Factsheet for TraesCS5B01G250800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	42.8	94.15
TraesCS6B01G021600.1	Wheat	mitochondrion	84.9	84.78
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	44.76	84.43
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	84.34	84.34
TraesCS6A01G015000.1	Wheat	mitochondrion	48.81	84.1
HORVU1Hr1G018190.2	Barley	cytosol	30.63	76.84
HORVU6Hr1G002890.6	Barley	cytosol, plastid	78.46	70.57
TraesCS6B01G114300.1	Wheat	cytosol	32.73	60.15
Os10t0497366-00	Rice	mitochondrion	30.49	54.36
Os10t0495100-01	Rice	cytosol, mitochondrion	33.71	52.28
OQU88594	Sorghum	cytosol	37.76	51.72
Os10t0497432-01	Rice	mitochondrion	19.16	51.5
Os08t0248400-01	Rice	mitochondrion	31.33	50.91
Os10t0497300-01	Rice	mitochondrion	55.94	50.38
Os10t0495200-01	Rice	mitochondrion	53.71	49.1
Os10t0499500-01	Rice	mitochondrion	34.55	48.81
Zm00001d009733_P001	Maize	cytosol	53.99	48.55
TraesCS2B01G126900.1	Wheat	cytosol	25.87	48.43
Os10t0501700-00	Rice	cytosol	30.49	48.02
EER95949	Sorghum	mitochondrion	44.2	47.66
Os08t0107700-01	Rice	cytosol, mitochondrion	24.9	47.59
Zm00001d018982_P001	Maize	mitochondrion	23.08	47.14
Os08t0107800-01	Rice	mitochondrion	40.28	46.15
Os08t0110200-01	Rice	mitochondrion	50.35	45.11
KXG34536	Sorghum	mitochondrion	35.94	44.93
TraesCS1B01G038400.1	Wheat	cytosol	38.04	44.74
TraesCS1B01G072700.1	Wheat	cytosol	30.91	43.33
TraesCS1B01G085400.1	Wheat	cytosol	38.32	42.75
TraesCS1B01G072400.1	Wheat	cytosol	41.12	42.3
TraesCS1B01G038600.1	Wheat	cytosol	21.12	41.6
TraesCS1B01G092600.1	Wheat	plastid	30.07	41.59
TraesCS2B01G559900.1	Wheat	cytosol	31.47	41.51
TraesCS2B01G560300.1	Wheat	cytosol	33.01	41.48
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	25.45	41.46
TraesCS6B01G127200.1	Wheat	cytosol	19.86	41.28
TraesCS1B01G039700.1	Wheat	cytosol	34.97	41.12
TraesCS1B01G073100.1	Wheat	cytosol	34.83	41.09
TraesCS1B01G038200.1	Wheat	mitochondrion	36.36	41.07
TraesCS1B01G075300.1	Wheat	cytosol	34.27	41.04
TraesCS1B01G038500.1	Wheat	mitochondrion	45.17	40.89
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	28.81	40.79
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	37.76	40.66
TraesCS1B01G039100.1	Wheat	mitochondrion	44.48	40.61
TraesCS2B01G560700.1	Wheat	plastid	43.78	40.6
TraesCS1B01G073200.1	Wheat	cytosol	17.2	40.59
TraesCS1B01G085900.1	Wheat	mitochondrion	46.15	40.54
TraesCS1B01G084800.1	Wheat	cytosol	26.15	40.3
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	24.34	40.18
TraesCS1B01G039200.1	Wheat	mitochondrion	43.92	40.05
TraesCS7B01G469500.1	Wheat	cytosol	31.19	39.68
TraesCS1B01G085300.1	Wheat	mitochondrion	43.92	39.65
TraesCS1B01G092500.1	Wheat	mitochondrion	43.22	39.46
Zm00001d009735_P001	Maize	cytosol	53.57	39.36
TraesCS6B01G341800.2	Wheat	cytosol	21.82	39.1
TraesCS6B01G127500.1	Wheat	cytosol	26.71	38.98
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	41.96	38.46
TraesCS1B01G086000.1	Wheat	plastid	36.08	37.61
TraesCS1B01G072900.2	Wheat	mitochondrion	45.45	37.23
TraesCS1B01G315500.1	Wheat	mitochondrion	16.5	36.76
TraesCS1B01G038300.1	Wheat	plastid	27.97	36.63
TraesCS1B01G072300.1	Wheat	plastid	29.09	36.62
TraesCS1B01G071600.1	Wheat	mitochondrion	42.94	36.2
Solyc06g007280.2.1	Tomato	cytosol	12.59	35.29
KRH40513	Soybean	plastid	15.24	31.05
Solyc06g005220.2.1	Tomato	cytosol	17.34	30.54
Bra036649.1-P	Field mustard	cytosol	16.22	29.67
KRH39050	Soybean	mitochondrion	21.96	29.51
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.58	29.35
PGSC0003DMT400052977	Potato	cytosol	15.94	29.31
Bra027636.1-P	Field mustard	cytosol	13.15	29.01
TraesCS6B01G129100.1	Wheat	cytosol, plastid	11.47	28.47
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	20.7	28.19
AT1G63330.2	Thale cress	cytosol	21.96	28.09
KRH31646	Soybean	cytosol	20.28	27.99
Solyc06g007810.1.1	Tomato	cytosol	10.49	27.99
Bra027029.1-P	Field mustard	mitochondrion	9.37	27.57
VIT_14s0081g00110.t01	Wine grape	cytosol	18.88	27.49
Bra026884.1-P	Field mustard	cytosol	17.62	27.45
KRH39004	Soybean	cytosol	19.02	27.36
KRH39054	Soybean	cytosol	19.02	27.36
KRH39057	Soybean	cytosol	19.02	27.36
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.3	27.33
KRH08636	Soybean	cytosol	19.86	27.2
AT1G62930.1	Thale cress	plastid	23.92	27.19
KRH39074	Soybean	cytosol	18.88	27.16
AT1G62910.1	Thale cress	mitochondrion	23.92	27.06
Solyc06g007740.1.1	Tomato	cytosol	22.24	26.95
VIT_14s0081g00270.t01	Wine grape	plastid	21.82	26.9
KRH41817	Soybean	mitochondrion	20.84	26.85
Bra026882.1-P	Field mustard	cytosol	20.0	26.78
VIT_14s0081g00120.t01	Wine grape	plastid	21.82	26.76
PGSC0003DMT400025087	Potato	endoplasmic reticulum	18.46	26.67
AT3G22470.1	Thale cress	cytosol, mitochondrion	23.08	26.66
KRH09084	Soybean	plastid	19.02	26.61
KRH39112	Soybean	cytosol	18.46	26.56
Solyc06g007300.1.1	Tomato	extracellular	21.96	26.52
AT1G63400.1	Thale cress	cytosol, plastid	21.4	26.52
AT1G62914.1	Thale cress	mitochondrion	19.58	26.52
AT1G62670.1	Thale cress	mitochondrion	23.36	26.51
AT1G63130.1	Thale cress	mitochondrion	23.36	26.51
PGSC0003DMT400008757	Potato	cytosol	18.46	26.51
PGSC0003DMT400025074	Potato	cytosol	20.42	26.45
KRH39072	Soybean	cytosol	18.32	26.41
AT1G64580.1	Thale cress	mitochondrion	19.3	26.39
Bra016762.1-P	Field mustard	mitochondrion	22.38	26.36
AT1G63070.1	Thale cress	mitochondrion	21.68	26.27
PGSC0003DMT400025067	Potato	cytosol	17.48	26.26
AT1G63080.3	Thale cress	mitochondrion	22.52	26.22
CDX68679	Canola	cytosol	4.2	26.09
KRH08671	Soybean	cytosol, mitochondrion	20.14	26.04
PGSC0003DMT400008759	Potato	cytosol	11.61	26.02
KRH08639	Soybean	mitochondrion, plastid	20.56	26.02
Bra025516.1-P	Field mustard	cytosol, mitochondrion	17.34	26.0
AT5G16640.1	Thale cress	mitochondrion	18.32	25.99
Bra036651.1-P	Field mustard	mitochondrion	19.44	25.98
AT1G62720.1	Thale cress	mitochondrion	17.62	25.98
AT1G63150.1	Thale cress	mitochondrion	22.8	25.91
KRH48615	Soybean	mitochondrion	19.72	25.87
KRH08607	Soybean	cytosol	20.28	25.85
AT3G16710.1	Thale cress	mitochondrion	18.32	25.84
KRH08628	Soybean	plastid	19.86	25.72
AT1G06580.1	Thale cress	mitochondrion	17.9	25.6
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.44	25.6
PGSC0003DMT400053185	Potato	mitochondrion	21.12	25.59
AT1G62590.1	Thale cress	mitochondrion	22.66	25.55
PGSC0003DMT400056665	Potato	mitochondrion	20.98	25.47
AT1G12620.1	Thale cress	cytosol, mitochondrion	22.1	25.44
Bra026971.1-P	Field mustard	mitochondrion	22.38	25.44
Bra026958.1-P	Field mustard	mitochondrion	22.66	25.43
KRH39066	Soybean	cytosol	19.72	25.41
Bra021192.1-P	Field mustard	plastid	17.9	25.4
KRH17148	Soybean	mitochondrion	19.3	25.32
KRH09082	Soybean	cytosol	14.41	25.25
Bra006187.1-P	Field mustard	plastid	10.21	25.09
Bra028267.1-P	Field mustard	mitochondrion	21.96	25.08
Bra026954.1-P	Field mustard	mitochondrion	22.8	25.08
Bra031731.1-P	Field mustard	mitochondrion	17.76	25.0
KRH08625	Soybean	plastid	20.14	25.0
PGSC0003DMT400015293	Potato	mitochondrion	21.26	24.92
PGSC0003DMT400015298	Potato	mitochondrion	21.26	24.92
KRH09121	Soybean	mitochondrion	18.6	24.91
Solyc04g080120.1.1	Tomato	extracellular	21.26	24.84
PGSC0003DMT400056663	Potato	plastid	20.42	24.83
AT1G12300.1	Thale cress	mitochondrion	22.1	24.8
KRH08277	Soybean	plastid	19.58	24.69
Bra027026.1-P	Field mustard	mitochondrion	18.04	24.67
KRH40400	Soybean	plastid	19.86	24.61
AT1G64583.1	Thale cress	mitochondrion	17.62	24.61
KRH25652	Soybean	cytosol, golgi	18.46	24.44
VIT_14s0030g02280.t01	Wine grape	plastid	19.16	24.42
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.82	24.41
PGSC0003DMT400008760	Potato	mitochondrion	20.0	24.4
PGSC0003DMT400053556	Potato	mitochondrion	15.66	24.4
KRH09154	Soybean	mitochondrion	18.88	24.28
AT1G62680.2	Thale cress	plastid	18.6	24.27
PGSC0003DMT400052971	Potato	mitochondrion	20.0	24.11
AT5G41170.1	Thale cress	mitochondrion	17.76	24.1
PGSC0003DMT400053182	Potato	cytosol	20.14	24.04
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.36	23.83
Bra027726.1-P	Field mustard	mitochondrion	15.66	23.78
OQU88581	Sorghum	cytosol	35.94	23.64
AT1G12700.2	Thale cress	cytosol	20.0	23.14
AT4G26800.2	Thale cress	mitochondrion, plastid	16.5	22.96
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.56	22.83
KRH09095	Soybean	plastid	18.32	22.39
Bra026401.1-P	Field mustard	plastid	16.36	21.87
KRH09097	Soybean	plastid	17.76	21.78
Bra026957.1-P	Field mustard	mitochondrion	18.18	21.56
KRH08599	Soybean	cytosol, plastid	19.86	21.23
AT1G64100.2	Thale cress	cytosol	23.64	20.97
VIT_14s0030g02260.t01	Wine grape	cytosol	12.45	20.09
KRH09085	Soybean	mitochondrion	18.18	18.47
Bra027656.1-P	Field mustard	cytosol	23.5	17.85
KRH12873	Soybean	cytosol	16.22	16.67
KRH39064	Soybean	cytosol	20.42	15.07
Bra016758.1-P	Field mustard	plastid	21.54	13.29

Protein Annotations

EnsemblPlants:TraesCS5B01G250800.1	EnsemblPlantsGene:TraesCS5B01G250800	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF3
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:432982686..432984833

Molecular Weight (calculated)

80250.9 Da

IEP (calculated)

5.063

GRAVY (calculated)

0.040

Length

715 amino acids

Sequence
(BLAST)

001: MSRRFVPVDR RILERNIKDR YHAGCIGTED ALHLFDELLQ VAGPSSIPAI NCLLTVVGRD CPALGVSLFN HVARAKVPPH NITYGILVDC CCRAGRLDLG
101: HAAMGHVIKL GFTAEAIINF SHLLKAICAE KKTSYAMDIV LRIMPEFNCI PNIFSYNILF KGLCNEKRSQ EALELIQIMV EDGGCCRPDV VTYSTVIDGL
201: LKEDEVDQAY SLFSEMLRQG VSPNVVTCNS IISGMCKLHA MDKAEEVLQQ MLDRRILPDV TTYTSLIHGY YSLGQCEEVD RVFIEMSRNG VQPNIITYSI
301: QMDYLCKNGR CTEARKNFDF MISLGQKPTV TTYNIMLHGY AMERSFHDMN CLIDLMDDNG ISPDHYGYNI LIFAYAEEKM VDEVMHIFTK MRQQGLNPDA
401: VSYGTVIDLL SRIDRMDDAM SQFNQMITEG LVPDIVVFNP LIRGFCSCGK WEKVDELFSE MLDRGICPNI VFFTTIMDRL CKNGRVMEAQ DLFDLMVHMG
501: VKPDVCTYNI LIGGYLFIGK MDEVSKLLDN MVSIGMEPDV ITYNILIDGY SKNGRIDDAF VVFREMLAGK VKPCIITFNI MLGALLKGGR KEEAKDLFDG
601: IWAKGLVPTV VTYSLMIQKL IEEGSLQESD DLFVSMEKNG CAADSHIINA IVRSLFRKGE VPRAGTYLSK IDERSFTLEA STAILLTALA SGGKGQEYKE
701: LLPEKYHSFL EQGTD

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.