Factsheet for TraesCS1B01G075300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G058400.1	Wheat	cytosol	76.21	88.35
TraesCS1B01G073100.1	Wheat	cytosol	71.36	70.3
TraesCS6B01G341800.2	Wheat	cytosol	46.23	69.17
TraesCS1B01G084800.1	Wheat	cytosol	53.27	68.53
TraesCS1A01G057300.1	Wheat	cytosol	81.07	67.41
TraesCS1B01G085400.1	Wheat	cytosol	70.02	65.21
TraesCS1B01G072400.1	Wheat	cytosol	74.71	64.17
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	68.51	61.6
TraesCS1B01G039700.1	Wheat	cytosol	60.64	59.54
TraesCS1B01G038600.1	Wheat	cytosol	35.85	58.95
TraesCS1B01G038400.1	Wheat	cytosol	59.46	58.39
TraesCS2B01G126900.1	Wheat	cytosol	37.02	57.85
TraesCS1B01G072700.1	Wheat	cytosol	49.08	57.45
TraesCS2B01G559900.1	Wheat	cytosol	50.25	55.35
TraesCS2B01G560300.1	Wheat	cytosol	52.43	55.01
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	71.19	54.49
TraesCS1B01G085300.1	Wheat	mitochondrion	69.68	52.53
TraesCS1B01G092500.1	Wheat	mitochondrion	68.51	52.23
KXG35774	Sorghum	cytosol, mitochondrion	41.37	52.22
TraesCS1B01G085900.1	Wheat	mitochondrion	69.68	51.11
TraesCS1B01G072900.2	Wheat	mitochondrion	71.19	48.68
TraesCS1B01G071600.1	Wheat	mitochondrion	67.17	47.29
TraesCS7B01G469500.1	Wheat	cytosol	44.22	46.98
TraesCS1B01G039200.1	Wheat	mitochondrion	61.14	46.56
TraesCS1B01G038500.1	Wheat	mitochondrion	61.47	46.46
TraesCS1B01G039100.1	Wheat	mitochondrion	60.47	46.1
TraesCS6B01G127200.1	Wheat	cytosol	26.47	45.93
Zm00001d007534_P001	Maize	plastid	56.45	43.37
TraesCS1B01G086000.1	Wheat	plastid	48.91	42.57
TraesCS2B01G560700.1	Wheat	plastid	54.94	42.54
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	54.1	42.17
Zm00001d007555_P001	Maize	plastid	56.78	41.65
Zm00001d007548_P001	Maize	plastid	56.62	41.52
KXG28799	Sorghum	plastid	52.76	41.45
TraesCS6B01G114300.1	Wheat	cytosol	26.97	41.39
Zm00001d007559_P001	Maize	plastid	56.62	41.37
Zm00001d007531_P001	Maize	plastid	56.28	41.28
TraesCS1B01G038200.1	Wheat	mitochondrion	43.22	40.76
TraesCS1B01G038300.1	Wheat	plastid	36.85	40.29
TraesCS1B01G073200.1	Wheat	cytosol	20.27	39.93
Os04t0351333-00	Rice	cytosol	56.78	38.57
TraesCS1B01G072300.1	Wheat	plastid	36.68	38.56
TraesCS6B01G021600.1	Wheat	mitochondrion	43.55	36.31
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	42.38	35.38
TraesCS1B01G092600.1	Wheat	plastid	30.49	35.2
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	41.04	34.27
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	27.3	32.28
TraesCS6B01G127500.1	Wheat	cytosol	26.47	32.24
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	22.95	31.21
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	21.61	29.79
Bra027636.1-P	Field mustard	cytosol	15.91	29.32
PGSC0003DMT400052977	Potato	cytosol	19.1	29.31
Solyc06g007280.2.1	Tomato	cytosol	11.56	27.06
Solyc06g005220.2.1	Tomato	cytosol	18.26	26.85
KRH09082	Soybean	cytosol	18.26	26.72
PGSC0003DMT400008759	Potato	cytosol	14.24	26.65
KRH39004	Soybean	cytosol	22.11	26.56
Solyc06g007810.1.1	Tomato	cytosol	11.89	26.49
KRH39054	Soybean	cytosol	21.94	26.36
KRH39057	Soybean	cytosol	21.78	26.16
Os04t0349600-01	Rice	plastid	16.75	25.84
KRH39072	Soybean	cytosol	21.44	25.81
KRH39074	Soybean	cytosol	21.27	25.55
Bra026884.1-P	Field mustard	cytosol	19.43	25.27
VIT_14s0081g00110.t01	Wine grape	cytosol	20.6	25.05
KRH39112	Soybean	cytosol	20.6	24.75
Bra027029.1-P	Field mustard	mitochondrion	9.88	24.28
Bra006187.1-P	Field mustard	plastid	11.73	24.05
PGSC0003DMT400025067	Potato	cytosol	18.93	23.74
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.76	23.48
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.77	23.37
KRH17148	Soybean	mitochondrion	21.11	23.12
KRH39066	Soybean	cytosol	21.44	23.06
CDX68679	Canola	cytosol	4.36	22.61
KRH08636	Soybean	cytosol	19.77	22.61
PGSC0003DMT400025087	Potato	endoplasmic reticulum	18.59	22.42
KRH09084	Soybean	plastid	19.1	22.31
KRH08639	Soybean	mitochondrion, plastid	21.11	22.3
KRH25652	Soybean	cytosol, golgi	20.1	22.22
KRH09154	Soybean	mitochondrion	20.6	22.12
KRH08607	Soybean	cytosol	20.77	22.1
Bra026882.1-P	Field mustard	cytosol	19.6	21.91
VIT_14s0030g02260.t01	Wine grape	cytosol	16.25	21.9
KRH48615	Soybean	mitochondrion	19.93	21.83
KRH08628	Soybean	plastid	20.1	21.74
KRH08277	Soybean	plastid	20.6	21.69
Bra031731.1-P	Field mustard	mitochondrion	18.43	21.65
KRH08671	Soybean	cytosol, mitochondrion	19.93	21.52
Bra036649.1-P	Field mustard	cytosol	14.07	21.48
KRH09121	Soybean	mitochondrion	19.1	21.35
TraesCS1B01G315500.1	Wheat	mitochondrion	11.39	21.18
PGSC0003DMT400008757	Potato	cytosol	17.59	21.08
PGSC0003DMT400025074	Potato	cytosol	19.43	21.01
KRH41817	Soybean	mitochondrion	19.43	20.9
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	13.23	20.84
KRH08625	Soybean	plastid	19.93	20.66
AT5G16640.1	Thale cress	mitochondrion	17.42	20.63
KRH40400	Soybean	plastid	19.93	20.62
VIT_14s0081g00120.t01	Wine grape	plastid	20.1	20.58
AT1G63330.2	Thale cress	cytosol	19.26	20.57
KRH31646	Soybean	cytosol	17.59	20.27
PGSC0003DMT400052971	Potato	mitochondrion	20.1	20.24
KRH40513	Soybean	plastid	11.89	20.23
Solyc06g007740.1.1	Tomato	cytosol	19.93	20.17
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	17.59	20.0
Bra016762.1-P	Field mustard	mitochondrion	20.27	19.93
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.91	19.92
PGSC0003DMT400053185	Potato	mitochondrion	19.6	19.83
Bra026957.1-P	Field mustard	mitochondrion	19.93	19.73
AT1G12700.2	Thale cress	cytosol	20.27	19.58
PGSC0003DMT400053182	Potato	cytosol	19.6	19.53
AT3G16710.1	Thale cress	mitochondrion	16.58	19.53
PGSC0003DMT400056665	Potato	mitochondrion	19.26	19.52
VIT_14s0081g00270.t01	Wine grape	plastid	18.93	19.48
Bra021192.1-P	Field mustard	plastid	16.42	19.44
Solyc06g007300.1.1	Tomato	extracellular	19.26	19.43
Bra027658.1-P	Field mustard	cytosol, mitochondrion	17.59	19.34
Bra026958.1-P	Field mustard	mitochondrion	20.6	19.31
Bra026971.1-P	Field mustard	mitochondrion	20.27	19.24
AT3G22470.1	Thale cress	cytosol, mitochondrion	19.93	19.22
AT1G12300.1	Thale cress	mitochondrion	20.44	19.15
PGSC0003DMT400008760	Potato	mitochondrion	18.76	19.11
VIT_14s0081g00280.t01	Wine grape	mitochondrion	20.44	19.09
AT1G63130.1	Thale cress	mitochondrion	20.1	19.05
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.77	19.0
Bra026954.1-P	Field mustard	mitochondrion	20.6	18.92
AT1G62930.1	Thale cress	plastid	19.93	18.92
PGSC0003DMT400056663	Potato	plastid	18.59	18.88
AT1G63070.1	Thale cress	mitochondrion	18.59	18.81
KRH39050	Soybean	mitochondrion	16.75	18.8
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	10.22	18.77
KRH09097	Soybean	plastid	18.26	18.7
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.1	18.63
KRH09095	Soybean	plastid	18.26	18.63
KRH08599	Soybean	cytosol, plastid	20.77	18.54
Bra036651.1-P	Field mustard	mitochondrion	16.58	18.5
AT1G62590.1	Thale cress	mitochondrion	19.6	18.45
Bra028267.1-P	Field mustard	mitochondrion	19.26	18.37
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.08	18.33
Solyc04g080120.1.1	Tomato	extracellular	18.76	18.3
AT1G62680.2	Thale cress	plastid	16.75	18.25
AT5G41170.1	Thale cress	mitochondrion	16.08	18.22
AT1G62910.1	Thale cress	mitochondrion	19.26	18.2
AT1G64580.1	Thale cress	mitochondrion	15.91	18.16
AT1G62670.1	Thale cress	mitochondrion	19.1	18.1
VIT_14s0030g02280.t01	Wine grape	plastid	16.92	18.0
AT1G64583.1	Thale cress	mitochondrion	15.41	17.97
AT1G63150.1	Thale cress	mitochondrion	18.76	17.81
Bra027026.1-P	Field mustard	mitochondrion	15.41	17.59
PGSC0003DMT400015293	Potato	mitochondrion	17.92	17.54
PGSC0003DMT400015298	Potato	mitochondrion	17.92	17.54
AT1G62720.1	Thale cress	mitochondrion	14.24	17.53
AT1G63080.3	Thale cress	mitochondrion	17.76	17.26
AT1G63400.1	Thale cress	cytosol, plastid	16.58	17.16
KRH12873	Soybean	cytosol	19.77	16.95
AT1G06580.1	Thale cress	mitochondrion	14.07	16.8
Bra026401.1-P	Field mustard	plastid	14.91	16.64
PGSC0003DMT400053556	Potato	mitochondrion	12.73	16.56
AT1G64100.2	Thale cress	cytosol	21.94	16.25
AT4G26800.2	Thale cress	mitochondrion, plastid	13.74	15.95
KRH09085	Soybean	mitochondrion	18.59	15.77
AT1G62914.1	Thale cress	mitochondrion	13.9	15.72
Bra027656.1-P	Field mustard	cytosol	23.95	15.2
Bra027726.1-P	Field mustard	mitochondrion	11.89	15.07
KRH39064	Soybean	cytosol	22.45	13.83
Bra016758.1-P	Field mustard	plastid	19.93	10.27
TraesCS6B01G129100.1	Wheat	cytosol, plastid	3.52	7.29

Protein Annotations

EnsemblPlants:TraesCS1B01G075300.1	EnsemblPlantsGene:TraesCS1B01G075300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:58326245..58328038

Molecular Weight (calculated)

66273.2 Da

IEP (calculated)

7.629

GRAVY (calculated)

0.069

Length

597 amino acids

Sequence
(BLAST)

001: MWWHIAQSSM VFFKEGKTGK ACNLFHEMIH QGVDPDVVTY NLIIDALCKA RAMDKAELVL QQMVDKGVQP NTVTYNCMIH GYSTSGQLKE AAKMFRKMTS
101: HGLVPNAVTC NLLMTSLCKH GRSKEAAEIF YSMTAKGHKL DAVSYRILLH GYATEGCFAD MIDLFNSMES NGFVADCHVF TILIDAYAKR GMMDEAMLIF
201: TEMREKGVSP NVVTYSTVIA AFCRLRRLAN AMDKFNEMTD MGVQPDTTVY HSLIQGFCMH GDLVKVKEFV SEMMNKGIPR PDIAFFNSVI NSLCKEGRVM
301: NAQGIFDLVI GMGERPNVIT FSSLIDGYGL VGQMGEALGV LDAMVSAGIE PNVVTYSSIL DGYCRNGRIN DALILFREMP RKRIKPNTVT YGIMLDGLFR
401: AGRTVAAREM FHEMTERGIP VSISIYNIIL GGLCKNNCAD EAIALFQKLG AMNVKFDIIT LNTMINAMFK VRRREEANDL FAAVSASGLV PNASTYGIVI
501: KNILKEGSVE EVDNMFSSME KSGCAPSSRL INYIIRMLLE KGEIARAGNY LSKVDGKIIS LEASTTSLLL SLFSREGKYR ENIELLPAKY QFFNGFG

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.