Factsheet for TraesCSU01G090200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G089800.1	Wheat	mitochondrion	66.52	83.76
TraesCSU01G089700.1	Wheat	mitochondrion	88.01	80.71
HORVU1Hr1G018190.2	Barley	cytosol	50.23	77.89
Zm00001d018982_P001	Maize	mitochondrion	40.05	50.57
Os10t0495100-01	Rice	cytosol, mitochondrion	52.49	50.33
Os08t0248400-01	Rice	mitochondrion	50.0	50.23
Os10t0497432-01	Rice	mitochondrion	29.64	49.25
Os08t0107700-01	Rice	cytosol, mitochondrion	40.05	47.33
Os10t0497366-00	Rice	mitochondrion	39.37	43.39
HORVU6Hr1G002890.6	Barley	cytosol, plastid	76.92	42.77
Os10t0499500-01	Rice	mitochondrion	47.96	41.9
OQU88594	Sorghum	cytosol	49.09	41.57
EER95949	Sorghum	mitochondrion	56.33	37.56
KXG34536	Sorghum	mitochondrion	43.67	33.74
Os08t0107800-01	Rice	mitochondrion	47.29	33.49
Solyc06g007280.2.1	Tomato	cytosol	18.33	31.76
Os10t0495200-01	Rice	mitochondrion	54.07	30.56
Os10t0501700-00	Rice	cytosol	30.77	29.96
Os10t0497300-01	Rice	mitochondrion	52.49	29.22
Zm00001d009733_P001	Maize	cytosol	50.45	28.05
Os08t0110200-01	Rice	mitochondrion	46.83	25.94
KRH40513	Soybean	plastid	19.91	25.07
Zm00001d009735_P001	Maize	cytosol	50.91	23.12
VIT_12s0028g02320.t01	Wine grape	mitochondrion	24.89	23.06
AT1G62914.1	Thale cress	mitochondrion	26.7	22.35
KRH39004	Soybean	cytosol	24.21	21.53
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	25.11	21.14
KRH41817	Soybean	mitochondrion	26.47	21.08
KRH39050	Soybean	mitochondrion	25.34	21.05
KRH39054	Soybean	cytosol	23.53	20.93
KRH08636	Soybean	cytosol	24.66	20.88
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	23.76	20.79
KRH39057	Soybean	cytosol	23.3	20.72
Bra036649.1-P	Field mustard	cytosol	18.33	20.72
AT1G62930.1	Thale cress	plastid	29.41	20.67
AT1G63330.2	Thale cress	cytosol	26.02	20.57
VIT_14s0030g02280.t01	Wine grape	plastid	26.02	20.5
KRH31646	Soybean	cytosol	23.98	20.46
AT1G63400.1	Thale cress	cytosol, plastid	26.7	20.45
Solyc06g005220.2.1	Tomato	cytosol	18.78	20.44
KRH39072	Soybean	cytosol	22.62	20.16
KRH39074	Soybean	cytosol	22.62	20.12
Solyc06g007740.1.1	Tomato	cytosol	26.7	20.0
AT1G62910.1	Thale cress	mitochondrion	28.51	19.94
VIT_14s0081g00120.t01	Wine grape	plastid	26.24	19.9
Bra027029.1-P	Field mustard	mitochondrion	10.86	19.75
KRH08628	Soybean	plastid	24.66	19.75
KRH08639	Soybean	mitochondrion, plastid	25.11	19.65
AT1G63130.1	Thale cress	mitochondrion	27.83	19.52
AT1G64580.1	Thale cress	mitochondrion	23.08	19.5
KRH08277	Soybean	plastid	24.89	19.4
PGSC0003DMT400053556	Potato	mitochondrion	20.14	19.39
AT3G22470.1	Thale cress	cytosol, mitochondrion	27.15	19.39
KRH08671	Soybean	cytosol, mitochondrion	24.21	19.35
AT1G12620.1	Thale cress	cytosol, mitochondrion	27.15	19.32
PGSC0003DMT400008757	Potato	cytosol	21.72	19.28
AT5G16640.1	Thale cress	mitochondrion	21.95	19.25
AT1G62670.1	Thale cress	mitochondrion	27.38	19.21
AT1G63070.1	Thale cress	mitochondrion	25.57	19.15
VIT_14s0081g00270.t01	Wine grape	plastid	25.11	19.14
KRH39112	Soybean	cytosol	21.49	19.11
AT1G63150.1	Thale cress	mitochondrion	27.15	19.08
AT1G63080.3	Thale cress	mitochondrion	26.47	19.06
PGSC0003DMT400025074	Potato	cytosol	23.76	19.02
PGSC0003DMT400025087	Potato	endoplasmic reticulum	21.27	18.99
KRH09084	Soybean	plastid	21.95	18.98
KRH40400	Soybean	plastid	24.66	18.89
Bra026958.1-P	Field mustard	mitochondrion	27.15	18.84
AT1G62720.1	Thale cress	mitochondrion	20.59	18.76
KRH08607	Soybean	cytosol	23.76	18.72
PGSC0003DMT400025067	Potato	cytosol	20.14	18.7
AT1G12300.1	Thale cress	mitochondrion	26.92	18.68
Bra016762.1-P	Field mustard	mitochondrion	25.57	18.62
Bra026954.1-P	Field mustard	mitochondrion	27.38	18.62
AT1G62590.1	Thale cress	mitochondrion	26.7	18.61
Bra026971.1-P	Field mustard	mitochondrion	26.47	18.6
AT1G06580.1	Thale cress	mitochondrion	21.04	18.6
KRH39066	Soybean	cytosol	23.3	18.56
Bra026882.1-P	Field mustard	cytosol	22.4	18.54
PGSC0003DMT400052977	Potato	cytosol	16.29	18.51
PGSC0003DMT400056665	Potato	mitochondrion	24.66	18.51
Solyc06g007300.1.1	Tomato	extracellular	24.66	18.41
AT1G64583.1	Thale cress	mitochondrion	21.27	18.36
KRH48615	Soybean	mitochondrion	22.62	18.35
AT3G16710.1	Thale cress	mitochondrion	21.04	18.34
Bra036651.1-P	Field mustard	mitochondrion	22.17	18.32
PGSC0003DMT400053185	Potato	mitochondrion	24.43	18.31
AT4G26800.2	Thale cress	mitochondrion, plastid	21.27	18.29
KRH08625	Soybean	plastid	23.76	18.23
PGSC0003DMT400056663	Potato	plastid	24.21	18.2
VIT_14s0081g00280.t01	Wine grape	mitochondrion	26.24	18.15
VIT_14s0081g00110.t01	Wine grape	cytosol	20.14	18.13
Bra028267.1-P	Field mustard	mitochondrion	25.57	18.05
Bra025516.1-P	Field mustard	cytosol, mitochondrion	19.46	18.03
KRH17148	Soybean	mitochondrion	22.17	17.98
KRH09121	Soybean	mitochondrion	21.72	17.98
KRH25652	Soybean	cytosol, golgi	21.95	17.96
PGSC0003DMT400052971	Potato	mitochondrion	23.98	17.88
AT1G12775.1	Thale cress	cytosol, mitochondrion	26.02	17.86
KRH09154	Soybean	mitochondrion	22.4	17.81
PGSC0003DMT400008760	Potato	mitochondrion	23.08	17.41
Bra027026.1-P	Field mustard	mitochondrion	20.59	17.4
Bra027658.1-P	Field mustard	cytosol, mitochondrion	21.27	17.31
Bra021192.1-P	Field mustard	plastid	19.68	17.26
Bra026884.1-P	Field mustard	cytosol	17.65	16.99
Bra027636.1-P	Field mustard	cytosol	12.44	16.98
AT1G12700.2	Thale cress	cytosol	23.53	16.83
PGSC0003DMT400053182	Potato	cytosol	22.62	16.69
Bra031731.1-P	Field mustard	mitochondrion	19.0	16.54
KRH09097	Soybean	plastid	21.72	16.47
Bra026957.1-P	Field mustard	mitochondrion	22.4	16.42
KRH08599	Soybean	cytosol, plastid	24.66	16.29
KRH09095	Soybean	plastid	21.49	16.24
PGSC0003DMT400015293	Potato	mitochondrion	22.17	16.07
PGSC0003DMT400015298	Potato	mitochondrion	22.17	16.07
AT1G62680.2	Thale cress	plastid	19.91	16.06
Solyc04g080120.1.1	Tomato	extracellular	22.17	16.01
AT5G41170.1	Thale cress	mitochondrion	19.0	15.94
KRH09082	Soybean	cytosol	14.25	15.44
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.97	15.27
Bra026401.1-P	Field mustard	plastid	18.1	14.95
Bra027726.1-P	Field mustard	mitochondrion	15.84	14.86
KRH12873	Soybean	cytosol	22.4	14.22
PGSC0003DMT400008759	Potato	cytosol	10.18	14.11
AT1G64100.2	Thale cress	cytosol	25.57	14.02
OQU88581	Sorghum	cytosol	33.94	13.8
Bra006187.1-P	Field mustard	plastid	9.05	13.75
KRH09085	Soybean	mitochondrion	21.04	13.21
Solyc06g007810.1.1	Tomato	cytosol	7.24	11.94
Bra027656.1-P	Field mustard	cytosol	25.34	11.9
VIT_14s0030g02260.t01	Wine grape	cytosol	11.76	11.74
KRH39064	Soybean	cytosol	24.66	11.25
Bra016758.1-P	Field mustard	plastid	25.57	9.75
CDX68679	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCSU01G090200.1	EnsemblPlantsGene:TraesCSU01G090200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chrUn:-:80034344..80037566

Molecular Weight (calculated)

49118.1 Da

IEP (calculated)

6.383

GRAVY (calculated)

0.122

Length

442 amino acids

Sequence
(BLAST)

001: MSGHFVPVDR RILEQNIKAR YHAGDIGTED ALHLFDELLQ CAGSSSIRAI NYLVTTVGRD SPALGVSLFN RVASANVAPN SMTYTILVDC CCRAGRLDLG
101: FAAMGHIIKM GFAADAIVTF SHLLKAICAE KKTSYAMDIV LRIMPMFNCV PDNFSYNILF KGLCNERRSQ EALELIHMMV QHGGSCQPNV VSYNTVVDGL
201: LKEGEVGKAY TLFSEMLRQG ISPDVVTCTS IISGMCKVHA MDKAEEVLQQ MLDRRILPDA ATYNCLIHGY YLLGQCEEVD RIFKEMSRNG VQPNIVTYNI
301: QMDYLCKSGR CAEARKIFDS MIGLGQKPVV TTYSILLHGY AMEKSFHDMH CLIDLMVENG IAPNHPVYNI LISACAQEEM VSEVMHIFTK MRQQGLNPNV
401: ANYGVVVNLL SRIGRMDDAM SLFNQMITEG LAPDIIVFTP PY

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.