Factsheet for Zm00001d009733_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013757_P010
Zm00001d033159_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	Zm00001d013757_P010	AT4G26630.1	25387881
AT1G62670.1	Zm00001d033159_P001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009735_P001	Maize	cytosol	96.6	78.93
Zm00001d018982_P001	Maize	mitochondrion	34.21	77.71
TraesCS6A01G014600.1	Wheat	cytosol	28.43	57.22
TraesCS6D01G017800.1	Wheat	cytosol	38.49	56.98
Os10t0497300-01	Rice	mitochondrion	55.47	55.54
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	49.81	55.46
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	49.43	54.97
TraesCS6B01G021600.1	Wheat	mitochondrion	49.31	54.75
Os10t0495200-01	Rice	mitochondrion	53.84	54.73
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	49.06	54.55
Os10t0497366-00	Rice	mitochondrion	27.42	54.36
Os10t0501700-00	Rice	cytosol	30.94	54.19
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	48.55	53.99
TraesCS6D01G017700.1	Wheat	plastid	36.1	53.75
Os10t0495100-01	Rice	cytosol, mitochondrion	30.82	53.15
HORVU1Hr1G018190.2	Barley	cytosol	18.87	52.63
Os08t0248400-01	Rice	mitochondrion	28.8	52.05
HORVU6Hr1G014310.1	Barley	mitochondrion	44.28	51.24
Os10t0497432-01	Rice	mitochondrion	17.11	51.13
TraesCSU01G089800.1	Wheat	mitochondrion	22.39	50.71
Os08t0107800-01	Rice	mitochondrion	39.75	50.64
TraesCSU01G090200.1	Wheat	cytosol	28.05	50.45
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	15.97	50.2
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	20.5	50.15
Os08t0110200-01	Rice	mitochondrion	49.94	49.75
Os10t0499500-01	Rice	mitochondrion	31.32	49.21
TraesCS6A01G083000.1	Wheat	cytosol	27.92	48.68
TraesCS6B01G114300.1	Wheat	cytosol	23.77	48.59
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	23.02	48.28
TraesCS6A01G015000.1	Wheat	mitochondrion	25.16	48.19
TraesCSU01G089700.1	Wheat	mitochondrion	28.8	47.51
TraesCS6D01G076500.1	Wheat	plastid	27.04	47.46
HORVU6Hr1G002890.6	Barley	cytosol, plastid	46.79	46.79
TraesCS6D01G047700.1	Wheat	mitochondrion	40.25	46.31
Os08t0107700-01	Rice	cytosol, mitochondrion	21.51	45.72
Zm00001d007531_P001	Maize	plastid	45.53	44.47
Zm00001d007534_P001	Maize	plastid	43.4	44.4
Zm00001d007548_P001	Maize	plastid	45.41	44.35
Zm00001d007559_P001	Maize	plastid	45.53	44.31
Zm00001d007555_P001	Maize	plastid	45.28	44.23
Solyc06g007280.2.1	Tomato	cytosol	12.08	37.65
KRH40513	Soybean	plastid	14.09	31.91
KRH39004	Soybean	cytosol	19.87	31.79
KRH39054	Soybean	cytosol	19.87	31.79
KRH39057	Soybean	cytosol	19.87	31.79
KRH39074	Soybean	cytosol	19.87	31.79
KRH39112	Soybean	cytosol	19.87	31.79
KRH39072	Soybean	cytosol	19.62	31.45
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.36	30.61
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.37	30.5
KRH08636	Soybean	cytosol	19.87	30.27
Bra027636.1-P	Field mustard	cytosol	12.33	30.25
PGSC0003DMT400052977	Potato	cytosol	14.72	30.08
KRH48615	Soybean	mitochondrion	20.5	29.91
Solyc06g005220.2.1	Tomato	cytosol	15.22	29.8
KRH39050	Soybean	mitochondrion	19.87	29.7
AT1G62914.1	Thale cress	mitochondrion	19.62	29.55
AT1G63330.2	Thale cress	cytosol	20.63	29.34
Bra036649.1-P	Field mustard	cytosol	14.34	29.16
KRH31646	Soybean	cytosol	18.99	29.15
KRH09084	Soybean	plastid	18.62	28.96
VIT_14s0081g00120.t01	Wine grape	plastid	21.13	28.82
VIT_14s0081g00110.t01	Wine grape	cytosol	17.74	28.72
Bra026882.1-P	Field mustard	cytosol	19.25	28.65
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	18.87	28.57
AT1G12620.1	Thale cress	cytosol, mitochondrion	22.26	28.5
KRH08639	Soybean	mitochondrion, plastid	20.25	28.5
AT1G63070.1	Thale cress	mitochondrion	21.13	28.47
KRH39066	Soybean	cytosol	19.87	28.47
VIT_14s0081g00270.t01	Wine grape	plastid	20.75	28.45
KRH09154	Soybean	mitochondrion	19.87	28.42
AT1G63130.1	Thale cress	mitochondrion	22.52	28.41
KRH08277	Soybean	plastid	20.25	28.4
KRH25652	Soybean	cytosol, golgi	19.25	28.33
PGSC0003DMT400008757	Potato	cytosol	17.74	28.31
Solyc06g007740.1.1	Tomato	cytosol	21.01	28.31
AT1G62930.1	Thale cress	plastid	22.39	28.3
KRH17148	Soybean	mitochondrion	19.37	28.26
KRH08671	Soybean	cytosol, mitochondrion	19.62	28.21
Solyc06g007300.1.1	Tomato	extracellular	21.01	28.21
KRH08625	Soybean	plastid	20.38	28.12
KRH08628	Soybean	plastid	19.5	28.08
KRH40400	Soybean	plastid	20.38	28.08
Bra036651.1-P	Field mustard	mitochondrion	18.87	28.04
KRH08607	Soybean	cytosol	19.75	27.99
AT1G63400.1	Thale cress	cytosol, plastid	20.25	27.9
Bra026884.1-P	Field mustard	cytosol	16.1	27.89
AT1G62910.1	Thale cress	mitochondrion	22.14	27.85
AT5G16640.1	Thale cress	mitochondrion	17.61	27.78
AT1G64583.1	Thale cress	mitochondrion	17.86	27.73
KRH41817	Soybean	mitochondrion	19.25	27.57
AT1G12300.1	Thale cress	mitochondrion	22.01	27.47
AT1G62670.1	Thale cress	mitochondrion	21.76	27.46
PGSC0003DMT400015293	Potato	mitochondrion	21.01	27.38
PGSC0003DMT400015298	Potato	mitochondrion	21.01	27.38
PGSC0003DMT400025074	Potato	cytosol	18.99	27.36
AT1G64580.1	Thale cress	mitochondrion	17.99	27.34
AT1G62720.1	Thale cress	mitochondrion	16.6	27.22
PGSC0003DMT400056665	Potato	mitochondrion	20.13	27.16
Bra027029.1-P	Field mustard	mitochondrion	8.3	27.16
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.23	27.04
AT1G63080.3	Thale cress	mitochondrion	20.88	27.04
PGSC0003DMT400052971	Potato	mitochondrion	20.13	26.98
KRH09121	Soybean	mitochondrion	18.11	26.97
AT1G62590.1	Thale cress	mitochondrion	21.38	26.81
Bra021192.1-P	Field mustard	plastid	16.98	26.79
PGSC0003DMT400053185	Potato	mitochondrion	19.87	26.78
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.24	26.7
Bra026958.1-P	Field mustard	mitochondrion	21.38	26.69
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.6	26.67
Bra027026.1-P	Field mustard	mitochondrion	17.48	26.58
AT1G63150.1	Thale cress	mitochondrion	21.01	26.55
PGSC0003DMT400056663	Potato	plastid	19.62	26.53
Bra006187.1-P	Field mustard	plastid	9.69	26.46
PGSC0003DMT400008760	Potato	mitochondrion	19.5	26.45
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.26	26.45
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.5	26.33
PGSC0003DMT400008759	Potato	cytosol	10.57	26.33
Solyc04g080120.1.1	Tomato	extracellular	20.25	26.31
AT1G62680.2	Thale cress	plastid	18.11	26.28
AT1G12775.1	Thale cress	cytosol, mitochondrion	21.26	26.24
Bra028267.1-P	Field mustard	mitochondrion	20.63	26.2
Bra016762.1-P	Field mustard	mitochondrion	20.0	26.19
Solyc06g007810.1.1	Tomato	cytosol	8.81	26.12
Bra026971.1-P	Field mustard	mitochondrion	20.63	26.07
AT1G06580.1	Thale cress	mitochondrion	16.23	25.8
Bra026954.1-P	Field mustard	mitochondrion	21.01	25.69
PGSC0003DMT400025067	Potato	cytosol	15.22	25.42
VIT_14s0030g02280.t01	Wine grape	plastid	17.86	25.31
KRH09082	Soybean	cytosol	12.96	25.25
PGSC0003DMT400053556	Potato	mitochondrion	14.47	25.05
AT5G41170.1	Thale cress	mitochondrion	16.6	25.05
KRH09097	Soybean	plastid	18.36	25.04
Bra031731.1-P	Field mustard	mitochondrion	15.97	25.0
PGSC0003DMT400053182	Potato	cytosol	18.74	24.87
AT3G16710.1	Thale cress	mitochondrion	15.85	24.85
KRH09095	Soybean	plastid	18.11	24.62
Bra026957.1-P	Field mustard	mitochondrion	18.62	24.54
AT4G26800.2	Thale cress	mitochondrion, plastid	15.85	24.51
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.97	24.24
Bra026401.1-P	Field mustard	plastid	15.97	23.74
AT1G12700.2	Thale cress	cytosol	18.36	23.62
Bra027726.1-P	Field mustard	mitochondrion	13.84	23.35
KRH08599	Soybean	cytosol, plastid	19.5	23.17
VIT_14s0030g02260.t01	Wine grape	cytosol	12.33	22.12
KRH09085	Soybean	mitochondrion	19.25	21.73
Bra027656.1-P	Field mustard	cytosol	25.28	21.36
AT1G64100.2	Thale cress	cytosol	21.64	21.34
CDX68679	Canola	cytosol	3.02	20.87
KRH12873	Soybean	cytosol	17.36	19.83
KRH39064	Soybean	cytosol	21.26	17.44
Bra016758.1-P	Field mustard	plastid	21.01	14.41

Protein Annotations

EnsemblPlants:Zm00001d009733_P001	EnsemblPlants:Zm00001d009733_T001	EnsemblPlantsGene:Zm00001d009733	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF302	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:AQK92513.1	SEG:seg
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0002218284	UniProt:K7V1S5	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr8:+:78509895..78512904

Molecular Weight (calculated)

89336.0 Da

IEP (calculated)

7.111

GRAVY (calculated)

0.001

Length

795 amino acids

Sequence
(BLAST)

001: MSRGVSSGRR TCLELERIIL NRHRSGSLGR EDALNLFDEL LPQARPASVH AFNSVLTVVA RADSSSSPRH SAALAVSLFN TMVRSGVNMM AAIIGILIRC
101: FCTVGRLDLA FAAFALFLKT GWRVQNVTLN QLIKGLCDGN RTDDAMDMVF RRMPELGYTP DVFSYNALIK GLCVEKKSQE ALELLIHMTA DGGYNCSPNV
201: VSYNTVIDGF FKEGEVDKAY FLFHEMMGQG LPPDVVTYNS LIDGLCKAQA MDKAVAILQH MFDKGVMPDT RTYNIMIRGY CSLGQLEEAV RLLKKMSGSG
301: LQPDVVTYSL LIQYYCKIGR CAEARSVFDS MVRKGQKPNS TIYHILLHGY ATKGALIDVR DLLDLMIRDG IPFEHRAFNI LICAYAKHGA VDKAMTAFTE
401: MRQNGLRPDV VSYSTVIHIL CKTGRVEDAV YHFNQMVSEG LSPNIISFTS LIHGLCSIGE WKKVEELAFE MINRGIHPDA IFMNTIMDNL CKEGRVVEAQ
501: DFFDMVIHIG VKPDVVSYNT LIDGYCFVGK MDESIKQLDR MVSIGLRPDS WTYNSLLNGY FKNGRVEDAL ALYREMFRKD VKFCAITSNI MLHGLFQAGR
601: IVAARELYMK MVDRGTQLRI ETYNTVLGGL CENSCVDEAL RMFEDLRSKE FELDVRTFSI VINALLKVGR IDEAKSLFSA MVLRGPVPDV ITYSLMIKSH
701: IEEGLLEESD NLFLSMEKNG CAADSHMLNI IVRRLLEKGD VRRAGTYLTK IDEKNFSLEA STAALLIPIV SEKKYQKEVK FLPEKYHSFM QPRDD

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.