Factsheet for TraesCS6D01G290900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G311600.1	Wheat	mitochondrion	94.13	82.54
HORVU6Hr1G076780.7	Barley	mitochondrion	87.99	78.28
TraesCS6B01G341800.2	Wheat	cytosol	38.61	70.93
TraesCS1D01G068600.1	Wheat	plastid	32.33	69.71
TraesCS1D01G058000.1	Wheat	cytosol	38.34	69.21
TraesCS1D01G057800.1	Wheat	mitochondrion	33.7	68.04
TraesCS1D01G058400.1	Wheat	cytosol	46.38	66.02
TraesCS1D01G069100.1	Wheat	mitochondrion	56.89	64.85
TraesCS1D01G056600.1	Wheat	mitochondrion	17.87	64.85
TraesCS1D01G068900.1	Wheat	mitochondrion	70.94	63.96
TraesCS1D01G068400.1	Wheat	mitochondrion	71.76	63.91
TraesCS1D01G068500.1	Wheat	mitochondrion	70.4	63.55
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	29.33	62.87
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	19.37	62.28
TraesCS1D01G068800.1	Wheat	plastid	68.49	61.52
TraesCS1D01G076700.1	Wheat	cytosol	27.97	61.38
TraesCS1D01G056200.1	Wheat	mitochondrion	67.39	59.88
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	56.89	59.83
TraesCS1D01G076500.1	Wheat	mitochondrion	54.02	59.64
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	54.02	58.84
TraesCS1D01G058500.1	Wheat	plastid	45.29	58.25
TraesCS1D01G055300.1	Wheat	cytosol	48.16	57.12
TraesCS1D01G056700.1	Wheat	cytosol	46.25	55.85
TraesCS1D01G068700.1	Wheat	cytosol	33.42	55.81
TraesCS1D01G076900.1	Wheat	plastid	48.98	54.64
TraesCS6D01G083300.1	Wheat	mitochondrion	32.33	53.14
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	56.07	51.89
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	55.66	51.84
TraesCS6D01G083400.1	Wheat	mitochondrion	34.79	51.72
TraesCS1D01G076400.1	Wheat	cytosol	25.51	51.52
TraesCS7D01G231400.1	Wheat	cytosol, plastid	27.83	50.62
TraesCS6D01G083100.1	Wheat	cytosol	33.83	50.61
KXG28799	Sorghum	plastid	52.39	50.53
Zm00001d007548_P001	Maize	plastid	55.53	50.0
Zm00001d007559_P001	Maize	plastid	55.66	49.94
TraesCS1D01G067600.1	Wheat	cytosol	24.83	49.86
Zm00001d007531_P001	Maize	plastid	55.12	49.63
Zm00001d007555_P001	Maize	plastid	54.98	49.51
Zm00001d007534_P001	Maize	plastid	52.39	49.42
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	32.06	48.86
TraesCS2D01G532600.1	Wheat	plastid	51.71	48.84
TraesCS2D01G532300.1	Wheat	plastid	51.43	48.46
TraesCS1D01G057700.1	Wheat	cytosol	21.28	48.0
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	43.11	47.95
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	49.52	47.39
TraesCS2D01G532400.1	Wheat	cytosol	39.15	46.97
TraesCS2D01G532500.1	Wheat	plastid	43.52	46.91
TraesCS2D01G532100.1	Wheat	mitochondrion	43.11	45.66
Os04t0349600-01	Rice	plastid	23.19	43.93
TraesCS1D01G033000.1	Wheat	cytosol	23.87	43.32
KXG35774	Sorghum	cytosol, mitochondrion	27.83	43.13
TraesCS6D01G017800.1	Wheat	cytosol	30.01	40.97
TraesCS6D01G076500.1	Wheat	plastid	25.1	40.62
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	37.93	38.88
Os04t0351333-00	Rice	cytosol	45.02	37.54
TraesCS2D01G532200.1	Wheat	cytosol	15.01	37.54
TraesCS6D01G047700.1	Wheat	mitochondrion	35.2	37.34
TraesCS6D01G017700.1	Wheat	plastid	26.74	36.7
Solyc06g007280.2.1	Tomato	cytosol	11.87	34.12
VIT_12s0028g02320.t01	Wine grape	mitochondrion	21.42	32.91
KRH39074	Soybean	cytosol	21.83	32.19
KRH39054	Soybean	cytosol	21.42	31.59
KRH39057	Soybean	cytosol	21.15	31.19
KRH39004	Soybean	cytosol	20.87	30.78
KRH39112	Soybean	cytosol	20.87	30.78
KRH39072	Soybean	cytosol	20.74	30.65
Bra027636.1-P	Field mustard	cytosol	13.51	30.56
VIT_14s0081g00110.t01	Wine grape	cytosol	20.33	30.35
KRH40513	Soybean	plastid	14.19	29.63
Solyc06g005220.2.1	Tomato	cytosol	16.37	29.56
KRH09154	Soybean	mitochondrion	22.37	29.5
KRH17148	Soybean	mitochondrion	21.69	29.17
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.05	29.11
KRH48615	Soybean	mitochondrion	21.28	28.62
KRH08628	Soybean	plastid	21.56	28.62
KRH08277	Soybean	plastid	22.1	28.57
KRH08671	Soybean	cytosol, mitochondrion	21.56	28.57
Bra006187.1-P	Field mustard	plastid	11.32	28.52
KRH08639	Soybean	mitochondrion, plastid	21.96	28.5
KRH09084	Soybean	plastid	19.78	28.38
KRH08636	Soybean	cytosol	20.05	28.16
VIT_14s0081g00120.t01	Wine grape	plastid	22.37	28.13
KRH39066	Soybean	cytosol	21.15	27.93
KRH08607	Soybean	cytosol	21.28	27.81
AT5G16640.1	Thale cress	mitochondrion	19.1	27.78
VIT_14s0081g00270.t01	Wine grape	plastid	21.96	27.76
AT1G63400.1	Thale cress	cytosol, plastid	21.83	27.73
PGSC0003DMT400008759	Potato	cytosol	12.01	27.59
KRH40400	Soybean	plastid	21.69	27.56
KRH41817	Soybean	mitochondrion	20.74	27.39
AT1G63330.2	Thale cress	cytosol	20.87	27.37
Bra036649.1-P	Field mustard	cytosol	14.6	27.37
PGSC0003DMT400008757	Potato	cytosol	18.55	27.31
PGSC0003DMT400052977	Potato	cytosol	14.46	27.25
Solyc06g007810.1.1	Tomato	cytosol	9.96	27.24
KRH08625	Soybean	plastid	21.28	27.08
KRH25652	Soybean	cytosol, golgi	19.78	26.85
Bra026884.1-P	Field mustard	cytosol	16.78	26.8
Bra021192.1-P	Field mustard	plastid	18.42	26.79
Bra026882.1-P	Field mustard	cytosol	19.51	26.78
KRH09082	Soybean	cytosol	14.87	26.72
KRH39050	Soybean	mitochondrion	19.37	26.69
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	18.96	26.48
AT1G62670.1	Thale cress	mitochondrion	22.65	26.35
VIT_14s0030g02280.t01	Wine grape	plastid	20.05	26.2
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.78	26.13
PGSC0003DMT400053185	Potato	mitochondrion	21.01	26.1
KRH09121	Soybean	mitochondrion	18.96	26.03
PGSC0003DMT400056663	Potato	plastid	20.87	26.02
AT3G22470.1	Thale cress	cytosol, mitochondrion	21.96	26.01
Bra036651.1-P	Field mustard	mitochondrion	18.96	25.98
AT1G62720.1	Thale cress	mitochondrion	17.19	25.98
PGSC0003DMT400056665	Potato	mitochondrion	20.87	25.98
AT1G62914.1	Thale cress	mitochondrion	18.69	25.95
AT1G63080.3	Thale cress	mitochondrion	21.69	25.9
AT1G63130.1	Thale cress	mitochondrion	22.24	25.87
Bra016762.1-P	Field mustard	mitochondrion	21.42	25.86
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.78	25.79
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.1	25.78
AT1G64583.1	Thale cress	mitochondrion	18.01	25.78
Solyc06g007740.1.1	Tomato	cytosol	20.74	25.76
AT1G62930.1	Thale cress	plastid	22.1	25.76
KRH31646	Soybean	cytosol	18.14	25.68
PGSC0003DMT400025074	Potato	cytosol	19.24	25.54
PGSC0003DMT400025087	Potato	endoplasmic reticulum	17.19	25.45
AT1G64580.1	Thale cress	mitochondrion	18.14	25.43
AT1G12620.1	Thale cress	cytosol, mitochondrion	21.42	25.28
AT1G12300.1	Thale cress	mitochondrion	21.96	25.27
AT1G63070.1	Thale cress	mitochondrion	20.33	25.25
AT1G62590.1	Thale cress	mitochondrion	21.83	25.24
Bra026971.1-P	Field mustard	mitochondrion	21.56	25.12
Bra027029.1-P	Field mustard	mitochondrion	8.32	25.1
AT3G16710.1	Thale cress	mitochondrion	17.33	25.05
PGSC0003DMT400025067	Potato	cytosol	16.23	25.0
KRH09095	Soybean	plastid	19.92	24.96
Solyc06g007300.1.1	Tomato	extracellular	20.05	24.83
Bra026954.1-P	Field mustard	mitochondrion	21.96	24.77
Bra026958.1-P	Field mustard	mitochondrion	21.42	24.65
PGSC0003DMT400053182	Potato	cytosol	20.05	24.54
AT1G12775.1	Thale cress	cytosol, mitochondrion	21.56	24.53
KRH09097	Soybean	plastid	19.51	24.53
AT1G62910.1	Thale cress	mitochondrion	21.01	24.37
AT1G63150.1	Thale cress	mitochondrion	20.87	24.32
PGSC0003DMT400052971	Potato	mitochondrion	19.65	24.28
Bra027026.1-P	Field mustard	mitochondrion	17.33	24.28
Bra028267.1-P	Field mustard	mitochondrion	20.74	24.28
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.23	24.24
PGSC0003DMT400008760	Potato	mitochondrion	19.24	24.06
Bra031731.1-P	Field mustard	mitochondrion	16.64	24.02
AT1G62680.2	Thale cress	plastid	17.87	23.91
Solyc04g080120.1.1	Tomato	extracellular	19.92	23.86
AT1G06580.1	Thale cress	mitochondrion	16.23	23.8
AT5G41170.1	Thale cress	mitochondrion	17.05	23.72
CDX68679	Canola	cytosol	3.68	23.48
PGSC0003DMT400015293	Potato	mitochondrion	19.51	23.44
PGSC0003DMT400015298	Potato	mitochondrion	19.51	23.44
AT1G12700.2	Thale cress	cytosol	19.65	23.3
KRH08599	Soybean	cytosol, plastid	21.15	23.17
PGSC0003DMT400053556	Potato	mitochondrion	14.46	23.09
Bra026957.1-P	Field mustard	mitochondrion	18.96	23.05
Bra026401.1-P	Field mustard	plastid	16.51	22.62
AT4G26800.2	Thale cress	mitochondrion, plastid	15.42	21.98
Bra027726.1-P	Field mustard	mitochondrion	14.05	21.87
KRH09085	Soybean	mitochondrion	19.78	20.6
AT1G64100.2	Thale cress	cytosol	22.65	20.6
VIT_14s0030g02260.t01	Wine grape	cytosol	12.28	20.32
Bra027656.1-P	Field mustard	cytosol	25.38	19.77
KRH12873	Soybean	cytosol	17.6	18.53
KRH39064	Soybean	cytosol	22.37	16.92
Bra016758.1-P	Field mustard	plastid	21.28	13.46

Protein Annotations

EnsemblPlants:TraesCS6D01G290900.1	EnsemblPlantsGene:TraesCS6D01G290900	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:401293744..401295945

Molecular Weight (calculated)

81478.5 Da

IEP (calculated)

8.634

GRAVY (calculated)

-0.004

Length

733 amino acids

Sequence
(BLAST)

001: MSRLRHSTST APMFHLRLLR CRFSSIPISP PSRSWSPVTA FAAATERVSA GTLSPEDAHR LFDELLRQAT PVPARSLNGL LTALSRAPDT GACRDGPALA
101: LALFNRTRRE EAGSWVVPST IFTYGILMNC CCRTRRPELG LAFFGRVLRM GLRTNVVVAT TVLQCLCGAK RTDEAVDILL HRMSELGCVP DDFSYNIVLK
201: SLCDDSRSQR ALDLLRMWEN ERGVCSPNVY TYNTVIHGFF KEGEVSKACN LFHEMAQKGV PPNVVTYSLT IDALCKARAM DKAQLFLRQM IHKGVRPNNV
301: TYNVMIHGYC TLGQWKEAGK MFREMTRQGL IPDIVTWTSF MASLCKHGRT KEAAEFFDSM TAKGHKPDLV MYHVLLHGYA TEGCFADMIN LFNSMATKGI
401: VPDRQVFNIL IDAHAKHGMM DEAMHIFTGM QGQGVCPDVG TYSTLISALC RMGRLADAMD NFSQMIGKGV QPNTVVYHSL IQGFSTHGDL RKAKELVYEM
501: TNKGIPCPNI AFFSSIMDSL CKEGRVMDAH DIFHLVTDIG LKPNIITFNT LIDGHCLVGE MEKAFGVLDS MVSAGIEADV FTYNTLAYGY CRCGRIDDGL
601: ILFREMLQNK PKPTTITYNI ILDGLFRAGR TFAAKKMFLE MIETGITVSI STYSIILGGL CRNNCSDEAI TLFQKLGAMN VKFDIKILTT MINAMFKVWR
701: REEANGLFAA ISASGMVPNA DRKSSKRRIS GRS

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.