Factsheet for TraesCS2D01G533000.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

extracellular 2
mitochondrion 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G532200.1	Wheat	cytosol	39.76	89.42
TraesCS2D01G532400.1	Wheat	cytosol	81.18	87.56
TraesCS2D01G532100.1	Wheat	mitochondrion	89.53	85.26
TraesCS2D01G532500.1	Wheat	plastid	87.56	84.85
TraesCS2D01G532600.1	Wheat	plastid	93.32	79.25
TraesCS2A01G530600.1	Wheat	cytosol	86.49	74.51
TraesCS2D01G532300.1	Wheat	plastid	86.95	73.65
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	39.91	59.91
TraesCS1D01G058400.1	Wheat	cytosol	45.22	57.86
TraesCS1D01G076700.1	Wheat	cytosol	28.22	55.69
TraesCS1D01G057700.1	Wheat	cytosol	27.01	54.77
TraesCS1D01G068700.1	Wheat	cytosol	36.42	54.67
TraesCS1D01G055300.1	Wheat	cytosol	50.68	54.05
TraesCS1D01G056700.1	Wheat	cytosol	49.62	53.87
TraesCS1D01G076500.1	Wheat	mitochondrion	54.17	53.77
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	56.3	53.23
TraesCS1D01G033000.1	Wheat	cytosol	32.17	52.48
TraesCS1D01G058000.1	Wheat	cytosol	32.32	52.46
TraesCS1D01G067600.1	Wheat	cytosol	28.38	51.23
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	51.44	50.37
TraesCS6D01G017800.1	Wheat	cytosol	39.45	48.42
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	57.06	47.78
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	57.06	47.47
TraesCS1D01G056200.1	Wheat	mitochondrion	58.88	47.03
TraesCS6D01G017700.1	Wheat	plastid	37.78	46.63
TraesCS1D01G076400.1	Wheat	cytosol	25.64	46.56
TraesCS1D01G068500.1	Wheat	mitochondrion	57.06	46.31
TraesCS1D01G068800.1	Wheat	plastid	56.9	45.96
TraesCS1D01G068900.1	Wheat	mitochondrion	56.6	45.88
TraesCS1D01G068400.1	Wheat	mitochondrion	56.9	45.56
TraesCS1D01G058500.1	Wheat	plastid	37.48	43.33
TraesCS6D01G083300.1	Wheat	mitochondrion	29.29	43.27
TraesCS6D01G290900.1	Wheat	mitochondrion	47.95	43.11
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	46.13	42.52
TraesCS1D01G069100.1	Wheat	mitochondrion	40.36	41.37
TraesCS6D01G083400.1	Wheat	mitochondrion	29.89	39.96
TraesCS6D01G083100.1	Wheat	cytosol	27.92	37.55
TraesCS1D01G076900.1	Wheat	plastid	37.33	37.44
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	27.31	37.42
TraesCS7D01G231400.1	Wheat	cytosol, plastid	22.46	36.72
TraesCS1D01G068600.1	Wheat	plastid	18.36	35.59
TraesCS6D01G047700.1	Wheat	mitochondrion	36.72	35.02
TraesCS1D01G057800.1	Wheat	mitochondrion	17.75	32.23
TraesCS6D01G076500.1	Wheat	plastid	22.15	32.23
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	16.09	30.99
Solyc06g007280.2.1	Tomato	cytosol	11.99	30.98
PGSC0003DMT400052977	Potato	cytosol	17.45	29.56
VIT_14s0081g00110.t01	Wine grape	cytosol	22.0	29.53
KRH40513	Soybean	plastid	15.02	28.21
VIT_12s0028g02320.t01	Wine grape	mitochondrion	20.18	27.88
KRH39054	Soybean	cytosol	20.64	27.36
KRH39112	Soybean	cytosol	20.64	27.36
Solyc06g005220.2.1	Tomato	cytosol	16.84	27.34
KRH39074	Soybean	cytosol	20.49	27.16
CDX68679	Canola	cytosol	4.7	26.96
Bra036649.1-P	Field mustard	cytosol	15.93	26.85
Bra027636.1-P	Field mustard	cytosol	13.2	26.85
Solyc06g007810.1.1	Tomato	cytosol	10.77	26.49
KRH09082	Soybean	cytosol	16.39	26.47
KRH39004	Soybean	cytosol	19.88	26.36
KRH39057	Soybean	cytosol	19.88	26.36
Bra006187.1-P	Field mustard	plastid	11.53	26.12
KRH39072	Soybean	cytosol	19.58	26.01
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.73	25.74
VIT_14s0081g00120.t01	Wine grape	plastid	22.76	25.73
VIT_14s0081g00270.t01	Wine grape	plastid	22.61	25.69
KRH31646	Soybean	cytosol	20.18	25.68
PGSC0003DMT400025087	Potato	endoplasmic reticulum	19.12	25.45
PGSC0003DMT400008759	Potato	cytosol	12.29	25.39
KRH08636	Soybean	cytosol	20.03	25.29
PGSC0003DMT400025067	Potato	cytosol	18.21	25.21
KRH17148	Soybean	mitochondrion	20.79	25.14
KRH09084	Soybean	plastid	19.27	24.85
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.58	24.57
KRH25652	Soybean	cytosol, golgi	20.03	24.44
KRH08607	Soybean	cytosol	20.79	24.42
AT5G16640.1	Thale cress	mitochondrion	18.66	24.4
Bra026884.1-P	Field mustard	cytosol	17.0	24.4
KRH39066	Soybean	cytosol	20.49	24.32
Bra027029.1-P	Field mustard	mitochondrion	8.95	24.28
KRH08628	Soybean	plastid	20.33	24.28
KRH39050	Soybean	mitochondrion	19.58	24.25
Bra026882.1-P	Field mustard	cytosol	19.58	24.16
KRH48615	Soybean	mitochondrion	19.88	24.04
KRH09121	Soybean	mitochondrion	19.27	23.78
KRH09154	Soybean	mitochondrion	20.03	23.74
PGSC0003DMT400008757	Potato	cytosol	17.75	23.49
KRH08277	Soybean	plastid	20.18	23.46
KRH40400	Soybean	plastid	20.49	23.4
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.61	23.32
KRH08625	Soybean	plastid	20.33	23.26
VIT_14s0030g02280.t01	Wine grape	plastid	19.73	23.17
AT1G63330.2	Thale cress	cytosol	19.58	23.08
AT1G06580.1	Thale cress	mitochondrion	17.45	23.0
KRH08671	Soybean	cytosol, mitochondrion	19.27	22.97
KRH08639	Soybean	mitochondrion, plastid	19.58	22.83
PGSC0003DMT400053185	Potato	mitochondrion	20.33	22.71
KRH41817	Soybean	mitochondrion	19.12	22.7
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.39	22.64
Solyc06g007740.1.1	Tomato	cytosol	20.18	22.54
Solyc06g007300.1.1	Tomato	extracellular	20.18	22.47
AT1G63080.3	Thale cress	mitochondrion	20.79	22.31
Bra031731.1-P	Field mustard	mitochondrion	17.15	22.24
PGSC0003DMT400025074	Potato	cytosol	18.51	22.1
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.21	22.1
Bra026971.1-P	Field mustard	mitochondrion	21.09	22.1
PGSC0003DMT400052971	Potato	mitochondrion	19.88	22.09
AT1G64583.1	Thale cress	mitochondrion	17.15	22.07
AT1G62670.1	Thale cress	mitochondrion	21.09	22.06
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.79	22.06
VIT_14s0030g02260.t01	Wine grape	cytosol	14.72	21.9
AT1G64580.1	Thale cress	mitochondrion	17.3	21.8
AT1G62930.1	Thale cress	plastid	20.64	21.62
KRH09097	Soybean	plastid	19.12	21.61
PGSC0003DMT400056665	Potato	mitochondrion	19.27	21.56
AT1G63070.1	Thale cress	mitochondrion	19.27	21.53
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.18	21.49
PGSC0003DMT400015293	Potato	mitochondrion	19.88	21.48
PGSC0003DMT400015298	Potato	mitochondrion	19.88	21.48
AT5G41170.1	Thale cress	mitochondrion	17.15	21.44
Bra021192.1-P	Field mustard	plastid	16.39	21.43
Solyc04g080120.1.1	Tomato	extracellular	19.88	21.41
KRH09095	Soybean	plastid	18.97	21.37
AT1G12300.1	Thale cress	mitochondrion	20.64	21.35
AT1G62720.1	Thale cress	mitochondrion	15.63	21.24
Bra026958.1-P	Field mustard	mitochondrion	20.49	21.19
AT1G63400.1	Thale cress	cytosol, plastid	18.51	21.14
PGSC0003DMT400053556	Potato	mitochondrion	14.72	21.13
Bra028267.1-P	Field mustard	mitochondrion	20.03	21.09
AT1G62910.1	Thale cress	mitochondrion	20.18	21.04
Bra036651.1-P	Field mustard	mitochondrion	17.0	20.93
AT3G16710.1	Thale cress	mitochondrion	16.09	20.91
AT1G62680.2	Thale cress	plastid	17.3	20.8
PGSC0003DMT400056663	Potato	plastid	18.51	20.75
AT1G63130.1	Thale cress	mitochondrion	19.73	20.63
Bra026954.1-P	Field mustard	mitochondrion	20.33	20.62
PGSC0003DMT400008760	Potato	mitochondrion	18.21	20.48
Bra027026.1-P	Field mustard	mitochondrion	16.24	20.46
AT1G12700.2	Thale cress	cytosol	19.12	20.39
PGSC0003DMT400053182	Potato	cytosol	18.51	20.37
AT1G63150.1	Thale cress	mitochondrion	19.42	20.35
AT1G62590.1	Thale cress	mitochondrion	19.58	20.35
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.88	20.34
Bra016762.1-P	Field mustard	mitochondrion	18.51	20.1
AT1G62914.1	Thale cress	mitochondrion	16.09	20.08
KRH08599	Soybean	cytosol, plastid	20.33	20.03
TraesCS1D01G056600.1	Wheat	mitochondrion	6.07	19.8
Bra026957.1-P	Field mustard	mitochondrion	17.91	19.57
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.26	19.14
Bra026401.1-P	Field mustard	plastid	15.48	19.07
AT4G26800.2	Thale cress	mitochondrion, plastid	14.72	18.87
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	6.53	18.86
AT1G64100.2	Thale cress	cytosol	21.85	17.87
Bra027726.1-P	Field mustard	mitochondrion	12.75	17.83
KRH09085	Soybean	mitochondrion	18.51	17.33
KRH12873	Soybean	cytosol	18.06	17.1
Bra027656.1-P	Field mustard	cytosol	22.61	15.83
KRH39064	Soybean	cytosol	21.09	14.34
Bra016758.1-P	Field mustard	plastid	19.27	10.96

Protein Annotations

EnsemblPlants:TraesCS2D01G533000.1	EnsemblPlantsGene:TraesCS2D01G533000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:617907477..617909456

Molecular Weight (calculated)

72602.5 Da

IEP (calculated)

7.778

GRAVY (calculated)

0.175

Length

659 amino acids

Sequence
(BLAST)

001: MDCCCRAGRP DLVVAFFGRL IRLGLRLDVI AFSNLLKGLC KAKRSNEALD LLLHRMPELD CAPDVFSYSI VINGCFKEGE VDKACNLFHE MIQLGVQPDV
101: AIYTSIIDAL SKCGAMDKAE VVLRQMVDQG IGPDVMTYSS LIHGYSTLGQ WKAAVRVLKE MVSVGVRPDA VTLNSFMDSL CKHRRTKEAR DIFDSMAAKG
201: HKPNIVSYTI MLNGYVKEGC FDDMTGLINS MLQNGIVPDH HVFNILINAY SKRGLMDEAM HMFEVMKQQG VNPDVVDYLV VMDSLCKMGK MAAAMDKFNQ
301: MINQGVSPNK AVYQCLVLGS CSHGDFVKAK ELISEAVNRG LCSNSVFFYP VINDLCKEGK VKEAQDMFDF IVGIGQRPDV IMYNSLMDGY CLVGKVEEAL
401: RVLDAMKSAG LQPDAITYAI LLNGYCKIGR IADGLSLFRE MSLSGVKPTT IMYSIILDGL FRSGRTVSAK EKFNTMVESG LPVDVRTYNI VLHGLCRNNC
501: TGEAIELFKK LCATNLKINV ITFNTMISAM FKTRRIGEAK DLFATISAIG LVPSVVTYSV MTTNFIKEGL LAEADDMFLA MEKAGCAPDS RLLNHVVSVL
601: LENGAVVKAA TYLAKLDAKQ LSLEASTVSL IVSLFSRKGK LREHVKLLPV KYQPPEMLG

Best Arabidopsis Sequence Match ( AT1G63150.1 )
(BLAST)

001: MQRSISLTAK RLFVHWNLQG IGNPPTVPSF FNLCGSGCWE RSFASASGDY REILRNRLSD IIKVDDAVDL FGDMVKSRPF PSIVEFNKLL SAVAKMNKFE
101: LVISLGEQMQ TLGISHDLYT YSIFINCFCR RSQLSLALAV LAKMMKLGYE PDIVTLSSLL NGYCHSKRIS DAVALVDQMV EMGYKPDTFT FTTLIHGLFL
201: HNKASEAVAL VDQMVQRGCQ PDLVTYGTVV NGLCKRGDID LALNLLNKME AARIKANVVI FNTIIDSLCK YRHVEVAVDL FTEMETKGIR PNVVTYNSLI
301: NCLCNYGRWS DASRLLSNML EKKINPNVVT FNALIDAFFK EGKLVEAEKL HEEMIQRSID PDTITYNLLI NGFCMHNRLD EAKQMFKFMV SKDCLPNIQT
401: YNTLINGFCK CKRVEDGVEL FREMSQRGLV GNTVTYTTII QGFFQAGDCD SAQMVFKQMV SNRVPTDIMT YSILLHGLCS YGKLDTALVI FKYLQKSEME
501: LNIFIYNTMI EGMCKAGKVG EAWDLFCSLS IKPDVVTYNT MISGLCSKRL LQEADDLFRK MKEDGTLPNS GTYNTLIRAN LRDCDRAASA ELIKEMRSSG
601: FVGDASTISL VTNMLHDGRL DKSFLNMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g63150 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAM8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.