Factsheet for TraesCS1A01G031600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G039700.1	Wheat	cytosol	81.27	88.49
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	81.57	77.25
HORVU1Hr1G004750.6	Barley	plastid	81.57	67.67
TraesCS1A01G031700.1	Wheat	plastid	72.66	64.91
TraesCS1A01G073700.1	Wheat	cytosol	35.05	60.26
TraesCS1A01G067800.1	Wheat	cytosol	33.23	58.82
TraesCS1A01G054800.1	Wheat	cytosol	51.21	58.25
TraesCS1A01G056000.1	Wheat	cytosol	35.2	57.96
TraesCS1A01G055600.1	Wheat	cytosol	27.95	56.92
TraesCS2A01G531000.1	Wheat	golgi	58.16	56.7
TraesCS2A01G531100.1	Wheat	cytosol	47.73	55.54
TraesCS1A01G073600.1	Wheat	mitochondrion	32.78	55.36
TraesCS2A01G526200.1	Wheat	golgi	56.34	54.77
TraesCS1A01G067000.1	Wheat	mitochondrion	58.31	53.91
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	41.24	53.42
KXG35774	Sorghum	cytosol, mitochondrion	37.61	52.64
TraesCS1A01G057300.1	Wheat	cytosol	56.95	52.51
TraesCS1A01G067700.1	Wheat	extracellular	26.28	51.63
TraesCS1A01G054500.1	Wheat	mitochondrion	59.67	50.64
TraesCS1A01G067600.1	Wheat	mitochondrion	61.18	49.82
TraesCS2A01G530600.1	Wheat	cytosol	57.4	49.67
Zm00001d007534_P001	Maize	plastid	58.16	49.55
TraesCS1A01G067400.1	Wheat	mitochondrion	61.33	49.21
KXG28799	Sorghum	plastid	56.5	49.21
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	53.17	49.09
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	27.95	48.94
TraesCS6A01G311600.1	Wheat	mitochondrion	61.63	48.8
TraesCS1A01G054700.2	Wheat	mitochondrion	59.52	48.52
TraesCS1A01G055800.1	Wheat	mitochondrion	56.04	48.12
TraesCS6A01G014600.1	Wheat	cytosol	28.55	47.85
Zm00001d007531_P001	Maize	plastid	58.61	47.67
Zm00001d007548_P001	Maize	plastid	58.46	47.54
Zm00001d007559_P001	Maize	plastid	58.46	47.37
Zm00001d007555_P001	Maize	plastid	58.01	47.17
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	51.96	44.91
TraesCS6A01G083000.1	Wheat	cytosol	28.55	41.45
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	43.66	40.48
Os04t0351333-00	Rice	cytosol	53.47	40.27
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	28.85	39.46
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	29.76	39.16
TraesCS1A01G073800.1	Wheat	mitochondrion	18.13	36.04
TraesCS6A01G015000.1	Wheat	mitochondrion	20.39	32.53
Os04t0349600-01	Rice	plastid	18.28	31.27
VIT_14s0081g00110.t01	Wine grape	cytosol	22.96	30.96
PGSC0003DMT400052977	Potato	cytosol	17.98	30.59
Bra027636.1-P	Field mustard	cytosol	14.95	30.56
Solyc06g007280.2.1	Tomato	cytosol	11.63	30.2
VIT_12s0028g02320.t01	Wine grape	mitochondrion	21.75	30.19
Solyc06g005220.2.1	Tomato	cytosol	18.28	29.8
KRH39004	Soybean	cytosol	22.21	29.58
Bra036649.1-P	Field mustard	cytosol	17.37	29.41
KRH39054	Soybean	cytosol	22.05	29.38
KRH39074	Soybean	cytosol	21.9	29.18
KRH39112	Soybean	cytosol	21.75	28.97
KRH39072	Soybean	cytosol	21.6	28.83
KRH39057	Soybean	cytosol	21.45	28.57
Bra027029.1-P	Field mustard	mitochondrion	10.42	28.4
PGSC0003DMT400008759	Potato	cytosol	13.44	27.9
Bra026884.1-P	Field mustard	cytosol	19.34	27.89
CDX68679	Canola	cytosol	4.83	27.83
KRH40513	Soybean	plastid	14.65	27.64
Bra006187.1-P	Field mustard	plastid	12.08	27.49
VIT_14s0081g00120.t01	Wine grape	plastid	24.17	27.44
KRH09082	Soybean	cytosol	16.47	26.72
VIT_14s0081g00270.t01	Wine grape	plastid	23.26	26.55
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.24	26.53
KRH48615	Soybean	mitochondrion	21.6	26.24
KRH39066	Soybean	cytosol	21.9	26.13
Solyc06g007810.1.1	Tomato	cytosol	10.57	26.12
Bra026882.1-P	Field mustard	cytosol	21.0	26.03
KRH09084	Soybean	plastid	20.09	26.03
AT5G16640.1	Thale cress	mitochondrion	19.79	25.99
KRH17148	Soybean	mitochondrion	21.3	25.87
TraesCS1A01G074000.1	Wheat	mitochondrion	11.03	25.8
KRH08636	Soybean	cytosol	20.24	25.67
KRH31646	Soybean	cytosol	19.94	25.48
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	20.09	25.33
TraesCS1A01G066600.1	Wheat	mitochondrion	9.97	25.1
PGSC0003DMT400025087	Potato	endoplasmic reticulum	18.73	25.05
KRH39050	Soybean	mitochondrion	20.09	25.0
KRH08277	Soybean	plastid	21.3	24.87
KRH25652	Soybean	cytosol, golgi	20.09	24.63
AT1G64583.1	Thale cress	mitochondrion	19.03	24.61
PGSC0003DMT400025067	Potato	cytosol	17.67	24.58
AT1G62720.1	Thale cress	mitochondrion	17.98	24.54
AT1G63330.2	Thale cress	cytosol	20.69	24.51
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	9.37	24.51
KRH41817	Soybean	mitochondrion	20.54	24.5
PGSC0003DMT400008757	Potato	cytosol	18.43	24.5
AT3G16710.1	Thale cress	mitochondrion	18.73	24.46
KRH08639	Soybean	mitochondrion, plastid	20.85	24.42
VIT_14s0081g00280.t01	Wine grape	mitochondrion	23.57	24.41
KRH08671	Soybean	cytosol, mitochondrion	20.39	24.41
KRH09121	Soybean	mitochondrion	19.64	24.34
AT1G12620.1	Thale cress	cytosol, mitochondrion	22.81	24.32
AT1G64580.1	Thale cress	mitochondrion	19.18	24.28
KRH08628	Soybean	plastid	20.24	24.28
Bra021192.1-P	Field mustard	plastid	18.43	24.21
Solyc06g007300.1.1	Tomato	extracellular	21.45	23.99
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.64	23.94
KRH09154	Soybean	mitochondrion	20.09	23.92
PGSC0003DMT400025074	Potato	cytosol	19.94	23.91
KRH08607	Soybean	cytosol	20.24	23.89
Solyc06g007740.1.1	Tomato	cytosol	21.15	23.73
Bra031731.1-P	Field mustard	mitochondrion	18.13	23.62
AT1G63080.3	Thale cress	mitochondrion	21.9	23.62
KRH40400	Soybean	plastid	20.39	23.4
AT1G12300.1	Thale cress	mitochondrion	22.36	23.23
Bra036651.1-P	Field mustard	mitochondrion	18.73	23.18
KRH08625	Soybean	plastid	20.09	23.09
AT1G63400.1	Thale cress	cytosol, plastid	20.09	23.05
VIT_14s0030g02260.t01	Wine grape	cytosol	15.41	23.02
AT1G06580.1	Thale cress	mitochondrion	17.37	23.0
AT1G62910.1	Thale cress	mitochondrion	21.9	22.94
PGSC0003DMT400052971	Potato	mitochondrion	20.54	22.93
AT1G62914.1	Thale cress	mitochondrion	18.28	22.92
AT1G62670.1	Thale cress	mitochondrion	21.75	22.86
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.47	22.85
VIT_14s0030g02280.t01	Wine grape	plastid	19.34	22.82
AT3G22470.1	Thale cress	cytosol, mitochondrion	21.3	22.78
PGSC0003DMT400056665	Potato	mitochondrion	20.09	22.58
Bra026971.1-P	Field mustard	mitochondrion	21.45	22.58
PGSC0003DMT400053185	Potato	mitochondrion	20.09	22.54
AT1G63130.1	Thale cress	mitochondrion	21.45	22.54
Bra028267.1-P	Field mustard	mitochondrion	21.3	22.52
AT1G62930.1	Thale cress	plastid	21.3	22.42
AT1G62680.2	Thale cress	plastid	18.43	22.26
Bra016762.1-P	Field mustard	mitochondrion	20.39	22.24
AT1G12775.1	Thale cress	cytosol, mitochondrion	21.6	22.2
AT1G63070.1	Thale cress	mitochondrion	19.79	22.2
AT5G41170.1	Thale cress	mitochondrion	17.67	22.2
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.47	22.2
Bra027026.1-P	Field mustard	mitochondrion	17.37	21.99
PGSC0003DMT400056663	Potato	plastid	19.49	21.94
AT1G12700.2	Thale cress	cytosol	20.39	21.84
AT1G63150.1	Thale cress	mitochondrion	20.69	21.78
KRH09097	Soybean	plastid	19.03	21.61
AT1G62590.1	Thale cress	mitochondrion	20.69	21.61
Bra026957.1-P	Field mustard	mitochondrion	19.64	21.56
Bra026954.1-P	Field mustard	mitochondrion	21.15	21.54
PGSC0003DMT400008760	Potato	mitochondrion	19.03	21.5
Bra026958.1-P	Field mustard	mitochondrion	20.54	21.35
TraesCS1A01G055500.1	Wheat	mitochondrion	6.95	21.2
KRH09095	Soybean	plastid	18.58	21.03
Bra026401.1-P	Field mustard	plastid	16.92	20.93
Solyc04g080120.1.1	Tomato	extracellular	19.18	20.75
PGSC0003DMT400015293	Potato	mitochondrion	19.03	20.66
PGSC0003DMT400015298	Potato	mitochondrion	19.03	20.66
PGSC0003DMT400053556	Potato	mitochondrion	14.2	20.48
PGSC0003DMT400053182	Potato	cytosol	18.43	20.37
KRH08599	Soybean	cytosol, plastid	20.39	20.18
Bra027726.1-P	Field mustard	mitochondrion	14.05	19.75
AT1G64100.2	Thale cress	cytosol	23.26	19.11
AT4G26800.2	Thale cress	mitochondrion, plastid	14.65	18.87
KRH12873	Soybean	cytosol	19.64	18.68
KRH09085	Soybean	mitochondrion	19.64	18.47
Bra027656.1-P	Field mustard	cytosol	24.92	17.53
KRH39064	Soybean	cytosol	23.26	15.89
Bra016758.1-P	Field mustard	plastid	21.9	12.51

Protein Annotations

EnsemblPlants:TraesCS1A01G031600.1	EnsemblPlantsGene:TraesCS1A01G031600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:14577948..14579936

Molecular Weight (calculated)

73672.9 Da

IEP (calculated)

7.849

GRAVY (calculated)

0.099

Length

662 amino acids

Sequence
(BLAST)

001: MDCCCRACRT DLALAFFGRL LRTGLQAGQV VFNTLLKGLC HTKRADEALD VLLHRMPELG CTPDVVAYNT VIHGFFREGQ VGKACDMFHG MAQKGVMPNV
101: VTYNSVIDGL CKARAMDKAE TVLSQMVNDG VRPDNVTYNS LIHGYSSLGN WKEAVRVFKE MSRRFTPDVI TCTSLMAFLC KNGKSKEAAE IFDSMAMKGL
201: KRDTVSYAIL LHGYATEGCL VDMINLFNSM ATDCILPNCH IFNILINAYA KSGMMGEAML IFKKMHEQGV SPDVVTYSTV IHAFCKMGSL DIAMDKFNQM
301: VDMGVRPNAI VYHSLIQGFC THGDLVKAKE LVTEMRNKAM RPPDIKIFHS IMKNLCTEGR VIEARDILDL MVHIGMRPDV PIFNLLIGGY CLVHKMEDAT
401: KMFDDMVSYG LEPCNSTYGI LINGYCKNGR IDDGLNLFKE MLRKGLKPTT FNYNVILDGL FLAGRTVAAK EKFDEMVESG VSVCIDTYSI VLGGLCRNNC
501: TGEAITLSKK LSTMNVKFNI AIVNILIGAF FRVRRNQEAK DLFAAIPANG LVANVVTYSM MMINLIKEGS LEEADDLFLS MEKSGCTADS CMLNHIIRRL
601: LERGEIVKAG NYMSKVDAKS YSLEAKTVSL LISLFLGKGR YREHMKLLPM KYQFLEEAAT VE

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.