G62590.1 | Thale cress | mitochondrion | 26.48 | 10.57 |
| Bra016762.1-P | Field mustard | mitochondrion | 25.3 | 10.54 |
| TraesCS1A01G067000.1 | Wheat | mitochondrion | 29.25 | 10.34 |
| Bra026954.1-P | Field mustard | mitochondrion | 26.48 | 10.31 |
| TraesCS1A01G057300.1 | Wheat | cytosol | 29.25 | 10.31 |
| TraesCS2A01G531000.1 | Wheat | golgi | 27.27 | 10.16 |
| AT1G63080.3 | Thale cress | mitochondrion | 24.51 | 10.1 |
| Bra026958.1-P | Field mustard | mitochondrion | 24.9 | 9.89 |
| VIT_12s0028g02320.t01 | Wine grape | mitochondrion | 18.58 | 9.85 |
| Bra031731.1-P | Field mustard | mitochondrion | 19.76 | 9.84 |
| VIT_14s0030g02280.t01 | Wine grape | plastid | 21.74 | 9.8 |
| KRH39050 | Soybean | mitochondrion | 20.16 | 9.59 |
| Bra027658.1-P | Field mustard | cytosol, mitochondrion | 20.55 | 9.58 |
| KRH09084 | Soybean | plastid | 18.97 | 9.39 |
| TraesCS1A01G031600.1 | Wheat | cytosol | 24.51 | 9.37 |
| Bra026882.1-P | Field mustard | cytosol | 19.76 | 9.36 |
| Solyc06g007740.1.1 | Tomato | cytosol | 21.74 | 9.32 |
| Solyc06g007300.1.1 | Tomato | extracellular | 21.74 | 9.29 |
| PGSC0003DMT400008757 | Potato | cytosol | 18.18 | 9.24 |
| PGSC0003DMT400056663 | Potato | plastid | 21.34 | 9.18 |
| AT1G64580.1 | Thale cress | mitochondrion | 18.97 | 9.18 |
| KRH48615 | Soybean | mitochondrion | 19.76 | 9.17 |
| VIT_14s0081g00270.t01 | Wine grape | plastid | 20.95 | 9.14 |
| KRH40513 | Soybean | plastid | 12.65 | 9.12 |
| PGSC0003DMT400025074 | Potato | cytosol | 19.76 | 9.06 |
| KRH39054 | Soybean | cytosol | 17.79 | 9.05 |
| AT1G06580.1 | Thale cress | mitochondrion | 17.79 | 9.0 |
| PGSC0003DMT400056665 | Potato | mitochondrion | 20.95 | 9.0 |
| KRH17148 | Soybean | mitochondrion | 19.37 | 8.99 |
| AT5G16640.1 | Thale cress | mitochondrion | 17.79 | 8.93 |
| VIT_14s0081g00120.t01 | Wine grape | plastid | 20.55 | 8.92 |
| KRH39004 | Soybean | cytosol | 17.39 | 8.85 |
| KRH08639 | Soybean | mitochondrion, plastid | 19.76 | 8.85 |
| PGSC0003DMT400053185 | Potato | mitochondrion | 20.55 | 8.81 |
| KRH08635 | Soybean | cytosol, golgi, mitochondrion, plastid | 17.39 | 8.71 |
| PGSC0003DMT400008760 | Potato | mitochondrion | 20.16 | 8.7 |
| KRH08628 | Soybean | plastid | 18.97 | 8.7 |
| PGSC0003DMT400053182 | Potato | cytosol | 20.55 | 8.68 |
| KRH39057 | Soybean | cytosol | 17.0 | 8.65 |
| KRH39074 | Soybean | cytosol | 17.0 | 8.65 |
| KRH41817 | Soybean | mitochondrion | 18.97 | 8.65 |
| KRH09154 | Soybean | mitochondrion | 18.97 | 8.63 |
| KRH08636 | Soybean | cytosol | 17.79 | 8.62 |
| AT1G64583.1 | Thale cress | mitochondrion | 17.39 | 8.59 |
| Os10t0501700-00 | Rice | cytosol | 15.41 | 8.59 |
| Bra021192.1-P | Field mustard | plastid | 17.0 | 8.53 |
| PGSC0003DMT400053556 | Potato | mitochondrion | 15.41 | 8.5 |
| KRH31646 | Soybean | cytosol | 17.39 | 8.49 |
| KRH39072 | Soybean | cytosol | 16.6 | 8.47 |
| AT1G12700.2 | Thale cress | cytosol | 20.55 | 8.41 |
| PGSC0003DMT400015293 | Potato | mitochondrion | 20.16 | 8.36 |
| PGSC0003DMT400015298 | Potato | mitochondrion | 20.16 | 8.36 |
| KRH08671 | Soybean | cytosol, mitochondrion | 18.18 | 8.32 |
| VIT_14s0081g00280.t01 | Wine grape | mitochondrion | 20.95 | 8.29 |
| KRH08277 | Soybean | plastid | 18.58 | 8.29 |
| KRH39066 | Soybean | cytosol | 18.18 | 8.29 |
| AT1G62720.1 | Thale cress | mitochondrion | 15.81 | 8.25 |
| KRH00678 | Soybean | endoplasmic reticulum, extracellular, plastid | 17.0 | 8.19 |
| Bra036649.1-P | Field mustard | cytosol | 12.65 | 8.18 |
| Solyc04g080120.1.1 | Tomato | extracellular | 19.76 | 8.17 |
| KRH08625 | Soybean | plastid | 18.58 | 8.16 |
| KRH40400 | Soybean | plastid | 18.58 | 8.15 |
| AT3G16710.1 | Thale cress | mitochondrion | 16.21 | 8.09 |
| KRH09121 | Soybean | mitochondrion | 17.0 | 8.05 |
| KRH39112 | Soybean | cytosol | 15.81 | 8.05 |
| Bra036651.1-P | Field mustard | mitochondrion | 17.0 | 8.04 |
| AT4G26800.2 | Thale cress | mitochondrion, plastid | 16.21 | 7.98 |
| KRH08607 | Soybean | cytosol | 17.39 | 7.84 |
| Bra027026.1-P | Field mustard | mitochondrion | 16.21 | 7.84 |
| AT1G64100.2 | Thale cress | cytosol | 24.9 | 7.82 |
| Bra026957.1-P | Field mustard | mitochondrion | 18.58 | 7.79 |
| PGSC0003DMT400052971 | Potato | mitochondrion | 18.18 | 7.76 |
| TraesCS1A01G054800.1 | Wheat | cytosol | 17.79 | 7.73 |
| KRH25652 | Soybean | cytosol, golgi | 16.21 | 7.59 |
| Bra025516.1-P | Field mustard | cytosol, mitochondrion | 14.23 | 7.55 |
| KRH09097 | Soybean | plastid | 17.39 | 7.55 |
| Bra026836.1-P | Field mustard | cytosol, mitochondrion | 14.62 | 7.54 |
| KRH09095 | Soybean | plastid | 17.39 | 7.52 |
| Bra027656.1-P | Field mustard | cytosol | 27.67 | 7.44 |
| AT5G41170.1 | Thale cress | mitochondrion | 15.41 | 7.4 |
| KRH08599 | Soybean | cytosol, plastid | 18.97 | 7.17 |
| Bra026401.1-P | Field mustard | plastid | 15.02 | 7.1 |
| PGSC0003DMT400025087 | Potato | endoplasmic reticulum | 13.83 | 7.07 |
| Bra026884.1-P | Field mustard | cytosol | 12.65 | 6.97 |
| Bra027726.1-P | Field mustard | mitochondrion | 12.65 | 6.79 |
| AT1G62680.2 | Thale cress | plastid | 14.62 | 6.75 |
| VIT_14s0081g00110.t01 | Wine grape | cytosol | 13.04 | 6.72 |
| KRH09085 | Soybean | mitochondrion | 18.58 | 6.68 |
| Solyc06g005220.2.1 | Tomato | cytosol | 10.28 | 6.4 |
| PGSC0003DMT400025067 | Potato | cytosol | 11.46 | 6.09 |
| Bra016758.1-P | Field mustard | plastid | 26.09 | 5.69 |
| KRH39064 | Soybean | cytosol | 19.76 | 5.16 |
| KRH12873 | Soybean | cytosol | 13.83 | 5.03 |
| OQU88581 | Sorghum | cytosol | 20.55 | 4.78 |
| TraesCS6A01G083000.1 | Wheat | cytosol | 6.32 | 3.51 |
| TraesCS2A01G531100.1 | Wheat | cytosol | 7.51 | 3.34 |
| KRH09082 | Soybean | cytosol | 5.14 | 3.19 |
| Bra027636.1-P | Field mustard | cytosol | 3.95 | 3.09 |
| PGSC0003DMT400052977 | Potato | cytosol | 4.35 | 2.83 |
| Bra006187.1-P | Field mustard | plastid | 1.58 | 1.37 |
| VIT_14s0030g02260.t01 | Wine grape | cytosol | 0.4 | 0.23 |
| Bra027029.1-P | Field mustard | mitochondrion | 0.0 | 0.0 |
| CDX68679 | Canola | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400008759 | Potato | cytosol | 0.0 | 0.0 |
| Solyc06g007810.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| TraesCS1A01G055600.1 | Wheat | cytosol | 0.0 | 0.0 |
| TraesCS1A01G056000.1 | Wheat | cytosol | 0.0 | 0.0 |
| TraesCS1A01G067800.1 | Wheat | cytosol | 0.0 | 0.0 |
| TraesCS1A01G073700.1 | Wheat | cytosol | 0.0 | 0.0 |
| TraesCS6A01G014600.1 | Wheat | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G014500.1 | EnsemblPlantsGene:TraesCS6A01G014500 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF302 |
| PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 | TIGRFAMs:TIGR00756 | MapMan:35.1 |
Description
No Description!
Coordinates
chr6A:+:7079617..7080378
Molecular Weight (calculated)
27726.2 Da
IEP (calculated)
7.132
GRAVY (calculated)
0.235
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRFVPVDR RILERNIKAR YHAGDIGTED ALNLFDELIQ VAGPSSVLAI NCLLTVVGRD CPALGVSLFN RVARAKVPPH NITYGILVDC CCRAGRLDLG
101: HAGMGHVIKL GFAAEAIVNF SHLLKAICAE EKTSYAMEIV LRIMPEFNCI PNIFSYSILL KGLCNEKRSQ EALELIHMMI DHGGSCQPNV VSYSTVLDGL
201: LKDGEVGKAY SLFCVMLQRG ISPNVVTCNS IISGMCKVHA MDKAEEVLQQ MTD
101: HAGMGHVIKL GFAAEAIVNF SHLLKAICAE EKTSYAMEIV LRIMPEFNCI PNIFSYSILL KGLCNEKRSQ EALELIHMMI DHGGSCQPNV VSYSTVLDGL
201: LKDGEVGKAY SLFCVMLQRG ISPNVVTCNS IISGMCKVHA MDKAEEVLQQ MTD
001: MQRSISLTAK RLFVHWNLQG IGNPPTVPSF FNLCGSGCWE RSFASASGDY REILRNRLSD IIKVDDAVDL FGDMVKSRPF PSIVEFNKLL SAVAKMNKFE
101: LVISLGEQMQ TLGISHDLYT YSIFINCFCR RSQLSLALAV LAKMMKLGYE PDIVTLSSLL NGYCHSKRIS DAVALVDQMV EMGYKPDTFT FTTLIHGLFL
201: HNKASEAVAL VDQMVQRGCQ PDLVTYGTVV NGLCKRGDID LALSLLKKME KGKIEADVVI YNTIIDGLCK YKHMDDALNL FTEMDNKGIR PDVFTYSSLI
301: SCLCNYGRWS DASRLLSDMI ERKINPNVVT FSALIDAFVK EGKLVEAEKL YDEMIKRSID PDIFTYSSLI NGFCMHDRLD EAKHMFELMI SKDCFPNVVT
401: YSTLIKGFCK AKRVEEGMEL FREMSQRGLV GNTVTYTTLI HGFFQARDCD NAQMVFKQMV SVGVHPNILT YNILLDGLCK NGKLAKAMVV FEYLQRSTME
501: PDIYTYNIMI EGMCKAGKVE DGWELFCNLS LKGVSPNVIA YNTMISGFCR KGSKEEADSL LKKMKEDGPL PNSGTYNTLI RARLRDGDRE ASAELIKEMR
601: SCGFAGDAST IGLVTNMLHD GRLDKSFLDM LS
101: LVISLGEQMQ TLGISHDLYT YSIFINCFCR RSQLSLALAV LAKMMKLGYE PDIVTLSSLL NGYCHSKRIS DAVALVDQMV EMGYKPDTFT FTTLIHGLFL
201: HNKASEAVAL VDQMVQRGCQ PDLVTYGTVV NGLCKRGDID LALSLLKKME KGKIEADVVI YNTIIDGLCK YKHMDDALNL FTEMDNKGIR PDVFTYSSLI
301: SCLCNYGRWS DASRLLSDMI ERKINPNVVT FSALIDAFVK EGKLVEAEKL YDEMIKRSID PDIFTYSSLI NGFCMHDRLD EAKHMFELMI SKDCFPNVVT
401: YSTLIKGFCK AKRVEEGMEL FREMSQRGLV GNTVTYTTLI HGFFQARDCD NAQMVFKQMV SVGVHPNILT YNILLDGLCK NGKLAKAMVV FEYLQRSTME
501: PDIYTYNIMI EGMCKAGKVE DGWELFCNLS LKGVSPNVIA YNTMISGFCR KGSKEEADSL LKKMKEDGPL PNSGTYNTLI RARLRDGDRE ASAELIKEMR
601: SCGFAGDAST IGLVTNMLHD GRLDKSFLDM LS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g62910 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ16]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.