Factsheet for TraesCS6B01G127400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G017870.2	Barley	mitochondrion	49.88	72.0
TraesCS6D01G083100.1	Wheat	cytosol	75.98	67.14
TraesCS6B01G127200.1	Wheat	cytosol	51.04	64.24
TraesCS6B01G127500.1	Wheat	cytosol	71.59	63.27
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	65.59	56.24
TraesCS6B01G129100.1	Wheat	cytosol, plastid	36.26	54.51
TraesCS1B01G315500.1	Wheat	mitochondrion	34.64	46.73
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	46.42	45.79
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	32.56	43.38
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	34.87	39.84
TraesCS1B01G072300.1	Wheat	plastid	52.19	39.79
TraesCS2B01G126900.1	Wheat	cytosol	34.41	39.01
TraesCS1B01G092600.1	Wheat	plastid	44.57	37.33
TraesCS1B01G073200.1	Wheat	cytosol	22.4	32.01
TraesCS1B01G086000.1	Wheat	plastid	50.58	31.92
TraesCS1B01G038200.1	Wheat	mitochondrion	46.19	31.6
Solyc06g007280.2.1	Tomato	cytosol	18.01	30.59
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	54.5	30.26
TraesCS1B01G072700.1	Wheat	cytosol	33.72	28.63
KXG28799	Sorghum	plastid	50.12	28.55
TraesCS1B01G085900.1	Wheat	mitochondrion	52.42	27.89
TraesCS7B01G469500.1	Wheat	cytosol	35.8	27.58
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	41.8	27.26
TraesCS2B01G560700.1	Wheat	plastid	48.27	27.11
Zm00001d007531_P001	Maize	plastid	50.58	26.9
Zm00001d007555_P001	Maize	plastid	50.35	26.78
TraesCS1B01G071600.1	Wheat	mitochondrion	52.42	26.77
Zm00001d007548_P001	Maize	plastid	50.12	26.66
TraesCS1B01G038500.1	Wheat	mitochondrion	48.5	26.58
Zm00001d007559_P001	Maize	plastid	50.12	26.56
TraesCS1B01G092500.1	Wheat	mitochondrion	47.58	26.31
TraesCS1B01G085300.1	Wheat	mitochondrion	48.04	26.26
TraesCS1B01G039200.1	Wheat	mitochondrion	47.34	26.15
TraesCS1B01G072400.1	Wheat	cytosol	41.8	26.04
Zm00001d007534_P001	Maize	plastid	46.42	25.87
TraesCS1B01G072900.2	Wheat	mitochondrion	51.27	25.43
TraesCS1B01G039100.1	Wheat	mitochondrion	45.5	25.16
TraesCS6B01G021600.1	Wheat	mitochondrion	41.57	25.14
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	40.88	24.76
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	40.18	24.34
TraesCS1B01G085400.1	Wheat	cytosol	32.56	22.0
KRH40513	Soybean	plastid	17.78	21.94
KRH09084	Soybean	plastid	25.87	21.92
TraesCS1B01G075300.1	Wheat	cytosol	29.79	21.61
TraesCS1B01G039700.1	Wheat	cytosol	29.56	21.05
TraesCS1B01G038400.1	Wheat	cytosol	29.33	20.89
KRH39054	Soybean	cytosol	23.56	20.52
KRH39004	Soybean	cytosol	23.33	20.32
KRH39057	Soybean	cytosol	23.33	20.32
KRH39072	Soybean	cytosol	23.09	20.16
KRH39112	Soybean	cytosol	22.86	19.92
VIT_12s0028g02320.t01	Wine grape	mitochondrion	21.94	19.92
KRH09121	Soybean	mitochondrion	24.48	19.85
TraesCS2B01G559900.1	Wheat	cytosol	24.48	19.56
KRH39074	Soybean	cytosol	22.4	19.52
TraesCS1B01G073100.1	Wheat	cytosol	27.25	19.47
KRH39066	Soybean	cytosol	24.48	19.1
KRH09154	Soybean	mitochondrion	24.48	19.06
KRH39050	Soybean	mitochondrion	23.33	18.98
KRH08636	Soybean	cytosol	22.86	18.97
KRH08607	Soybean	cytosol	24.25	18.72
KRH09095	Soybean	plastid	25.17	18.63
TraesCS2B01G560300.1	Wheat	cytosol	24.48	18.63
KRH17148	Soybean	mitochondrion	23.33	18.53
KRH09097	Soybean	plastid	24.94	18.52
AT5G16640.1	Thale cress	mitochondrion	21.48	18.45
KRH08639	Soybean	mitochondrion, plastid	23.79	18.23
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	21.25	18.22
AT1G62914.1	Thale cress	mitochondrion	22.17	18.18
KRH48615	Soybean	mitochondrion	22.86	18.17
Bra036649.1-P	Field mustard	cytosol	16.4	18.16
KRH31646	Soybean	cytosol	21.71	18.15
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	21.94	18.1
Bra026958.1-P	Field mustard	mitochondrion	26.56	18.05
KRH08625	Soybean	plastid	23.79	17.88
KRH40400	Soybean	plastid	23.79	17.85
KRH08628	Soybean	plastid	22.63	17.75
AT1G63400.1	Thale cress	cytosol, plastid	23.56	17.68
PGSC0003DMT400056665	Potato	mitochondrion	24.02	17.66
KRH09082	Soybean	cytosol	16.63	17.65
VIT_14s0030g02280.t01	Wine grape	plastid	22.86	17.65
AT1G63080.3	Thale cress	mitochondrion	24.71	17.43
Bra026882.1-P	Field mustard	cytosol	21.48	17.42
VIT_14s0081g00110.t01	Wine grape	cytosol	19.63	17.31
KRH08277	Soybean	plastid	22.63	17.28
VIT_14s0081g00270.t01	Wine grape	plastid	23.09	17.24
PGSC0003DMT400053556	Potato	mitochondrion	18.24	17.21
PGSC0003DMT400056663	Potato	plastid	23.33	17.18
PGSC0003DMT400025087	Potato	endoplasmic reticulum	19.63	17.17
Solyc06g007740.1.1	Tomato	cytosol	23.33	17.12
KRH41817	Soybean	mitochondrion	21.94	17.12
AT1G12775.1	Thale cress	cytosol, mitochondrion	25.4	17.08
Bra021192.1-P	Field mustard	plastid	19.86	17.06
PGSC0003DMT400025067	Potato	cytosol	18.71	17.02
AT1G62930.1	Thale cress	plastid	24.71	17.01
Bra026971.1-P	Field mustard	mitochondrion	24.71	17.01
KRH08671	Soybean	cytosol, mitochondrion	21.71	17.0
Bra028267.1-P	Field mustard	mitochondrion	24.48	16.93
AT1G12620.1	Thale cress	cytosol, mitochondrion	24.25	16.91
AT1G64580.1	Thale cress	mitochondrion	20.32	16.83
AT1G62670.1	Thale cress	mitochondrion	24.48	16.83
Bra036651.1-P	Field mustard	mitochondrion	20.79	16.82
VIT_14s0081g00120.t01	Wine grape	plastid	22.63	16.81
AT1G64583.1	Thale cress	mitochondrion	19.86	16.8
Bra026957.1-P	Field mustard	mitochondrion	23.33	16.75
Solyc06g005220.2.1	Tomato	cytosol	15.7	16.75
Solyc06g007300.1.1	Tomato	extracellular	22.86	16.72
AT1G63130.1	Thale cress	mitochondrion	24.25	16.67
Bra027636.1-P	Field mustard	cytosol	12.47	16.67
AT1G12300.1	Thale cress	mitochondrion	24.48	16.64
Bra016762.1-P	Field mustard	mitochondrion	23.33	16.64
Bra026954.1-P	Field mustard	mitochondrion	24.94	16.62
PGSC0003DMT400053185	Potato	mitochondrion	22.63	16.61
Bra026884.1-P	Field mustard	cytosol	17.55	16.56
AT4G26800.2	Thale cress	mitochondrion, plastid	19.63	16.54
AT1G62720.1	Thale cress	mitochondrion	18.48	16.49
AT3G22470.1	Thale cress	cytosol, mitochondrion	23.56	16.48
PGSC0003DMT400008757	Potato	cytosol	18.94	16.47
Bra027029.1-P	Field mustard	mitochondrion	9.24	16.46
AT1G63330.2	Thale cress	cytosol	21.25	16.46
Bra027026.1-P	Field mustard	mitochondrion	19.86	16.44
Bra025516.1-P	Field mustard	cytosol, mitochondrion	18.01	16.35
AT5G41170.1	Thale cress	mitochondrion	19.86	16.32
AT1G62910.1	Thale cress	mitochondrion	23.79	16.3
AT1G63070.1	Thale cress	mitochondrion	22.17	16.27
PGSC0003DMT400008760	Potato	mitochondrion	21.94	16.21
AT1G06580.1	Thale cress	mitochondrion	18.71	16.2
KRH25652	Soybean	cytosol, golgi	20.09	16.11
PGSC0003DMT400052971	Potato	mitochondrion	21.94	16.02
AT1G12700.2	Thale cress	cytosol	22.86	16.02
AT3G16710.1	Thale cress	mitochondrion	18.71	15.98
AT1G63150.1	Thale cress	mitochondrion	23.09	15.9
Bra026401.1-P	Field mustard	plastid	19.63	15.89
PGSC0003DMT400025074	Potato	cytosol	20.09	15.76
PGSC0003DMT400052977	Potato	cytosol	14.09	15.68
VIT_14s0081g00280.t01	Wine grape	mitochondrion	23.09	15.65
AT1G62590.1	Thale cress	mitochondrion	22.86	15.62
PGSC0003DMT400053182	Potato	cytosol	21.25	15.36
AT1G62680.2	Thale cress	plastid	19.4	15.33
Solyc04g080120.1.1	Tomato	extracellular	21.02	14.87
Bra031731.1-P	Field mustard	mitochondrion	17.32	14.76
PGSC0003DMT400015293	Potato	mitochondrion	20.55	14.59
PGSC0003DMT400015298	Potato	mitochondrion	20.55	14.59
KXG35774	Sorghum	cytosol, mitochondrion	15.7	14.38
KRH08599	Soybean	cytosol, plastid	22.17	14.35
Bra027726.1-P	Field mustard	mitochondrion	15.47	14.23
Bra006187.1-P	Field mustard	plastid	9.47	14.09
KRH09085	Soybean	mitochondrion	22.86	14.06
TraesCS6B01G114300.1	Wheat	cytosol	12.47	13.88
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.7	13.85
Bra027658.1-P	Field mustard	cytosol, mitochondrion	17.32	13.81
TraesCS1B01G038300.1	Wheat	plastid	17.32	13.74
AT1G64100.2	Thale cress	cytosol	23.79	12.78
PGSC0003DMT400008759	Potato	cytosol	9.24	12.54
KRH12873	Soybean	cytosol	19.63	12.21
Bra027656.1-P	Field mustard	cytosol	24.94	11.48
KRH39064	Soybean	cytosol	25.17	11.25
TraesCS1B01G084800.1	Wheat	cytosol	10.16	9.48
VIT_14s0030g02260.t01	Wine grape	cytosol	9.24	9.03
Bra016758.1-P	Field mustard	plastid	24.02	8.97
Solyc06g007810.1.1	Tomato	cytosol	4.39	7.09
TraesCS6B01G341800.2	Wheat	cytosol	2.08	2.26
CDX68679	Canola	cytosol	0.23	0.87
TraesCS1B01G038600.1	Wheat	cytosol	0.46	0.55

Protein Annotations

EnsemblPlants:TraesCS6B01G127400.1	EnsemblPlantsGene:TraesCS6B01G127400	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr6B:-:123017481..123018782

Molecular Weight (calculated)

47920.9 Da

IEP (calculated)

6.907

GRAVY (calculated)

0.242

Length

433 amino acids

Sequence
(BLAST)

001: MSRLQVRSFS SPVSSRANDL LTELHGHLGF GTLRPELAHQ LFDEMLRQPV PVSARALNGL FAALACAPPS AACTDGPVLA IHLFNRMARA GCRRVIALTS
101: HTYSILIECC CRTRRPDLGP SFFTHLLKTG VTADIVIYSG LFKCLCDLKC TEEALDMLLH RMPNDVSDAI SYSVILKSLC DNGRSQLALD VLHIMTKKGA
201: DYSPDVFAYN MVIDGFFKEG EVSKACDLFH EMIQQGVVPD VAMYTSIINA LCKARAMDKA EVVLRSMVHN GVQPDVVTYT IMIQGYSTLR QLKEVARLLK
301: VMRSQGVMPS VVTYNSLMTC LCKNGRFKEA VEIFYSMAVK GLKPNVISYS IILHGYAKEG SLVAMIDLYQ LMAAEGVIPD LHCFNILIAA YAEYGMMDVA
401: MLFFEDMLKQ GVNPNEVTIF VCDSWIMQNG QDG

Best Arabidopsis Sequence Match ( AT1G12620.1 )
(BLAST)

001: MRGLIQTRLL ETGTLRTALF LSCYGRVFSS VSDGKGKVSY RERLRSGIVD IKEDDAVDLF QEMTRSRPRP RLIDFSRLFS VVARTKQYDL VLDLCKQMEL
101: KGIAHNLYTL SIMINCCCRC RKLSLAFSAM GKIIKLGYEP DTVTFSTLIN GLCLEGRVSE ALELVDRMVE MGHKPTLITL NALVNGLCLN GKVSDAVLLI
201: DRMVETGFQP NEVTYGPVLK VMCKSGQTAL AMELLRKMEE RKIKLDAVKY SIIIDGLCKD GSLDNAFNLF NEMEIKGFKA DIIIYTTLIR GFCYAGRWDD
301: GAKLLRDMIK RKITPDVVAF SALIDCFVKE GKLREAEELH KEMIQRGISP DTVTYTSLID GFCKENQLDK ANHMLDLMVS KGCGPNIRTF NILINGYCKA
401: NLIDDGLELF RKMSLRGVVA DTVTYNTLIQ GFCELGKLEV AKELFQEMVS RRVRPDIVSY KILLDGLCDN GEPEKALEIF EKIEKSKMEL DIGIYNIIIH
501: GMCNASKVDD AWDLFCSLPL KGVKPDVKTY NIMIGGLCKK GSLSEADLLF RKMEEDGHSP NGCTYNILIR AHLGEGDATK SAKLIEEIKR CGFSVDASTV
601: KMVVDMLSDG RLKKSFLDML S

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12620 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASZ8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.