Factsheet for TraesCS1B01G039200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G038400.1	Wheat	cytosol	68.24	87.99
TraesCS1B01G038200.1	Wheat	mitochondrion	69.9	86.57
TraesCS1B01G038300.1	Wheat	plastid	59.95	86.08
TraesCS1B01G038500.1	Wheat	mitochondrion	86.48	85.82
TraesCS1B01G039100.1	Wheat	mitochondrion	85.46	85.57
TraesCS1B01G315500.1	Wheat	mitochondrion	34.44	84.11
TraesCS1B01G038600.1	Wheat	cytosol	38.65	83.47
TraesCS1B01G039700.1	Wheat	cytosol	64.67	83.39
TraesCS2B01G126900.1	Wheat	cytosol	39.54	81.15
HORVU1Hr1G004750.6	Barley	plastid	79.97	78.57
TraesCS1A01G031700.1	Wheat	plastid	73.72	78.0
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	69.52	77.97
TraesCS1B01G075300.1	Wheat	cytosol	46.56	61.14
TraesCS6B01G341800.2	Wheat	cytosol	30.74	60.4
TraesCS1B01G092500.1	Wheat	mitochondrion	59.95	60.03
TraesCS1B01G085400.1	Wheat	cytosol	48.47	59.28
TraesCS1B01G073100.1	Wheat	cytosol	45.66	59.08
TraesCS1B01G084800.1	Wheat	cytosol	34.95	59.05
TraesCS1B01G085900.1	Wheat	mitochondrion	60.46	58.23
TraesCS1B01G072400.1	Wheat	cytosol	51.4	57.99
KXG28799	Sorghum	plastid	55.48	57.24
Zm00001d007534_P001	Maize	plastid	56.25	56.76
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	56.38	56.67
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	31.63	56.49
TraesCS1B01G085300.1	Wheat	mitochondrion	56.76	56.19
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	47.19	55.72
TraesCS2B01G560700.1	Wheat	plastid	54.08	54.99
TraesCS1B01G072900.2	Wheat	mitochondrion	60.46	54.3
TraesCS2B01G559900.1	Wheat	cytosol	37.5	54.24
TraesCS1B01G071600.1	Wheat	mitochondrion	58.42	54.01
TraesCS1B01G086000.1	Wheat	plastid	47.19	53.94
Zm00001d007531_P001	Maize	plastid	55.99	53.93
Zm00001d007548_P001	Maize	plastid	55.87	53.81
TraesCS1B01G072300.1	Wheat	plastid	38.9	53.7
Zm00001d007555_P001	Maize	plastid	55.74	53.69
Zm00001d007559_P001	Maize	plastid	55.87	53.61
TraesCS2B01G560300.1	Wheat	cytosol	38.78	53.43
TraesCS7B01G469500.1	Wheat	cytosol	38.14	53.2
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	51.66	52.87
KXG35774	Sorghum	cytosol, mitochondrion	31.89	52.85
TraesCS1B01G092600.1	Wheat	plastid	34.82	52.8
TraesCS1B01G073200.1	Wheat	cytosol	19.64	50.83
TraesCS6B01G127500.1	Wheat	cytosol	31.12	49.8
TraesCS1B01G072700.1	Wheat	cytosol	32.27	49.61
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	31.76	49.31
TraesCS6B01G127200.1	Wheat	cytosol	21.56	49.13
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	26.15	47.34
Os04t0349600-01	Rice	plastid	22.7	45.99
TraesCS6B01G021600.1	Wheat	mitochondrion	40.94	44.83
Os04t0351333-00	Rice	cytosol	49.74	44.37
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	40.18	44.06
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	40.05	43.92
TraesCS6B01G114300.1	Wheat	cytosol	19.9	40.1
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	16.58	40.0
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	18.49	38.26
TraesCS6B01G129100.1	Wheat	cytosol, plastid	12.63	34.38
KRH39004	Soybean	cytosol	19.9	31.39
KRH39054	Soybean	cytosol	19.77	31.19
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.88	31.03
KRH39112	Soybean	cytosol	19.64	30.99
Solyc06g007280.2.1	Tomato	cytosol	10.08	30.98
KRH39057	Soybean	cytosol	19.52	30.78
KRH39074	Soybean	cytosol	19.52	30.78
KRH39072	Soybean	cytosol	19.39	30.65
VIT_14s0081g00110.t01	Wine grape	cytosol	19.01	30.35
KRH09084	Soybean	plastid	19.39	29.75
KRH40513	Soybean	plastid	13.27	29.63
AT5G16640.1	Thale cress	mitochondrion	18.75	29.17
PGSC0003DMT400052977	Potato	cytosol	14.29	28.79
KRH39066	Soybean	cytosol	20.28	28.65
Bra027636.1-P	Field mustard	cytosol	11.73	28.4
KRH48615	Soybean	mitochondrion	19.64	28.26
Bra006187.1-P	Field mustard	plastid	10.46	28.18
Bra036649.1-P	Field mustard	cytosol	14.03	28.13
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	18.75	28.0
VIT_14s0081g00120.t01	Wine grape	plastid	20.79	27.96
KRH17148	Soybean	mitochondrion	19.39	27.89
Solyc06g005220.2.1	Tomato	cytosol	14.41	27.83
KRH09154	Soybean	mitochondrion	19.52	27.52
VIT_14s0081g00270.t01	Wine grape	plastid	20.15	27.24
KRH08636	Soybean	cytosol	18.11	27.2
KRH08277	Soybean	plastid	19.52	26.98
CDX68679	Canola	cytosol	3.95	26.96
KRH08639	Soybean	mitochondrion, plastid	19.39	26.9
KRH41817	Soybean	mitochondrion	19.01	26.85
Bra021192.1-P	Field mustard	plastid	17.22	26.79
KRH09121	Soybean	mitochondrion	18.24	26.78
KRH08671	Soybean	cytosol, mitochondrion	18.88	26.76
KRH08625	Soybean	plastid	19.64	26.74
KRH39050	Soybean	mitochondrion	18.11	26.69
KRH31646	Soybean	cytosol	17.6	26.64
KRH08628	Soybean	plastid	18.75	26.63
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	17.09	26.53
KRH40400	Soybean	plastid	19.39	26.34
KRH25652	Soybean	cytosol, golgi	18.11	26.3
AT1G63330.2	Thale cress	cytosol	18.62	26.12
PGSC0003DMT400008759	Potato	cytosol	10.59	26.02
KRH08607	Soybean	cytosol	18.49	25.85
VIT_14s0030g02280.t01	Wine grape	plastid	18.49	25.85
AT1G62720.1	Thale cress	mitochondrion	15.94	25.77
Solyc06g007810.1.1	Tomato	cytosol	8.8	25.75
VIT_14s0081g00280.t01	Wine grape	mitochondrion	20.92	25.67
KRH09082	Soybean	cytosol	13.27	25.49
PGSC0003DMT400008757	Potato	cytosol	16.07	25.3
Bra026884.1-P	Field mustard	cytosol	14.8	25.27
AT3G16710.1	Thale cress	mitochondrion	16.33	25.25
Bra036651.1-P	Field mustard	mitochondrion	17.22	25.23
KRH09097	Soybean	plastid	18.62	25.04
PGSC0003DMT400025074	Potato	cytosol	17.6	25.0
Bra026882.1-P	Field mustard	cytosol	16.96	24.91
AT1G64583.1	Thale cress	mitochondrion	16.2	24.8
KRH09095	Soybean	plastid	18.49	24.79
Solyc06g007740.1.1	Tomato	cytosol	18.62	24.75
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.05	24.74
Bra027029.1-P	Field mustard	mitochondrion	7.65	24.69
AT1G64580.1	Thale cress	mitochondrion	16.45	24.67
PGSC0003DMT400053185	Potato	mitochondrion	18.49	24.58
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.96	24.49
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.39	24.48
AT1G62670.1	Thale cress	mitochondrion	19.64	24.44
AT1G63130.1	Thale cress	mitochondrion	19.64	24.44
PGSC0003DMT400025087	Potato	endoplasmic reticulum	15.43	24.44
AT1G63080.3	Thale cress	mitochondrion	19.13	24.43
AT1G63070.1	Thale cress	mitochondrion	18.37	24.41
AT1G62910.1	Thale cress	mitochondrion	19.64	24.37
Solyc06g007300.1.1	Tomato	extracellular	18.37	24.32
Bra031731.1-P	Field mustard	mitochondrion	15.69	24.21
AT1G62930.1	Thale cress	plastid	19.39	24.17
PGSC0003DMT400056663	Potato	plastid	18.11	24.15
AT1G62914.1	Thale cress	mitochondrion	16.2	24.05
PGSC0003DMT400056665	Potato	mitochondrion	17.98	23.94
AT3G22470.1	Thale cress	cytosol, mitochondrion	18.88	23.91
PGSC0003DMT400025067	Potato	cytosol	14.41	23.74
Bra026971.1-P	Field mustard	mitochondrion	19.01	23.69
AT1G62590.1	Thale cress	mitochondrion	19.13	23.66
PGSC0003DMT400052971	Potato	mitochondrion	17.86	23.61
AT1G06580.1	Thale cress	mitochondrion	15.05	23.6
AT1G63400.1	Thale cress	cytosol, plastid	17.35	23.57
AT1G62680.2	Thale cress	plastid	16.45	23.54
Bra028267.1-P	Field mustard	mitochondrion	18.75	23.48
AT1G12700.2	Thale cress	cytosol	18.49	23.46
PGSC0003DMT400008760	Potato	mitochondrion	17.47	23.38
Bra027726.1-P	Field mustard	mitochondrion	14.03	23.35
AT1G63150.1	Thale cress	mitochondrion	18.62	23.21
AT5G41170.1	Thale cress	mitochondrion	15.56	23.15
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.01	23.14
AT1G12300.1	Thale cress	mitochondrion	18.75	23.08
Bra026954.1-P	Field mustard	mitochondrion	19.13	23.08
Bra026957.1-P	Field mustard	mitochondrion	17.6	22.89
Bra027026.1-P	Field mustard	mitochondrion	15.18	22.75
PGSC0003DMT400053556	Potato	mitochondrion	13.27	22.66
Bra026958.1-P	Field mustard	mitochondrion	18.37	22.61
Bra016762.1-P	Field mustard	mitochondrion	17.47	22.57
Solyc04g080120.1.1	Tomato	extracellular	17.47	22.39
PGSC0003DMT400015293	Potato	mitochondrion	17.35	22.3
PGSC0003DMT400015298	Potato	mitochondrion	17.35	22.3
PGSC0003DMT400053182	Potato	cytosol	16.96	22.2
VIT_14s0030g02260.t01	Wine grape	cytosol	12.5	22.12
Bra026401.1-P	Field mustard	plastid	15.05	22.06
Bra026836.1-P	Field mustard	cytosol, mitochondrion	13.78	22.0
KRH08599	Soybean	cytosol, plastid	18.75	21.97
AT4G26800.2	Thale cress	mitochondrion, plastid	14.29	21.79
KRH09085	Soybean	mitochondrion	19.26	21.45
AT1G64100.2	Thale cress	cytosol	21.17	20.6
KRH12873	Soybean	cytosol	16.96	19.11
Bra027656.1-P	Field mustard	cytosol	21.17	17.64
KRH39064	Soybean	cytosol	21.3	17.23
Bra016758.1-P	Field mustard	plastid	18.88	12.77

Protein Annotations

EnsemblPlants:TraesCS1B01G039200.1	EnsemblPlantsGene:TraesCS1B01G039200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:18867715..18870069

Molecular Weight (calculated)

87240.3 Da

IEP (calculated)

8.526

GRAVY (calculated)

-0.037

Length

784 amino acids

Sequence
(BLAST)

001: MPRLSSTTPM SPLRLRARHS SSTSHPSRIW DPHTAFATAT ERARSGNLTP EDAHHLFDEL LRQANPVQER PLNNLLAALA RAPASAACSD GPALAVNLFS
101: RISQGARRRV AHPTACTYGI LMDCCCRANR QDLALAFFAR LLRTGLKAGV IEVNTLLKGL CRAKRADEAL DILLHRMPEL GCTPNVVAYN TVIHGFFREG
201: QVGKACNLFH EMRQQGVTPD VVTYNSVIDA LCKAKAMDKA EYFLGQMVDD GVVSDNVTYN SLIHGYSSSG HWKEAVRVFK EMTSRRVTPD LHTYNMFMTF
301: LCNHGRSKEA AGIFDSMAMK GLKPDNVSYA IRLHGYATEG CLVDMINLFN SMERDCILPD CRIFSILIYA YAKSGKLDKA MLIFNEMQKQ GVSPNAVTYS
401: TVIDAFCKKG QLDDAMIKFN QMIDTGVRQG TAVYRSLIQG FCTHGDLVKA KELLTEMMNK GIPPPDIKFF HSIMQNLCTE GRVIEARDIL GLIAHIGMRP
501: NVCTFNILIG GYCLVRKMAD ASKVFDDMVS YGLEPCNFTY GILINGYCKN RRIDDGLILF KEMLHKGLKP TTVNYNVILD GLFLAGQTVA AKEKFDEMVE
601: SGVSVCIDTY SIVLGGLCRN SCSSEAITLF RKLSAMNVKF DIKIVNIIIG AFYRVKRNQE AKDLFAAIPA NGLVPNAVTY TIMMTNLIKE GSVEEADNLF
701: LSMEKSGSTA NSWMLNHIIR RLLERGEIVK AGNYMSKVDV KSYSLEAKTV SLLISLFSRE GEYRDHIKLL PIKYQFLEKP ATVE

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.