Factsheet for TraesCS1A01G031700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	85.96	80.43
TraesCS1B01G038200.1	Wheat	mitochondrion	66.8	78.2
TraesCS1B01G038500.1	Wheat	mitochondrion	81.51	76.46
TraesCS1B01G038400.1	Wheat	cytosol	61.0	74.34
TraesCS1B01G039200.1	Wheat	mitochondrion	78.0	73.72
TraesCS1A01G031600.1	Wheat	cytosol	64.91	72.66
TraesCS1B01G039100.1	Wheat	mitochondrion	76.38	72.29
HORVU1Hr1G004750.6	Barley	plastid	76.65	71.18
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	65.86	69.81
TraesCS1B01G038300.1	Wheat	plastid	51.01	69.23
TraesCS1B01G038600.1	Wheat	cytosol	33.33	68.04
TraesCS1A01G073800.1	Wheat	mitochondrion	25.91	57.66
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	38.6	55.97
TraesCS1A01G067700.1	Wheat	extracellular	25.37	55.79
TraesCS1A01G054700.2	Wheat	mitochondrion	58.43	53.33
TraesCS1A01G067600.1	Wheat	mitochondrion	58.43	53.26
TraesCS2A01G530600.1	Wheat	cytosol	54.66	52.94
TraesCS1A01G067400.1	Wheat	mitochondrion	58.7	52.73
KXG28799	Sorghum	plastid	53.44	52.11
Zm00001d007534_P001	Maize	plastid	54.52	51.99
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	26.45	51.85
TraesCS2A01G531000.1	Wheat	golgi	47.23	51.55
TraesCS1A01G054800.1	Wheat	cytosol	40.35	51.37
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	49.66	51.33
TraesCS1A01G055800.1	Wheat	mitochondrion	53.04	50.97
TraesCS2A01G526200.1	Wheat	golgi	46.69	50.81
TraesCS6A01G311600.1	Wheat	mitochondrion	57.09	50.6
TraesCS1A01G057300.1	Wheat	cytosol	48.99	50.56
TraesCS1A01G067000.1	Wheat	mitochondrion	48.58	50.28
TraesCS1A01G054500.1	Wheat	mitochondrion	52.9	50.26
Zm00001d007531_P001	Maize	plastid	54.79	49.88
TraesCS1A01G066600.1	Wheat	mitochondrion	17.68	49.81
TraesCS1A01G074000.1	Wheat	mitochondrion	18.89	49.47
Zm00001d007548_P001	Maize	plastid	54.25	49.39
Zm00001d007555_P001	Maize	plastid	54.25	49.39
Zm00001d007559_P001	Maize	plastid	54.39	49.33
KXG35774	Sorghum	cytosol, mitochondrion	31.31	49.05
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	33.2	48.91
TraesCS1A01G055500.1	Wheat	mitochondrion	14.3	48.85
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	31.58	48.35
TraesCS2A01G531100.1	Wheat	cytosol	37.11	48.33
TraesCS1A01G073600.1	Wheat	mitochondrion	25.1	47.45
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	48.99	47.39
TraesCS1A01G067800.1	Wheat	cytosol	23.75	47.06
TraesCS1A01G073700.1	Wheat	cytosol	24.29	46.75
TraesCS1A01G056000.1	Wheat	cytosol	25.1	46.27
Os04t0349600-01	Rice	plastid	23.35	44.7
TraesCS1A01G055600.1	Wheat	cytosol	19.43	44.31
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	39.27	40.76
TraesCS6A01G015000.1	Wheat	mitochondrion	22.27	39.76
Os04t0351333-00	Rice	cytosol	46.83	39.48
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	12.96	37.94
TraesCS6A01G083000.1	Wheat	cytosol	23.21	37.72
TraesCS6A01G014600.1	Wheat	cytosol	19.97	37.47
Solyc06g007280.2.1	Tomato	cytosol	11.34	32.94
KRH39004	Soybean	cytosol	21.59	32.19
VIT_12s0028g02320.t01	Wine grape	mitochondrion	20.65	32.08
KRH39057	Soybean	cytosol	21.32	31.79
Bra027636.1-P	Field mustard	cytosol	13.9	31.79
KRH39072	Soybean	cytosol	21.19	31.65
KRH39054	Soybean	cytosol	21.19	31.59
KRH39112	Soybean	cytosol	21.05	31.39
VIT_14s0081g00110.t01	Wine grape	cytosol	20.78	31.36
KRH39074	Soybean	cytosol	20.92	31.19
Solyc06g005220.2.1	Tomato	cytosol	16.87	30.79
Bra036649.1-P	Field mustard	cytosol	15.92	30.18
KRH48615	Soybean	mitochondrion	21.86	29.72
KRH40513	Soybean	plastid	14.04	29.63
PGSC0003DMT400052977	Potato	cytosol	15.52	29.56
KRH09084	Soybean	plastid	20.38	29.55
KRH39066	Soybean	cytosol	21.73	29.01
AT5G16640.1	Thale cress	mitochondrion	19.7	28.97
PGSC0003DMT400008759	Potato	cytosol	12.42	28.84
VIT_14s0081g00120.t01	Wine grape	plastid	22.54	28.64
VIT_14s0081g00270.t01	Wine grape	plastid	22.4	28.62
Bra006187.1-P	Field mustard	plastid	11.07	28.18
Bra026882.1-P	Field mustard	cytosol	20.24	28.09
AT3G16710.1	Thale cress	mitochondrion	19.16	28.01
KRH08636	Soybean	cytosol	19.7	27.97
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.03	27.92
PGSC0003DMT400008757	Potato	cytosol	18.76	27.91
KRH09154	Soybean	mitochondrion	20.92	27.88
KRH08671	Soybean	cytosol, mitochondrion	20.78	27.85
Bra021192.1-P	Field mustard	plastid	18.89	27.78
KRH08628	Soybean	plastid	20.65	27.72
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.57	27.62
KRH08639	Soybean	mitochondrion, plastid	21.05	27.61
KRH41817	Soybean	mitochondrion	20.65	27.57
Bra026884.1-P	Field mustard	cytosol	17.0	27.45
KRH31646	Soybean	cytosol	19.16	27.41
AT1G06580.1	Thale cress	mitochondrion	18.49	27.4
AT1G64580.1	Thale cress	mitochondrion	19.3	27.34
KRH17148	Soybean	mitochondrion	20.11	27.34
KRH08625	Soybean	plastid	21.19	27.26
KRH39050	Soybean	mitochondrion	19.57	27.26
AT1G64583.1	Thale cress	mitochondrion	18.76	27.15
AT1G63330.2	Thale cress	cytosol	20.38	27.01
KRH08277	Soybean	plastid	20.65	26.98
KRH09121	Soybean	mitochondrion	19.43	26.97
CDX68679	Canola	cytosol	4.18	26.96
VIT_14s0030g02280.t01	Wine grape	plastid	20.38	26.92
PGSC0003DMT400025087	Potato	endoplasmic reticulum	17.95	26.87
AT1G62720.1	Thale cress	mitochondrion	17.54	26.8
Bra027029.1-P	Field mustard	mitochondrion	8.77	26.75
KRH09082	Soybean	cytosol	14.71	26.72
AT1G62914.1	Thale cress	mitochondrion	19.03	26.7
KRH40400	Soybean	plastid	20.78	26.69
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.94	26.6
AT1G12620.1	Thale cress	cytosol, mitochondrion	22.27	26.57
Solyc06g007810.1.1	Tomato	cytosol	9.58	26.49
PGSC0003DMT400025074	Potato	cytosol	19.7	26.45
Solyc06g007740.1.1	Tomato	cytosol	21.05	26.44
Bra036651.1-P	Field mustard	mitochondrion	19.03	26.36
AT1G63080.3	Thale cress	mitochondrion	21.73	26.22
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.87	26.21
AT3G22470.1	Thale cress	cytosol, mitochondrion	21.86	26.17
AT1G12300.1	Thale cress	mitochondrion	22.4	26.06
PGSC0003DMT400025067	Potato	cytosol	16.73	26.05
AT1G63400.1	Thale cress	cytosol, plastid	20.24	26.0
PGSC0003DMT400053185	Potato	mitochondrion	20.65	25.93
KRH08607	Soybean	cytosol	19.57	25.85
Solyc06g007300.1.1	Tomato	extracellular	20.65	25.84
KRH25652	Soybean	cytosol, golgi	18.76	25.74
KRH09097	Soybean	plastid	20.24	25.73
AT5G41170.1	Thale cress	mitochondrion	18.22	25.62
Bra026971.1-P	Field mustard	mitochondrion	21.73	25.6
Bra028267.1-P	Field mustard	mitochondrion	21.59	25.56
PGSC0003DMT400053556	Potato	mitochondrion	15.79	25.49
PGSC0003DMT400056665	Potato	mitochondrion	20.24	25.47
Bra026958.1-P	Field mustard	mitochondrion	21.73	25.27
AT1G12700.2	Thale cress	cytosol	21.05	25.24
AT1G63130.1	Thale cress	mitochondrion	21.46	25.24
Bra031731.1-P	Field mustard	mitochondrion	17.27	25.2
PGSC0003DMT400052971	Potato	mitochondrion	20.11	25.13
PGSC0003DMT400008760	Potato	mitochondrion	19.84	25.09
AT1G62670.1	Thale cress	mitochondrion	21.32	25.08
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.35	25.05
Bra016762.1-P	Field mustard	mitochondrion	20.51	25.04
AT1G12775.1	Thale cress	cytosol, mitochondrion	21.73	25.0
PGSC0003DMT400056663	Potato	plastid	19.84	25.0
AT1G62930.1	Thale cress	plastid	21.19	24.96
AT1G63150.1	Thale cress	mitochondrion	21.19	24.96
KRH09095	Soybean	plastid	19.7	24.96
Bra027726.1-P	Field mustard	mitochondrion	15.79	24.84
AT1G63070.1	Thale cress	mitochondrion	19.7	24.75
Bra027026.1-P	Field mustard	mitochondrion	17.41	24.67
Bra026957.1-P	Field mustard	mitochondrion	19.97	24.54
AT1G62910.1	Thale cress	mitochondrion	20.92	24.53
AT4G26800.2	Thale cress	mitochondrion, plastid	17.0	24.51
AT1G62680.2	Thale cress	plastid	18.08	24.45
PGSC0003DMT400053182	Potato	cytosol	19.57	24.21
AT1G62590.1	Thale cress	mitochondrion	20.65	24.13
Bra026401.1-P	Field mustard	plastid	17.41	24.11
Bra026954.1-P	Field mustard	mitochondrion	21.05	24.0
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.79	23.83
Solyc04g080120.1.1	Tomato	extracellular	19.57	23.69
PGSC0003DMT400015293	Potato	mitochondrion	19.16	23.28
PGSC0003DMT400015298	Potato	mitochondrion	19.16	23.28
KRH08599	Soybean	cytosol, plastid	20.11	22.27
KRH09085	Soybean	mitochondrion	20.51	21.59
VIT_14s0030g02260.t01	Wine grape	cytosol	12.82	21.44
AT1G64100.2	Thale cress	cytosol	21.73	19.98
KRH12873	Soybean	cytosol	17.68	18.82
Bra027656.1-P	Field mustard	cytosol	23.75	18.7
KRH39064	Soybean	cytosol	22.94	17.54
Bra016758.1-P	Field mustard	plastid	21.46	13.72

Protein Annotations

EnsemblPlants:TraesCS1A01G031700.1	EnsemblPlantsGene:TraesCS1A01G031700	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:14584912..14587137

Molecular Weight (calculated)

82375.8 Da

IEP (calculated)

8.585

GRAVY (calculated)

0.053

Length

741 amino acids

Sequence
(BLAST)

001: MPRFSSTTPM SPPRLLLLLC ARHSSSTSHP SRIWDPHAAF VAATQRARSG TLTTEDAHHL FDELLRQGNP VQERPLTNFL AALARASASA FFSNGPALAV
101: ALFGRLSRGA GRRVAQPNVF TYGVLMDCYC RARRLDLAIA FFGRLLKTGL EADQVVFSTL LKGLCHAKRS DEALDVLLHR MPELGCTPDV VAYSTVIHGF
201: FKEGQVGKAC NLFHGMAQQG VAPDVVTYNS VIDALCKARA MDKAEYFLGQ MVDSGVVPNN VTYNSLIHGY SSSGHSKEAV RVLKEMTSKG IIPDVFTCNS
301: LMASLCKNGR SKEAAEIFNS MSMKGLKPNT ISYAILLHGY ATEGCLVDMI NLFNSMATDC ILPNCHIFNI LIYAYAKSGK LDKAMLIFKD MQKQGVSPDA
401: VTYSTVIHAF CKKGRLDDAV IKFNQMIDTG VRPEASAYRS LIQGFCTHGD LVKAKEYVTE MMKKGMLPPD IMFFSSIMQK LCTEGRVIEA RDILDLIVRI
501: GMRPNVFMFN ILIGGYCLVC KMEDATKMFE DMVSFGLEPC NITYGILING YCKNRRIDDG LILFQEMLHK GLKPTTFNYN VILDGLFLAG RTVAAKEKFD
601: EMVESGVSVC TDTYSIVLAG LCRNNCSSEV IMLFQKLRAM NMKFNIRIVT IMIDAFYKVR RNQEAKDLFA AIPSNGLVAN VVTYSIMMKN LIKEGSVEEA
701: DTLFINGEER LYCKLLDVKS YYQKVTGKRR DSQGWKLYVE S

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.