Factsheet for TraesCS6D01G083300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G083400.1	Wheat	mitochondrion	87.0	78.7
HORVU6Hr1G017870.2	Barley	mitochondrion	52.91	78.67
TraesCS6B01G127500.1	Wheat	cytosol	84.75	77.14
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	80.27	73.97
TraesCS7D01G231400.1	Wheat	cytosol, plastid	65.7	72.7
TraesCS6D01G083100.1	Wheat	cytosol	77.58	70.61
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	63.9	59.25
TraesCS1D01G058000.1	Wheat	cytosol	49.55	54.43
TraesCS1D01G057800.1	Wheat	mitochondrion	37.0	45.45
TraesCS1D01G068600.1	Wheat	plastid	33.86	44.41
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	33.86	44.15
TraesCS6D01G076500.1	Wheat	plastid	37.89	37.31
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	18.61	36.4
TraesCS1D01G056600.1	Wheat	mitochondrion	16.14	35.64
TraesCS6D01G290900.1	Wheat	mitochondrion	53.14	32.33
KXG28799	Sorghum	plastid	53.14	31.18
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	48.21	30.85
TraesCS1D01G056200.1	Wheat	mitochondrion	55.61	30.06
TraesCS1D01G068900.1	Wheat	mitochondrion	54.71	30.01
TraesCS2D01G532400.1	Wheat	cytosol	41.03	29.95
TraesCS1D01G068800.1	Wheat	plastid	54.71	29.9
TraesCS1D01G069100.1	Wheat	mitochondrion	43.05	29.86
Solyc06g007280.2.1	Tomato	cytosol	17.04	29.8
TraesCS1D01G076500.1	Wheat	mitochondrion	43.95	29.52
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	44.39	29.42
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	43.27	29.29
TraesCS1D01G068500.1	Wheat	mitochondrion	53.14	29.19
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	50.9	28.84
TraesCS1D01G076900.1	Wheat	plastid	42.38	28.77
Zm00001d007531_P001	Maize	plastid	52.47	28.75
Zm00001d007555_P001	Maize	plastid	52.47	28.75
TraesCS1D01G058400.1	Wheat	cytosol	33.18	28.74
Zm00001d007548_P001	Maize	plastid	52.24	28.62
Zm00001d007559_P001	Maize	plastid	52.24	28.52
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	50.22	28.28
TraesCS1D01G068400.1	Wheat	mitochondrion	51.79	28.07
TraesCS1D01G055300.1	Wheat	cytosol	38.79	27.99
TraesCS2D01G532600.1	Wheat	plastid	48.43	27.84
TraesCS2D01G532100.1	Wheat	mitochondrion	43.05	27.75
TraesCS1D01G076400.1	Wheat	cytosol	22.42	27.55
TraesCS2D01G532500.1	Wheat	plastid	41.93	27.5
Zm00001d007534_P001	Maize	plastid	47.76	27.41
TraesCS2D01G532300.1	Wheat	plastid	47.53	27.25
TraesCS6D01G047700.1	Wheat	mitochondrion	41.7	26.92
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	41.93	26.15
TraesCS1D01G056700.1	Wheat	cytosol	35.43	26.03
Bra027029.1-P	Field mustard	mitochondrion	14.13	25.93
KRH39004	Soybean	cytosol	28.7	25.75
KRH39054	Soybean	cytosol	28.7	25.75
KRH39072	Soybean	cytosol	28.48	25.6
KRH40513	Soybean	plastid	19.96	25.36
KRH39074	Soybean	cytosol	28.25	25.35
KRH39057	Soybean	cytosol	27.8	24.95
Bra036649.1-P	Field mustard	cytosol	21.75	24.81
KRH39112	Soybean	cytosol	27.58	24.75
VIT_12s0028g02320.t01	Wine grape	mitochondrion	26.46	24.74
TraesCS6D01G017800.1	Wheat	cytosol	29.37	24.39
KRH17148	Soybean	mitochondrion	28.7	23.49
KRH08636	Soybean	cytosol	27.35	23.37
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	26.46	23.37
AT1G62914.1	Thale cress	mitochondrion	27.13	22.92
Bra027636.1-P	Field mustard	cytosol	16.37	22.53
KRH39066	Soybean	cytosol	28.03	22.52
AT1G63330.2	Thale cress	cytosol	28.03	22.36
AT1G63400.1	Thale cress	cytosol, plastid	28.92	22.36
KRH08639	Soybean	mitochondrion, plastid	28.03	22.12
KRH09084	Soybean	plastid	25.34	22.11
TraesCS1D01G058500.1	Wheat	plastid	28.25	22.11
PGSC0003DMT400025087	Potato	endoplasmic reticulum	24.44	22.02
KRH08607	Soybean	cytosol	27.58	21.93
KRH39050	Soybean	mitochondrion	26.01	21.8
KRH41817	Soybean	mitochondrion	27.13	21.8
KRH08277	Soybean	plastid	27.58	21.69
PGSC0003DMT400025067	Potato	cytosol	23.09	21.64
KRH08628	Soybean	plastid	26.68	21.56
TraesCS6D01G017700.1	Wheat	plastid	25.78	21.54
AT5G16640.1	Thale cress	mitochondrion	24.22	21.43
KRH31646	Soybean	cytosol	24.89	21.43
AT1G12620.1	Thale cress	cytosol, mitochondrion	29.82	21.42
Bra026884.1-P	Field mustard	cytosol	21.97	21.35
KRH09121	Soybean	mitochondrion	25.56	21.35
PGSC0003DMT400052977	Potato	cytosol	18.61	21.34
KRH25652	Soybean	cytosol, golgi	25.78	21.3
VIT_14s0030g02280.t01	Wine grape	plastid	26.68	21.21
Solyc06g005220.2.1	Tomato	cytosol	19.28	21.18
AT3G22470.1	Thale cress	cytosol, mitochondrion	29.37	21.16
KRH48615	Soybean	mitochondrion	25.56	20.92
KRH08625	Soybean	plastid	26.91	20.83
Bra026971.1-P	Field mustard	mitochondrion	29.37	20.83
KRH40400	Soybean	plastid	26.91	20.8
KRH08671	Soybean	cytosol, mitochondrion	25.78	20.8
AT1G63080.3	Thale cress	mitochondrion	28.48	20.68
AT1G62930.1	Thale cress	plastid	29.15	20.67
Bra026882.1-P	Field mustard	cytosol	24.66	20.6
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	24.22	20.57
KRH09154	Soybean	mitochondrion	25.56	20.5
PGSC0003DMT400008757	Potato	cytosol	22.87	20.48
VIT_14s0081g00110.t01	Wine grape	cytosol	22.42	20.37
Bra016762.1-P	Field mustard	mitochondrion	27.58	20.26
AT1G12300.1	Thale cress	mitochondrion	28.92	20.25
Bra026957.1-P	Field mustard	mitochondrion	27.35	20.23
AT1G62720.1	Thale cress	mitochondrion	21.97	20.21
Bra028267.1-P	Field mustard	mitochondrion	28.25	20.13
AT3G16710.1	Thale cress	mitochondrion	22.87	20.12
KXG35774	Sorghum	cytosol, mitochondrion	21.3	20.08
VIT_14s0081g00120.t01	Wine grape	plastid	26.23	20.07
AT1G12700.2	Thale cress	cytosol	27.58	19.9
KRH09097	Soybean	plastid	26.01	19.9
AT1G64580.1	Thale cress	mitochondrion	23.32	19.89
AT1G12775.1	Thale cress	cytosol, mitochondrion	28.7	19.88
AT1G62670.1	Thale cress	mitochondrion	28.03	19.84
Bra021192.1-P	Field mustard	plastid	22.42	19.84
VIT_14s0081g00270.t01	Wine grape	plastid	25.78	19.83
PGSC0003DMT400053556	Potato	mitochondrion	20.4	19.83
Bra036651.1-P	Field mustard	mitochondrion	23.77	19.81
Bra026958.1-P	Field mustard	mitochondrion	28.25	19.78
Bra025516.1-P	Field mustard	cytosol, mitochondrion	21.08	19.71
Bra027026.1-P	Field mustard	mitochondrion	23.09	19.69
AT1G63130.1	Thale cress	mitochondrion	27.8	19.68
Bra006187.1-P	Field mustard	plastid	12.78	19.59
AT1G62910.1	Thale cress	mitochondrion	27.58	19.46
AT4G26800.2	Thale cress	mitochondrion, plastid	22.42	19.46
Solyc06g007300.1.1	Tomato	extracellular	25.78	19.43
KRH09082	Soybean	cytosol	17.71	19.36
PGSC0003DMT400056665	Potato	mitochondrion	25.56	19.35
AT1G64583.1	Thale cress	mitochondrion	22.2	19.34
Solyc06g007740.1.1	Tomato	cytosol	25.56	19.32
AT1G62590.1	Thale cress	mitochondrion	27.35	19.24
PGSC0003DMT400056663	Potato	plastid	25.34	19.22
AT1G63070.1	Thale cress	mitochondrion	25.34	19.15
Bra026954.1-P	Field mustard	mitochondrion	27.8	19.08
AT5G41170.1	Thale cress	mitochondrion	22.42	18.98
PGSC0003DMT400053185	Potato	mitochondrion	24.89	18.81
KRH09095	Soybean	plastid	24.66	18.8
AT1G06580.1	Thale cress	mitochondrion	21.08	18.8
PGSC0003DMT400052971	Potato	mitochondrion	24.89	18.72
Bra026401.1-P	Field mustard	plastid	22.42	18.69
PGSC0003DMT400025074	Potato	cytosol	23.09	18.66
AT1G62680.2	Thale cress	plastid	22.87	18.61
AT1G63150.1	Thale cress	mitochondrion	26.23	18.6
VIT_14s0081g00280.t01	Wine grape	mitochondrion	26.46	18.47
Bra027658.1-P	Field mustard	cytosol, mitochondrion	21.97	18.05
Bra031731.1-P	Field mustard	mitochondrion	20.4	17.91
KRH08599	Soybean	cytosol, plastid	26.46	17.64
PGSC0003DMT400008760	Potato	mitochondrion	22.87	17.41
PGSC0003DMT400008759	Potato	cytosol	12.33	17.24
PGSC0003DMT400015293	Potato	mitochondrion	23.09	16.89
PGSC0003DMT400015298	Potato	mitochondrion	23.09	16.89
PGSC0003DMT400053182	Potato	cytosol	22.65	16.86
Solyc04g080120.1.1	Tomato	extracellular	23.09	16.83
Bra026836.1-P	Field mustard	cytosol, mitochondrion	17.94	16.29
Bra027726.1-P	Field mustard	mitochondrion	15.92	15.07
KRH09085	Soybean	mitochondrion	23.77	15.06
AT1G64100.2	Thale cress	cytosol	26.91	14.89
KRH12873	Soybean	cytosol	22.65	14.51
Solyc06g007810.1.1	Tomato	cytosol	8.52	14.18
TraesCS1D01G068700.1	Wheat	cytosol	13.68	13.9
Bra027656.1-P	Field mustard	cytosol	28.25	13.39
KRH39064	Soybean	cytosol	28.7	13.21
VIT_14s0030g02260.t01	Wine grape	cytosol	12.56	12.64
TraesCS1D01G033000.1	Wheat	cytosol	10.09	11.14
Bra016758.1-P	Field mustard	plastid	27.58	10.61
TraesCS1D01G076700.1	Wheat	cytosol	7.4	9.88
TraesCS1D01G067600.1	Wheat	cytosol	4.48	5.48
TraesCS1D01G057700.1	Wheat	cytosol	1.12	1.54
CDX68679	Canola	cytosol	0.22	0.87
TraesCS2D01G532200.1	Wheat	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS6D01G083300.1	EnsemblPlantsGene:TraesCS6D01G083300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	MapMan:35.1	:

Description

No Description!

Coordinates

chr6D:-:48458894..48460234

Molecular Weight (calculated)

49738.3 Da

IEP (calculated)

7.496

GRAVY (calculated)

0.077

Length

446 amino acids

Sequence
(BLAST)

001: MLRQPVPISA RALNGLFVAL ARAPPSTACT NASALAIDLF NRMAQAGRRQ VTAPTIYTYN ILIDCCHRAC CPDLGPAFFG RRLKTGIPTD IITYSNLFKC
101: LCDMKRTEEA LGVLLHRMPD DLPDVISYSV ILKSLCDNGR CQLALDLLRM IAEKGSDHSP SVVSYSMVID GFFKEGEISK ACDLFHEMMQ QGVVPDVVTY
201: SSVIDALCKA RAMDKAEVVL RSMVHNGVQP DAVTYNCLIQ GYSTLGQLKE VARLLKVMRS QGVMPSVVTY TSLMDYLCKH GRIKEAEEIF YSMAVNGRKP
301: DIVSYSIMLR GYAIEGSLID MIHLCELMAR NGVVPDLYCF NILINACAKH GMMDVALLFF EDMLKQGVKP NEFTYLTVIS AFCKMGRMDD AMEKFREMID
401: MGVPVDTEVY MCMVEGYFKN GDSVKAKDFI TKMKNKDISN RPQKGN

Best Arabidopsis Sequence Match ( AT1G12620.1 )
(BLAST)

001: MRGLIQTRLL ETGTLRTALF LSCYGRVFSS VSDGKGKVSY RERLRSGIVD IKEDDAVDLF QEMTRSRPRP RLIDFSRLFS VVARTKQYDL VLDLCKQMEL
101: KGIAHNLYTL SIMINCCCRC RKLSLAFSAM GKIIKLGYEP DTVTFSTLIN GLCLEGRVSE ALELVDRMVE MGHKPTLITL NALVNGLCLN GKVSDAVLLI
201: DRMVETGFQP NEVTYGPVLK VMCKSGQTAL AMELLRKMEE RKIKLDAVKY SIIIDGLCKD GSLDNAFNLF NEMEIKGFKA DIIIYTTLIR GFCYAGRWDD
301: GAKLLRDMIK RKITPDVVAF SALIDCFVKE GKLREAEELH KEMIQRGISP DTVTYTSLID GFCKENQLDK ANHMLDLMVS KGCGPNIRTF NILINGYCKA
401: NLIDDGLELF RKMSLRGVVA DTVTYNTLIQ GFCELGKLEV AKELFQEMVS RRVRPDIVSY KILLDGLCDN GEPEKALEIF EKIEKSKMEL DIGIYNIIIH
501: GMCNASKVDD AWDLFCSLPL KGVKPDVKTY NIMIGGLCKK GSLSEADLLF RKMEEDGHSP NGCTYNILIR AHLGEGDATK SAKLIEEIKR CGFSVDASTV
601: KMVVDMLSDG RLKKSFLDML S

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12620 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASZ8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.