Factsheet for TraesCS6D01G017700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G017800.1	Wheat	cytosol	76.78	76.35
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	80.52	60.14
HORVU1Hr1G018190.2	Barley	cytosol	29.21	54.74
HORVU6Hr1G002890.6	Barley	cytosol, plastid	74.53	50.06
Os10t0501700-00	Rice	cytosol	38.39	45.15
TraesCS6D01G047700.1	Wheat	mitochondrion	57.68	44.57
TraesCS1D01G058400.1	Wheat	cytosol	40.26	41.75
TraesCS1D01G068700.1	Wheat	cytosol	34.08	41.46
TraesCS1D01G033000.1	Wheat	cytosol	31.09	41.09
Os10t0497366-00	Rice	mitochondrion	30.71	40.9
TraesCS1D01G067600.1	Wheat	cytosol	26.78	39.18
TraesCS1D01G057700.1	Wheat	cytosol	23.6	38.77
TraesCS2D01G532200.1	Wheat	cytosol	20.97	38.23
TraesCS1D01G055300.1	Wheat	cytosol	44.01	38.03
Os10t0497300-01	Rice	mitochondrion	56.37	37.91
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	46.63	37.78
TraesCS1D01G056700.1	Wheat	cytosol	42.88	37.73
TraesCS2D01G532400.1	Wheat	cytosol	43.07	37.64
Os10t0495200-01	Rice	mitochondrion	54.31	37.08
TraesCS1D01G076700.1	Wheat	cytosol	22.85	36.53
TraesCS2D01G532500.1	Wheat	plastid	46.07	36.18
Zm00001d009733_P001	Maize	cytosol	53.75	36.1
KXG34536	Sorghum	mitochondrion	37.83	35.31
TraesCS2D01G532100.1	Wheat	mitochondrion	45.69	35.26
TraesCS1D01G076500.1	Wheat	mitochondrion	43.82	35.24
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	45.69	35.01
TraesCS6D01G076500.1	Wheat	plastid	28.84	34.0
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	41.39	32.84
TraesCS2D01G532600.1	Wheat	plastid	47.38	32.6
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	47.75	32.4
TraesCS2D01G532300.1	Wheat	plastid	47.19	32.39
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	47.94	32.32
Os08t0110200-01	Rice	mitochondrion	47.75	31.95
Os08t0107800-01	Rice	mitochondrion	36.7	31.41
TraesCS1D01G058000.1	Wheat	cytosol	23.6	31.03
TraesCS1D01G068500.1	Wheat	mitochondrion	47.19	31.03
Os10t0495100-01	Rice	cytosol, mitochondrion	26.78	31.02
TraesCS1D01G068800.1	Wheat	plastid	47.38	31.0
EER95949	Sorghum	mitochondrion	38.2	30.77
TraesCS1D01G068900.1	Wheat	mitochondrion	46.82	30.75
OQU88594	Sorghum	cytosol	29.59	30.27
TraesCS1D01G056200.1	Wheat	mitochondrion	45.69	29.58
Zm00001d018982_P001	Maize	mitochondrion	19.29	29.43
Zm00001d009735_P001	Maize	cytosol	53.0	29.09
TraesCS1D01G069100.1	Wheat	mitochondrion	35.02	29.08
TraesCS1D01G068400.1	Wheat	mitochondrion	44.01	28.55
Os10t0499500-01	Rice	mitochondrion	26.78	28.26
PGSC0003DMT400052977	Potato	cytosol	20.41	28.02
Bra027636.1-P	Field mustard	cytosol	16.85	27.78
Bra027029.1-P	Field mustard	mitochondrion	12.55	27.57
Solyc06g005220.2.1	Tomato	cytosol	20.41	26.85
TraesCS6D01G290900.1	Wheat	mitochondrion	36.7	26.74
TraesCS1D01G076400.1	Wheat	cytosol	18.16	26.72
Os08t0248400-01	Rice	mitochondrion	21.72	26.36
TraesCS1D01G076900.1	Wheat	plastid	32.02	26.03
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	23.41	25.99
TraesCS1D01G058500.1	Wheat	plastid	27.53	25.79
TraesCS6D01G083300.1	Wheat	mitochondrion	21.54	25.78
CDX68679	Canola	cytosol	5.43	25.22
Solyc06g007280.2.1	Tomato	cytosol	11.98	25.1
Solyc06g007810.1.1	Tomato	cytosol	12.55	25.0
TraesCS6D01G083100.1	Wheat	cytosol	22.66	24.69
PGSC0003DMT400008759	Potato	cytosol	14.61	24.45
Bra006187.1-P	Field mustard	plastid	13.11	24.05
TraesCS6D01G083400.1	Wheat	mitochondrion	21.91	23.73
VIT_14s0081g00110.t01	Wine grape	cytosol	21.72	23.63
Bra036649.1-P	Field mustard	cytosol	17.23	23.53
KRH09082	Soybean	cytosol	17.79	23.28
KRH39054	Soybean	cytosol	21.35	22.94
KRH39004	Soybean	cytosol	21.16	22.74
TraesCS7D01G231400.1	Wheat	cytosol, plastid	17.04	22.58
KRH40513	Soybean	plastid	14.79	22.51
KRH39057	Soybean	cytosol	20.79	22.33
KRH39074	Soybean	cytosol	20.6	22.13
Bra026884.1-P	Field mustard	cytosol	18.91	22.0
KRH31646	Soybean	cytosol	21.16	21.81
KRH39050	Soybean	mitochondrion	21.72	21.8
VIT_14s0081g00120.t01	Wine grape	plastid	23.78	21.78
KRH08636	Soybean	cytosol	21.16	21.65
KRH39072	Soybean	cytosol	20.04	21.57
OQU88581	Sorghum	cytosol	43.63	21.44
PGSC0003DMT400025067	Potato	cytosol	19.1	21.43
Os08t0107700-01	Rice	cytosol, mitochondrion	14.98	21.39
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.22	21.39
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.1	21.38
Solyc06g007740.1.1	Tomato	cytosol	23.6	21.36
KRH39112	Soybean	cytosol	19.85	21.33
Bra025516.1-P	Field mustard	cytosol, mitochondrion	18.91	21.17
PGSC0003DMT400025087	Potato	endoplasmic reticulum	19.29	20.81
VIT_14s0030g02260.t01	Wine grape	cytosol	17.23	20.77
KRH41817	Soybean	mitochondrion	21.54	20.72
KRH08671	Soybean	cytosol, mitochondrion	21.35	20.61
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	20.22	20.57
VIT_14s0081g00270.t01	Wine grape	plastid	22.28	20.52
AT3G16710.1	Thale cress	mitochondrion	19.48	20.51
KRH08607	Soybean	cytosol	21.54	20.5
PGSC0003DMT400025074	Potato	cytosol	21.16	20.47
Bra021192.1-P	Field mustard	plastid	19.1	20.24
KRH17148	Soybean	mitochondrion	20.6	20.18
KRH08277	Soybean	plastid	21.35	20.11
AT1G63330.2	Thale cress	cytosol	20.97	20.04
KRH39066	Soybean	cytosol	20.6	19.82
KRH25652	Soybean	cytosol, golgi	20.04	19.81
AT1G62720.1	Thale cress	mitochondrion	17.98	19.79
KRH40400	Soybean	plastid	21.35	19.76
PGSC0003DMT400008757	Potato	cytosol	18.35	19.68
KRH08639	Soybean	mitochondrion, plastid	20.79	19.65
AT5G16640.1	Thale cress	mitochondrion	18.54	19.64
KRH48615	Soybean	mitochondrion	20.04	19.63
Bra036651.1-P	Field mustard	mitochondrion	19.66	19.63
KRH08628	Soybean	plastid	20.22	19.57
Bra027026.1-P	Field mustard	mitochondrion	18.91	19.31
Bra026882.1-P	Field mustard	cytosol	19.29	19.29
KRH09084	Soybean	plastid	18.35	19.18
PGSC0003DMT400052971	Potato	mitochondrion	21.16	19.06
AT1G62680.2	Thale cress	plastid	19.48	18.98
AT1G64580.1	Thale cress	mitochondrion	18.54	18.93
KRH08625	Soybean	plastid	20.41	18.92
PGSC0003DMT400056665	Potato	mitochondrion	20.79	18.85
PGSC0003DMT400053185	Potato	mitochondrion	20.79	18.81
Solyc06g007300.1.1	Tomato	extracellular	20.79	18.75
KRH09154	Soybean	mitochondrion	19.48	18.7
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.28	18.62
PGSC0003DMT400053182	Potato	cytosol	20.79	18.53
AT1G62930.1	Thale cress	plastid	21.72	18.44
PGSC0003DMT400056663	Potato	plastid	20.22	18.37
KRH09121	Soybean	mitochondrion	18.35	18.35
AT1G63130.1	Thale cress	mitochondrion	21.54	18.25
AT5G41170.1	Thale cress	mitochondrion	17.79	18.03
VIT_14s0030g02280.t01	Wine grape	plastid	18.91	18.0
AT1G64583.1	Thale cress	mitochondrion	17.23	17.97
TraesCS1D01G068600.1	Wheat	plastid	11.42	17.94
AT1G06580.1	Thale cress	mitochondrion	16.67	17.8
PGSC0003DMT400008760	Potato	mitochondrion	19.48	17.75
Bra026958.1-P	Field mustard	mitochondrion	21.16	17.74
AT1G62910.1	Thale cress	mitochondrion	20.97	17.72
Bra031731.1-P	Field mustard	mitochondrion	16.85	17.72
Bra027658.1-P	Field mustard	cytosol, mitochondrion	17.98	17.68
Bra016762.1-P	Field mustard	mitochondrion	20.04	17.63
AT1G62590.1	Thale cress	mitochondrion	20.79	17.51
AT1G63150.1	Thale cress	mitochondrion	20.6	17.49
AT1G63070.1	Thale cress	mitochondrion	19.29	17.46
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.22	17.45
AT1G63080.3	Thale cress	mitochondrion	20.04	17.43
AT1G63400.1	Thale cress	cytosol, plastid	18.73	17.33
AT4G26800.2	Thale cress	mitochondrion, plastid	16.67	17.32
AT1G62670.1	Thale cress	mitochondrion	20.41	17.3
Bra026954.1-P	Field mustard	mitochondrion	20.97	17.23
PGSC0003DMT400015293	Potato	mitochondrion	19.48	17.05
PGSC0003DMT400015298	Potato	mitochondrion	19.48	17.05
Bra026971.1-P	Field mustard	mitochondrion	20.04	17.01
Solyc04g080120.1.1	Tomato	extracellular	19.48	16.99
AT1G12300.1	Thale cress	mitochondrion	20.22	16.95
Bra028267.1-P	Field mustard	mitochondrion	19.85	16.93
AT1G12700.2	Thale cress	cytosol	19.48	16.83
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.29	16.59
Bra026957.1-P	Field mustard	mitochondrion	18.73	16.58
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.17	16.5
PGSC0003DMT400053556	Potato	mitochondrion	14.04	16.34
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.66	16.3
KRH08599	Soybean	cytosol, plastid	20.41	16.29
Bra027726.1-P	Field mustard	mitochondrion	14.23	16.14
Bra026401.1-P	Field mustard	plastid	16.1	16.07
KRH09097	Soybean	plastid	17.42	15.95
KRH09095	Soybean	plastid	17.04	15.56
AT1G62914.1	Thale cress	mitochondrion	15.36	15.53
KRH12873	Soybean	cytosol	20.22	15.52
TraesCS1D01G057800.1	Wheat	mitochondrion	10.11	14.88
AT1G64100.2	Thale cress	cytosol	21.16	14.02
KRH09085	Soybean	mitochondrion	17.42	13.21
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	8.43	13.16
Bra027656.1-P	Field mustard	cytosol	22.1	12.54
KRH39064	Soybean	cytosol	21.72	11.97
Os10t0497432-01	Rice	mitochondrion	4.68	9.4
Bra016758.1-P	Field mustard	plastid	19.85	9.15
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	2.06	4.82
TraesCS1D01G056600.1	Wheat	mitochondrion	1.5	3.96

Protein Annotations

EnsemblPlants:TraesCS6D01G017700.1	EnsemblPlantsGene:TraesCS6D01G017700	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr6D:-:7343818..7345738

Molecular Weight (calculated)

60040.4 Da

IEP (calculated)

6.064

GRAVY (calculated)

-0.002

Length

534 amino acids

Sequence
(BLAST)

001: MWHPTVSRTP SSSTAAAVLA AWTSVSPPWA TLLRWDLQQI LPNAVTYNSI ISRMCKVHAM DKAEEVLQQM LDRRILPDAA TYNSLIHGYY LLGQCEEVDR
101: VLKEMCRKSV QPNIVTYYIQ MDYLCKSGRC AEARKIFDSM IGLGQKPDVT TYSILLHGYA MEKSFHEMHC LIDLMVENGI APDHHVYNIL ISAYAKEERV
201: GEVVHIFTKM RQQGLNPNVA NYGVVVNLLC SMGRMDDAMS QYNQMITEGL LPGIILFSQL ISGFCTCGKW EKVHELFSEM LDRGIYPDTV FFNTIMDHLC
301: KNGRVMEAQD LFDLMVHMGV KPDVCTYSTL IGGYLFVGKM DEVSKLLDNM VSIGMDPDVI TYSILIDGYC KNGRIDDALV VFREMLAGKV KPCIITFNIM
401: IGALLKGGRK EEAKDLFDGI WAKGLVPTVV TYSLMIQKLI EEGSLQESDD LFLSMEKNGC PANSRMLNAI VRRLLQKGEM PRAGTYLSKI DERNFTLEAS
501: TTSLLTALAS VGKCQEYKGL LPEKYHSFLE QGTD

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.