Factsheet for TraesCS6D01G047700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G076500.1	Wheat	plastid	45.88	69.98
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	69.03	66.71
TraesCS6D01G017800.1	Wheat	cytosol	47.76	61.45
TraesCS6D01G017700.1	Wheat	plastid	44.57	57.68
Os10t0497366-00	Rice	mitochondrion	30.68	52.87
OQU88594	Sorghum	cytosol	39.22	51.92
Os08t0248400-01	Rice	mitochondrion	32.71	51.36
Os10t0495100-01	Rice	cytosol, mitochondrion	33.57	50.33
Os10t0497432-01	Rice	mitochondrion	19.1	49.62
Zm00001d018982_P001	Maize	mitochondrion	25.04	49.43
EER95949	Sorghum	mitochondrion	45.73	47.66
Os08t0107700-01	Rice	cytosol, mitochondrion	25.62	47.33
Os10t0499500-01	Rice	mitochondrion	34.44	47.04
Os10t0501700-00	Rice	cytosol	30.25	46.04
Os08t0107800-01	Rice	mitochondrion	41.24	45.67
KXG34536	Sorghum	mitochondrion	37.19	44.93
TraesCS1D01G058000.1	Wheat	cytosol	26.34	44.83
TraesCS6D01G083300.1	Wheat	mitochondrion	26.92	41.7
Os10t0495200-01	Rice	mitochondrion	47.03	41.56
Os10t0497300-01	Rice	mitochondrion	47.18	41.06
Zm00001d009733_P001	Maize	cytosol	46.31	40.25
TraesCS6D01G083100.1	Wheat	cytosol	28.36	40.0
TraesCS7D01G231400.1	Wheat	cytosol, plastid	23.3	39.95
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	27.79	39.92
TraesCS6D01G083400.1	Wheat	mitochondrion	28.22	39.55
TraesCS1D01G057800.1	Wheat	mitochondrion	19.97	38.02
TraesCS1D01G076500.1	Wheat	mitochondrion	35.46	36.9
Os08t0110200-01	Rice	mitochondrion	42.55	36.84
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	35.02	36.72
TraesCS1D01G068600.1	Wheat	plastid	17.95	36.47
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	17.51	35.38
TraesCS2D01G532400.1	Wheat	cytosol	31.26	35.35
TraesCS6D01G290900.1	Wheat	mitochondrion	37.34	35.2
TraesCS1D01G058400.1	Wheat	cytosol	26.19	35.15
TraesCS1D01G068900.1	Wheat	mitochondrion	41.24	35.06
TraesCS1D01G068500.1	Wheat	mitochondrion	40.67	34.61
TraesCS1D01G068800.1	Wheat	plastid	40.81	34.56
TraesCS2D01G532600.1	Wheat	plastid	38.78	34.54
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	39.22	34.43
TraesCS1D01G056200.1	Wheat	mitochondrion	41.1	34.42
TraesCS1D01G076900.1	Wheat	plastid	32.71	34.4
TraesCS1D01G069100.1	Wheat	mitochondrion	31.98	34.37
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	34.59	34.29
TraesCS2D01G532100.1	Wheat	mitochondrion	34.3	34.25
TraesCS2D01G532300.1	Wheat	plastid	38.49	34.19
TraesCS1D01G055300.1	Wheat	cytosol	30.54	34.14
TraesCS2D01G532500.1	Wheat	plastid	33.43	33.97
TraesCS1D01G056700.1	Wheat	cytosol	29.52	33.61
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	32.42	33.28
TraesCS1D01G068400.1	Wheat	mitochondrion	39.51	33.17
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	37.92	33.08
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	10.85	32.89
Zm00001d009735_P001	Maize	cytosol	46.02	32.68
TraesCS1D01G056600.1	Wheat	mitochondrion	9.55	32.67
Solyc06g007280.2.1	Tomato	cytosol	12.01	32.55
VIT_12s0028g02320.t01	Wine grape	mitochondrion	20.41	29.56
TraesCS1D01G058500.1	Wheat	plastid	23.44	28.42
Bra027029.1-P	Field mustard	mitochondrion	9.99	28.4
Bra027636.1-P	Field mustard	cytosol	13.17	28.09
Solyc06g005220.2.1	Tomato	cytosol	16.5	28.08
KRH40513	Soybean	plastid	14.18	27.92
KRH31646	Soybean	cytosol	20.84	27.8
AT1G63330.2	Thale cress	cytosol	22.14	27.37
Bra036649.1-P	Field mustard	cytosol	15.48	27.37
TraesCS1D01G068700.1	Wheat	cytosol	17.37	27.33
KRH39050	Soybean	mitochondrion	20.98	27.26
KRH41817	Soybean	mitochondrion	21.85	27.21
KRH39004	Soybean	cytosol	19.39	26.96
TraesCS1D01G033000.1	Wheat	cytosol	15.63	26.73
KRH08636	Soybean	cytosol	20.12	26.63
KRH39054	Soybean	cytosol	19.1	26.56
PGSC0003DMT400052977	Potato	cytosol	14.91	26.48
AT1G63070.1	Thale cress	mitochondrion	22.58	26.44
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.25	26.34
Bra006187.1-P	Field mustard	plastid	11.0	26.12
TraesCS1D01G076700.1	Wheat	cytosol	12.59	26.05
TraesCS1D01G067600.1	Wheat	cytosol	13.75	26.03
Bra036651.1-P	Field mustard	mitochondrion	20.12	25.98
KRH39057	Soybean	cytosol	18.67	25.96
PGSC0003DMT400008757	Potato	cytosol	18.67	25.9
TraesCS1D01G076400.1	Wheat	cytosol	13.6	25.9
AT1G62670.1	Thale cress	mitochondrion	23.59	25.87
PGSC0003DMT400025087	Potato	endoplasmic reticulum	18.52	25.86
PGSC0003DMT400025067	Potato	cytosol	17.8	25.84
KRH09084	Soybean	plastid	19.1	25.83
AT1G63400.1	Thale cress	cytosol, plastid	21.56	25.82
AT1G62930.1	Thale cress	plastid	23.44	25.76
KRH39074	Soybean	cytosol	18.52	25.75
AT1G63080.3	Thale cress	mitochondrion	22.87	25.73
VIT_14s0081g00120.t01	Wine grape	plastid	21.71	25.73
Bra026884.1-P	Field mustard	cytosol	17.08	25.71
Bra026958.1-P	Field mustard	mitochondrion	23.59	25.59
KRH08628	Soybean	plastid	20.41	25.54
Bra026882.1-P	Field mustard	cytosol	19.68	25.47
Bra026971.1-P	Field mustard	mitochondrion	23.15	25.44
KRH39072	Soybean	cytosol	18.23	25.4
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.25	25.33
AT1G62910.1	Thale cress	mitochondrion	23.15	25.32
AT1G12620.1	Thale cress	cytosol, mitochondrion	22.72	25.28
AT5G16640.1	Thale cress	mitochondrion	18.38	25.2
KRH39112	Soybean	cytosol	18.09	25.15
KRH08671	Soybean	cytosol, mitochondrion	20.12	25.14
KRH08607	Soybean	cytosol	20.41	25.13
Solyc06g007740.1.1	Tomato	cytosol	21.42	25.08
VIT_14s0081g00110.t01	Wine grape	cytosol	17.8	25.05
PGSC0003DMT400025074	Potato	cytosol	19.97	25.0
KRH08639	Soybean	mitochondrion, plastid	20.41	24.96
KRH48615	Soybean	mitochondrion	19.68	24.95
AT1G63130.1	Thale cress	mitochondrion	22.72	24.92
AT3G22470.1	Thale cress	cytosol, mitochondrion	22.29	24.88
Bra021192.1-P	Field mustard	plastid	18.09	24.8
PGSC0003DMT400008759	Potato	cytosol	11.43	24.76
AT1G62590.1	Thale cress	mitochondrion	22.72	24.76
AT1G62720.1	Thale cress	mitochondrion	17.37	24.74
Solyc06g007300.1.1	Tomato	extracellular	21.13	24.66
Bra031731.1-P	Field mustard	mitochondrion	18.09	24.61
KRH39066	Soybean	cytosol	19.68	24.5
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.25	24.49
AT1G12300.1	Thale cress	mitochondrion	22.58	24.49
KRH08625	Soybean	plastid	20.41	24.48
AT1G64580.1	Thale cress	mitochondrion	18.52	24.47
PGSC0003DMT400056665	Potato	mitochondrion	20.84	24.45
KRH40400	Soybean	plastid	20.41	24.44
AT1G62914.1	Thale cress	mitochondrion	18.67	24.43
KRH17148	Soybean	mitochondrion	19.25	24.4
Bra016762.1-P	Field mustard	mitochondrion	21.42	24.38
CDX68679	Canola	cytosol	4.05	24.35
KRH08277	Soybean	plastid	19.97	24.34
AT1G62680.2	Thale cress	plastid	19.25	24.27
AT3G16710.1	Thale cress	mitochondrion	17.8	24.26
Solyc06g007810.1.1	Tomato	cytosol	9.41	24.25
VIT_14s0030g02280.t01	Wine grape	plastid	19.68	24.24
PGSC0003DMT400053185	Potato	mitochondrion	20.69	24.24
VIT_14s0081g00270.t01	Wine grape	plastid	20.26	24.14
KRH09154	Soybean	mitochondrion	19.39	24.1
Bra027026.1-P	Field mustard	mitochondrion	18.23	24.09
PGSC0003DMT400056663	Potato	plastid	20.41	23.98
KRH09121	Soybean	mitochondrion	18.52	23.97
Bra028267.1-P	Field mustard	mitochondrion	21.71	23.96
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.14	23.94
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.5	23.9
Bra026954.1-P	Field mustard	mitochondrion	22.43	23.85
KRH09082	Soybean	cytosol	14.04	23.77
AT1G63150.1	Thale cress	mitochondrion	21.56	23.69
KRH25652	Soybean	cytosol, golgi	18.38	23.52
PGSC0003DMT400008760	Potato	mitochondrion	19.83	23.38
PGSC0003DMT400053556	Potato	mitochondrion	15.48	23.31
AT1G64583.1	Thale cress	mitochondrion	17.22	23.24
AT1G06580.1	Thale cress	mitochondrion	16.79	23.2
AT5G41170.1	Thale cress	mitochondrion	17.66	23.15
PGSC0003DMT400052971	Potato	mitochondrion	19.83	23.1
AT1G12775.1	Thale cress	cytosol, mitochondrion	21.27	22.83
AT4G26800.2	Thale cress	mitochondrion, plastid	16.93	22.76
PGSC0003DMT400053182	Potato	cytosol	19.68	22.7
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.06	22.61
PGSC0003DMT400015293	Potato	mitochondrion	19.68	22.3
PGSC0003DMT400015298	Potato	mitochondrion	19.68	22.3
Bra027726.1-P	Field mustard	mitochondrion	15.05	22.08
Solyc04g080120.1.1	Tomato	extracellular	19.1	21.57
KRH09095	Soybean	plastid	18.23	21.54
AT1G12700.2	Thale cress	cytosol	19.25	21.52
OQU88581	Sorghum	cytosol	33.29	21.16
KRH09097	Soybean	plastid	17.8	21.1
KRH08599	Soybean	cytosol, plastid	20.41	21.08
TraesCS1D01G057700.1	Wheat	cytosol	9.84	20.92
Bra026401.1-P	Field mustard	plastid	16.06	20.75
Bra026957.1-P	Field mustard	mitochondrion	18.09	20.73
TraesCS2D01G532200.1	Wheat	cytosol	8.68	20.48
VIT_14s0030g02260.t01	Wine grape	cytosol	12.74	19.86
AT1G64100.2	Thale cress	cytosol	22.87	19.6
Bra027656.1-P	Field mustard	cytosol	24.31	17.85
KRH09085	Soybean	mitochondrion	17.66	17.33
KRH12873	Soybean	cytosol	16.5	16.38
KRH39064	Soybean	cytosol	19.83	14.14
Bra016758.1-P	Field mustard	plastid	22.0	13.11

Protein Annotations

EnsemblPlants:TraesCS6D01G047700.1	EnsemblPlantsGene:TraesCS6D01G047700	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:22182634..22184709

Molecular Weight (calculated)

77036.6 Da

IEP (calculated)

7.327

GRAVY (calculated)

0.104

Length

691 amino acids

Sequence
(BLAST)

001: MSRRAVPAGR RILEQNIKAR YRAGNIGTED ALHLFDELLP VARPSSVPAI NCLLIVVGRD CPALAVSLFN RIARTKVAPQ NITYGILVDC CCLAGRLDLG
101: FAAMGHIIKT GFAAGSVISF SHLLRAVCAE KKTSYGMDIV LRIMPELNCT PDVYSYSILF KGLCNEKRSQ EALELIHVMV EHGGSCQPNL VSYSTVIDGL
201: LKEGEVGKAY SLFCEMVHRG ISPDIVTYNS IISGMCKVHA MDKAEKVLQQ MFDREILPDT TTYTSLIHGY YSSGQCKEVE RVFEHMSING VQPNMITYNI
301: QMDYLCKSGR CAEARKIFDS MVSLGQKPSV TTYSILLHGY AMEKSFHDMH CLIDLMVENG ISPDHYVYNM LISACPKEEM FGEVMHIFTK MRQQGLNPNV
401: ANYGAVINLL SSAGKMDDAM CQFNQMITEG LAPDIVIFNT LISGFCTCGK WEKVHELFSE MLNRGIYPDI VSFTILMDRL CKSGRVIEAQ DMFDLMVRIG
501: VKPNIHTYGT LMHGYFFVRK VDEVRKLLGN MLSTGLKPDV FTYTILIDGY FKNGMIDDAS AVFTEMLEKK VEPSVITYRT MRYGLLNSGR TVAATKLYLR
601: MIDSGIHVDI AAYNIILRGL CKNNCVDGAL RMFQHLSSTN YPLEVGTYNI MISALVKGGR KEEATDLFDD MLAKGLVPDA VMYSLIKKGV V

Best Arabidopsis Sequence Match ( AT1G12620.1 )
(BLAST)

001: MRGLIQTRLL ETGTLRTALF LSCYGRVFSS VSDGKGKVSY RERLRSGIVD IKEDDAVDLF QEMTRSRPRP RLIDFSRLFS VVARTKQYDL VLDLCKQMEL
101: KGIAHNLYTL SIMINCCCRC RKLSLAFSAM GKIIKLGYEP DTVTFSTLIN GLCLEGRVSE ALELVDRMVE MGHKPTLITL NALVNGLCLN GKVSDAVLLI
201: DRMVETGFQP NEVTYGPVLK VMCKSGQTAL AMELLRKMEE RKIKLDAVKY SIIIDGLCKD GSLDNAFNLF NEMEIKGFKA DIIIYTTLIR GFCYAGRWDD
301: GAKLLRDMIK RKITPDVVAF SALIDCFVKE GKLREAEELH KEMIQRGISP DTVTYTSLID GFCKENQLDK ANHMLDLMVS KGCGPNIRTF NILINGYCKA
401: NLIDDGLELF RKMSLRGVVA DTVTYNTLIQ GFCELGKLEV AKELFQEMVS RRVRPDIVSY KILLDGLCDN GEPEKALEIF EKIEKSKMEL DIGIYNIIIH
501: GMCNASKVDD AWDLFCSLPL KGVKPDVKTY NIMIGGLCKK GSLSEADLLF RKMEEDGHSP NGCTYNILIR AHLGEGDATK SAKLIEEIKR CGFSVDASTV
601: KMVVDMLSDG RLKKSFLDML S

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12620 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASZ8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.