Factsheet for TraesCS1D01G076800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G056600.1	Wheat	mitochondrion	60.53	68.32
TraesCS1A01G055500.1	Wheat	mitochondrion	63.6	66.82
TraesCS1D01G057800.1	Wheat	mitochondrion	68.86	43.25
TraesCS1D01G068600.1	Wheat	plastid	56.58	37.94
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	54.39	36.26
TraesCS1D01G058500.1	Wheat	plastid	65.79	26.32
TraesCS7D01G231400.1	Wheat	cytosol, plastid	45.18	25.56
TraesCS1D01G069100.1	Wheat	mitochondrion	63.6	22.55
TraesCS1D01G076900.1	Wheat	plastid	64.91	22.53
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	45.18	21.41
TraesCS6D01G083400.1	Wheat	mitochondrion	44.74	20.69
TraesCS6D01G290900.1	Wheat	mitochondrion	62.28	19.37
TraesCS1D01G068900.1	Wheat	mitochondrion	67.98	19.07
TraesCS1D01G056200.1	Wheat	mitochondrion	68.86	19.03
Os04t0349600-01	Rice	plastid	32.02	18.86
TraesCS6D01G083100.1	Wheat	cytosol	40.35	18.78
TraesCS6D01G083300.1	Wheat	mitochondrion	36.4	18.61
TraesCS1D01G068400.1	Wheat	mitochondrion	66.67	18.47
TraesCS1D01G058000.1	Wheat	cytosol	32.46	18.23
TraesCS1D01G068500.1	Wheat	mitochondrion	64.04	17.98
TraesCS6D01G076500.1	Wheat	plastid	34.65	17.44
TraesCS1D01G068800.1	Wheat	plastid	61.84	17.28
KXG28799	Sorghum	plastid	52.63	15.79
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	54.39	15.76
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	53.07	15.28
Zm00001d007531_P001	Maize	plastid	52.63	14.74
Zm00001d007548_P001	Maize	plastid	52.19	14.62
Zm00001d007559_P001	Maize	plastid	52.19	14.57
Zm00001d007555_P001	Maize	plastid	51.32	14.37
TraesCS2D01G532300.1	Wheat	plastid	48.25	14.14
TraesCS2D01G532600.1	Wheat	plastid	47.81	14.05
TraesCS1D01G076500.1	Wheat	mitochondrion	39.91	13.7
Zm00001d007534_P001	Maize	plastid	45.18	13.26
TraesCS6D01G047700.1	Wheat	mitochondrion	32.89	10.85
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	35.53	10.57
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	32.02	10.47
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	31.14	9.93
TraesCS1D01G076400.1	Wheat	cytosol	14.04	8.82
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	25.88	8.77
KRH40513	Soybean	plastid	12.28	7.98
AT1G62914.1	Thale cress	mitochondrion	18.42	7.95
TraesCS2D01G532400.1	Wheat	cytosol	20.18	7.53
AT1G62670.1	Thale cress	mitochondrion	20.61	7.46
AT1G63070.1	Thale cress	mitochondrion	19.3	7.46
TraesCS2D01G532100.1	Wheat	mitochondrion	22.37	7.37
TraesCS2D01G532500.1	Wheat	plastid	21.93	7.35
Bra021192.1-P	Field mustard	plastid	16.23	7.34
AT1G63400.1	Thale cress	cytosol, plastid	18.42	7.28
AT1G63080.3	Thale cress	mitochondrion	19.3	7.17
AT1G63130.1	Thale cress	mitochondrion	19.74	7.14
KRH09084	Soybean	plastid	15.79	7.05
AT5G16640.1	Thale cress	mitochondrion	15.35	6.94
AT3G16710.1	Thale cress	mitochondrion	15.35	6.9
AT1G06580.1	Thale cress	mitochondrion	14.91	6.8
Bra026882.1-P	Field mustard	cytosol	15.79	6.74
Bra027026.1-P	Field mustard	mitochondrion	15.35	6.69
AT1G62930.1	Thale cress	plastid	18.42	6.68
AT3G22470.1	Thale cress	cytosol, mitochondrion	17.98	6.62
AT1G12620.1	Thale cress	cytosol, mitochondrion	17.98	6.6
AT1G62720.1	Thale cress	mitochondrion	14.04	6.6
VIT_14s0030g02280.t01	Wine grape	plastid	16.23	6.6
AT1G12300.1	Thale cress	mitochondrion	18.42	6.59
Bra016762.1-P	Field mustard	mitochondrion	17.54	6.59
Bra027726.1-P	Field mustard	mitochondrion	13.6	6.58
Bra026401.1-P	Field mustard	plastid	15.35	6.54
Bra036651.1-P	Field mustard	mitochondrion	15.35	6.54
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	18.86	6.53
AT1G63150.1	Thale cress	mitochondrion	17.98	6.52
VIT_14s0081g00120.t01	Wine grape	plastid	16.67	6.52
AT1G64580.1	Thale cress	mitochondrion	14.91	6.5
VIT_12s0028g02320.t01	Wine grape	mitochondrion	13.6	6.5
AT1G62910.1	Thale cress	mitochondrion	17.98	6.49
KRH09154	Soybean	mitochondrion	15.79	6.47
AT1G63330.2	Thale cress	cytosol	15.79	6.44
AT4G26800.2	Thale cress	mitochondrion, plastid	14.47	6.42
KRH39050	Soybean	mitochondrion	14.91	6.39
Bra028267.1-P	Field mustard	mitochondrion	17.54	6.39
Bra026971.1-P	Field mustard	mitochondrion	17.54	6.36
KRH08277	Soybean	plastid	15.79	6.35
KRH08671	Soybean	cytosol, mitochondrion	15.35	6.33
AT1G64583.1	Thale cress	mitochondrion	14.04	6.25
KRH17148	Soybean	mitochondrion	14.91	6.24
VIT_14s0081g00270.t01	Wine grape	plastid	15.79	6.21
KRH09097	Soybean	plastid	15.79	6.17
KRH09095	Soybean	plastid	15.79	6.15
AT1G62590.1	Thale cress	mitochondrion	17.11	6.15
Bra026958.1-P	Field mustard	mitochondrion	17.11	6.12
PGSC0003DMT400053556	Potato	mitochondrion	12.28	6.1
KRH08625	Soybean	plastid	15.35	6.08
AT1G12775.1	Thale cress	cytosol, mitochondrion	17.11	6.06
Os04t0351333-00	Rice	cytosol	23.25	6.03
KRH08639	Soybean	mitochondrion, plastid	14.91	6.02
KRH08628	Soybean	plastid	14.47	5.98
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	13.6	5.9
KRH40400	Soybean	plastid	14.91	5.89
AT5G41170.1	Thale cress	mitochondrion	13.6	5.88
AT1G62680.2	Thale cress	plastid	14.04	5.84
KRH31646	Soybean	cytosol	13.16	5.79
KRH39066	Soybean	cytosol	14.04	5.77
Bra026954.1-P	Field mustard	mitochondrion	16.23	5.69
PGSC0003DMT400053185	Potato	mitochondrion	14.47	5.59
KRH48615	Soybean	mitochondrion	13.16	5.5
AT1G12700.2	Thale cress	cytosol	14.91	5.5
KRH08636	Soybean	cytosol	12.28	5.36
VIT_14s0081g00280.t01	Wine grape	mitochondrion	14.91	5.32
Bra026957.1-P	Field mustard	mitochondrion	14.04	5.31
Bra026836.1-P	Field mustard	cytosol, mitochondrion	11.4	5.3
PGSC0003DMT400056663	Potato	plastid	13.6	5.27
KRH09085	Soybean	mitochondrion	16.23	5.26
KRH09121	Soybean	mitochondrion	12.28	5.24
Bra025516.1-P	Field mustard	cytosol, mitochondrion	10.96	5.24
KRH39112	Soybean	cytosol	11.4	5.23
Bra027658.1-P	Field mustard	cytosol, mitochondrion	12.28	5.16
Bra036649.1-P	Field mustard	cytosol	8.77	5.12
PGSC0003DMT400056665	Potato	mitochondrion	13.16	5.09
Solyc06g007740.1.1	Tomato	cytosol	13.16	5.08
Solyc06g007300.1.1	Tomato	extracellular	13.16	5.07
Solyc04g080120.1.1	Tomato	extracellular	13.6	5.07
KRH41817	Soybean	mitochondrion	12.28	5.05
KRH39004	Soybean	cytosol	10.96	5.03
KRH39054	Soybean	cytosol	10.96	5.03
KRH39057	Soybean	cytosol	10.96	5.03
KRH39074	Soybean	cytosol	10.96	5.03
KRH08607	Soybean	cytosol	12.28	4.99
AT1G64100.2	Thale cress	cytosol	17.54	4.96
PGSC0003DMT400008760	Potato	mitochondrion	12.72	4.95
PGSC0003DMT400015293	Potato	mitochondrion	13.16	4.92
PGSC0003DMT400015298	Potato	mitochondrion	13.16	4.92
PGSC0003DMT400052971	Potato	mitochondrion	12.72	4.89
PGSC0003DMT400053182	Potato	cytosol	12.72	4.84
KRH39072	Soybean	cytosol	10.53	4.84
PGSC0003DMT400025074	Potato	cytosol	11.4	4.71
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	10.09	4.55
Bra031731.1-P	Field mustard	mitochondrion	10.09	4.53
Bra027656.1-P	Field mustard	cytosol	16.67	4.04
KRH25652	Soybean	cytosol, golgi	9.21	3.89
PGSC0003DMT400008757	Potato	cytosol	8.33	3.82
Solyc06g007280.2.1	Tomato	cytosol	3.95	3.53
KRH08599	Soybean	cytosol, plastid	10.09	3.44
KRH39064	Soybean	cytosol	14.04	3.3
Bra016758.1-P	Field mustard	plastid	16.23	3.19
VIT_14s0081g00110.t01	Wine grape	cytosol	6.58	3.05
Bra006187.1-P	Field mustard	plastid	3.51	2.75
PGSC0003DMT400025087	Potato	endoplasmic reticulum	5.7	2.63
KRH12873	Soybean	cytosol	7.89	2.59
PGSC0003DMT400025067	Potato	cytosol	4.82	2.31
TraesCS1D01G055300.1	Wheat	cytosol	6.14	2.27
TraesCS6D01G017700.1	Wheat	plastid	4.82	2.06
Bra027636.1-P	Field mustard	cytosol	2.63	1.85
Bra026884.1-P	Field mustard	cytosol	3.51	1.74
KXG35774	Sorghum	cytosol, mitochondrion	1.75	0.85
TraesCS1D01G056700.1	Wheat	cytosol	2.19	0.82
TraesCS6D01G017800.1	Wheat	cytosol	1.75	0.74
Solyc06g005220.2.1	Tomato	cytosol	1.32	0.74
TraesCS1D01G076700.1	Wheat	cytosol	0.88	0.6
PGSC0003DMT400052977	Potato	cytosol	0.88	0.51
KRH09082	Soybean	cytosol	0.88	0.49
Bra027029.1-P	Field mustard	mitochondrion	0.44	0.41
PGSC0003DMT400008759	Potato	cytosol	0.44	0.31
TraesCS1D01G067600.1	Wheat	cytosol	0.44	0.27
TraesCS1D01G033000.1	Wheat	cytosol	0.44	0.25
TraesCS1D01G068700.1	Wheat	cytosol	0.44	0.23
VIT_14s0030g02260.t01	Wine grape	cytosol	0.44	0.23
TraesCS1D01G058400.1	Wheat	cytosol	0.44	0.19
CDX68679	Canola	cytosol	0.0	0.0
Solyc06g007810.1.1	Tomato	cytosol	0.0	0.0
TraesCS1A01G055600.1	Wheat	cytosol	0.0	0.0
TraesCS1D01G057700.1	Wheat	cytosol	0.0	0.0
TraesCS2D01G532200.1	Wheat	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1D01G076800.1	EnsemblPlantsGene:TraesCS1D01G076800	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1D:-:58763506..58764192

Molecular Weight (calculated)

25206.5 Da

IEP (calculated)

9.821

GRAVY (calculated)

-0.123

Length

228 amino acids

Sequence
(BLAST)

001: MPRLCSTTPM ARLRRRRRYS SSTSSPSRRW DPRAAFAAAT ERIRAGTLRP EDAHHLFDEL LLQANPVPER SLSDFLAALA RAPSSAALRD GPSLALGLFN
101: LVCREEAGPQ VAPPTTCTYN ILMDSCCRAR RPDLGLAFFG RFLSTGLKAN QIVATTLLKC LCHARRTDEA INVLLHRMSE FGCVPNVISY SIVLKSLCDD
201: SRSQQALDLL QMVRKGGAAP SVWWHIAQ

Best Arabidopsis Sequence Match ( AT1G63130.1 )
(BLAST)

001: MRRLFAISST GNRFVHRSLL GKGKCGTAPP SFSHCSFWVR DFSGVRYDYR KISINRLNDL KLDDAVNLFG DMVKSRPFPS IVEFSKLLSA IAKMNKFDLV
101: ISLGEQMQNL GISHNLYTYS ILINCFCRRS QLSLALAVLA KMMKLGYEPD IVTLNSLLNG FCHGNRISDA VSLVGQMVEM GYQPDSFTFN TLIHGLFRHN
201: RASEAVALVD RMVVKGCQPD LVTYGIVVNG LCKRGDIDLA LSLLKKMEQG KIEPGVVIYN TIIDALCNYK NVNDALNLFT EMDNKGIRPN VVTYNSLIRC
301: LCNYGRWSDA SRLLSDMIER KINPNVVTFS ALIDAFVKEG KLVEAEKLYD EMIKRSIDPD IFTYSSLING FCMHDRLDEA KHMFELMISK DCFPNVVTYN
401: TLIKGFCKAK RVDEGMELFR EMSQRGLVGN TVTYTTLIHG FFQARECDNA QIVFKQMVSD GVLPDIMTYS ILLDGLCNNG KVETALVVFE YLQRSKMEPD
501: IYTYNIMIEG MCKAGKVEDG WDLFCSLSLK GVKPNVVTYT TMMSGFCRKG LKEEADALFR EMKEEGPLPD SGTYNTLIRA HLRDGDKAAS AELIREMRSC
601: RFVGDASTIG LVTNMLHDGR LDKSFLKMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g63130, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.