Factsheet for TraesCS2A01G531100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G531000.1	Wheat	golgi	85.06	71.28
TraesCS2A01G526200.1	Wheat	golgi	83.66	69.9
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	62.04	69.08
TraesCS2A01G530600.1	Wheat	cytosol	84.01	62.48
TraesCS1A01G067800.1	Wheat	cytosol	36.03	54.81
TraesCS1A01G055600.1	Wheat	cytosol	31.11	54.46
TraesCS1A01G073700.1	Wheat	cytosol	36.56	54.03
TraesCS1A01G056000.1	Wheat	cytosol	37.96	53.73
TraesCS1A01G054800.1	Wheat	cytosol	51.85	50.69
TraesCS1A01G031600.1	Wheat	cytosol	55.54	47.73
TraesCS6A01G014600.1	Wheat	cytosol	32.86	47.34
TraesCS1A01G067000.1	Wheat	mitochondrion	56.24	44.69
TraesCS1A01G057300.1	Wheat	cytosol	54.31	43.04
TraesCS6A01G083000.1	Wheat	cytosol	33.92	42.32
TraesCS1A01G054500.1	Wheat	mitochondrion	55.01	40.13
TraesCS1A01G067400.1	Wheat	mitochondrion	58.17	40.12
TraesCS1A01G067600.1	Wheat	mitochondrion	57.29	40.1
TraesCS1A01G054700.2	Wheat	mitochondrion	55.54	38.92
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	48.86	38.77
TraesCS6A01G311600.1	Wheat	mitochondrion	55.54	37.8
TraesCS1A01G073600.1	Wheat	mitochondrion	25.83	37.5
TraesCS1A01G055800.1	Wheat	mitochondrion	50.62	37.35
TraesCS1A01G031700.1	Wheat	plastid	48.33	37.11
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	23.37	35.19
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	43.76	34.87
TraesCS1A01G067700.1	Wheat	extracellular	20.04	33.83
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	24.08	27.24
Bra027636.1-P	Field mustard	cytosol	15.47	27.16
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	23.02	27.07
PGSC0003DMT400052977	Potato	cytosol	18.45	26.99
Bra027029.1-P	Field mustard	mitochondrion	11.42	26.75
Solyc06g007280.2.1	Tomato	cytosol	11.6	25.88
Solyc06g007810.1.1	Tomato	cytosol	11.95	25.37
VIT_14s0081g00110.t01	Wine grape	cytosol	21.79	25.25
KRH09082	Soybean	cytosol	18.1	25.25
PGSC0003DMT400008759	Potato	cytosol	13.71	24.45
Solyc06g005220.2.1	Tomato	cytosol	17.22	24.14
TraesCS6A01G015000.1	Wheat	mitochondrion	17.4	23.86
Bra006187.1-P	Field mustard	plastid	11.95	23.37
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.51	23.27
KRH39054	Soybean	cytosol	19.86	22.74
KRH39074	Soybean	cytosol	19.86	22.74
CDX68679	Canola	cytosol	4.57	22.61
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.04	22.57
KRH39057	Soybean	cytosol	19.68	22.54
KRH39112	Soybean	cytosol	19.68	22.54
Bra026884.1-P	Field mustard	cytosol	18.1	22.44
KRH39004	Soybean	cytosol	19.51	22.33
VIT_14s0030g02260.t01	Wine grape	cytosol	17.05	21.9
VIT_14s0081g00120.t01	Wine grape	plastid	21.97	21.44
KRH08636	Soybean	cytosol	19.51	21.26
VIT_14s0081g00270.t01	Wine grape	plastid	21.62	21.21
KRH39072	Soybean	cytosol	18.45	21.17
KRH40513	Soybean	plastid	13.01	21.08
PGSC0003DMT400025067	Potato	cytosol	17.57	21.01
Bra036649.1-P	Field mustard	cytosol	14.41	20.97
KRH08607	Soybean	cytosol	20.56	20.86
KRH08628	Soybean	plastid	20.21	20.83
PGSC0003DMT400025087	Potato	endoplasmic reticulum	18.1	20.81
KRH09084	Soybean	plastid	18.63	20.74
KRH39066	Soybean	cytosol	19.86	20.36
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.87	20.13
KRH17148	Soybean	mitochondrion	19.16	20.0
KRH08277	Soybean	plastid	19.86	19.93
KRH08671	Soybean	cytosol, mitochondrion	19.33	19.89
KRH31646	Soybean	cytosol	18.1	19.88
AT5G16640.1	Thale cress	mitochondrion	17.57	19.84
KRH25652	Soybean	cytosol, golgi	18.8	19.81
PGSC0003DMT400008757	Potato	cytosol	17.22	19.68
Bra026882.1-P	Field mustard	cytosol	18.45	19.66
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.97	19.56
KRH09121	Soybean	mitochondrion	18.28	19.48
KRH40400	Soybean	plastid	19.68	19.41
KRH08625	Soybean	plastid	19.51	19.27
PGSC0003DMT400025074	Potato	cytosol	18.63	19.2
KRH39050	Soybean	mitochondrion	17.93	19.17
KRH09154	Soybean	mitochondrion	18.63	19.06
AT1G62680.2	Thale cress	plastid	18.28	18.98
KRH08639	Soybean	mitochondrion, plastid	18.8	18.94
AT3G16710.1	Thale cress	mitochondrion	16.87	18.93
VIT_14s0030g02280.t01	Wine grape	plastid	18.63	18.89
Bra036651.1-P	Field mustard	mitochondrion	17.75	18.88
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	17.4	18.86
KRH41817	Soybean	mitochondrion	18.28	18.74
PGSC0003DMT400053185	Potato	mitochondrion	19.33	18.64
Bra027026.1-P	Field mustard	mitochondrion	16.87	18.36
KRH48615	Soybean	mitochondrion	17.57	18.35
PGSC0003DMT400056665	Potato	mitochondrion	18.98	18.34
AT1G63330.2	Thale cress	cytosol	17.93	18.25
Bra021192.1-P	Field mustard	plastid	15.99	18.06
AT1G06580.1	Thale cress	mitochondrion	15.82	18.0
AT1G62720.1	Thale cress	mitochondrion	15.29	17.94
Bra031731.1-P	Field mustard	mitochondrion	15.99	17.91
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.87	17.68
Solyc04g080120.1.1	Tomato	extracellular	18.98	17.65
Solyc06g007740.1.1	Tomato	cytosol	18.28	17.63
Solyc06g007300.1.1	Tomato	extracellular	18.28	17.57
PGSC0003DMT400015293	Potato	mitochondrion	18.8	17.54
PGSC0003DMT400015298	Potato	mitochondrion	18.8	17.54
PGSC0003DMT400052971	Potato	mitochondrion	18.28	17.54
AT1G64580.1	Thale cress	mitochondrion	15.99	17.4
AT5G41170.1	Thale cress	mitochondrion	15.99	17.27
AT1G64583.1	Thale cress	mitochondrion	15.47	17.19
PGSC0003DMT400056663	Potato	plastid	17.75	17.18
AT1G12300.1	Thale cress	mitochondrion	19.16	17.11
KRH09095	Soybean	plastid	17.57	17.09
AT1G12620.1	Thale cress	cytosol, mitochondrion	18.63	17.07
AT1G62930.1	Thale cress	plastid	18.8	17.01
Bra026971.1-P	Field mustard	mitochondrion	18.8	17.01
Bra016762.1-P	Field mustard	mitochondrion	18.1	16.97
KRH09097	Soybean	plastid	17.22	16.81
Bra026958.1-P	Field mustard	mitochondrion	18.8	16.8
AT1G63080.3	Thale cress	mitochondrion	18.1	16.78
Bra026954.1-P	Field mustard	mitochondrion	19.16	16.77
AT1G12700.2	Thale cress	cytosol	18.1	16.67
AT1G62670.1	Thale cress	mitochondrion	18.45	16.67
AT1G63130.1	Thale cress	mitochondrion	18.45	16.67
AT1G63400.1	Thale cress	cytosol, plastid	16.87	16.64
KRH08599	Soybean	cytosol, plastid	19.51	16.59
AT3G22470.1	Thale cress	cytosol, mitochondrion	17.93	16.48
AT4G26800.2	Thale cress	mitochondrion, plastid	14.76	16.34
AT1G62910.1	Thale cress	mitochondrion	18.1	16.3
Bra028267.1-P	Field mustard	mitochondrion	17.93	16.29
PGSC0003DMT400008760	Potato	mitochondrion	16.7	16.21
PGSC0003DMT400053182	Potato	cytosol	17.05	16.19
Bra026836.1-P	Field mustard	cytosol, mitochondrion	13.88	16.09
AT1G62590.1	Thale cress	mitochondrion	17.93	16.09
Bra026957.1-P	Field mustard	mitochondrion	17.05	16.09
TraesCS1A01G073800.1	Wheat	mitochondrion	9.31	15.92
PGSC0003DMT400053556	Potato	mitochondrion	12.83	15.9
AT1G63150.1	Thale cress	mitochondrion	17.57	15.9
AT1G12775.1	Thale cress	cytosol, mitochondrion	17.75	15.68
AT1G63070.1	Thale cress	mitochondrion	15.99	15.42
AT1G62914.1	Thale cress	mitochondrion	14.24	15.34
Bra026401.1-P	Field mustard	plastid	14.41	15.33
Bra027726.1-P	Field mustard	mitochondrion	12.3	14.86
KRH12873	Soybean	cytosol	18.1	14.8
KRH09085	Soybean	mitochondrion	17.4	14.06
AT1G64100.2	Thale cress	cytosol	18.45	13.03
Bra027656.1-P	Field mustard	cytosol	21.27	12.86
KRH39064	Soybean	cytosol	20.39	11.97
Bra016758.1-P	Field mustard	plastid	17.75	8.71
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	3.34	7.51
TraesCS1A01G074000.1	Wheat	mitochondrion	3.16	6.36
TraesCS1A01G055500.1	Wheat	mitochondrion	0.7	1.84
TraesCS1A01G066600.1	Wheat	mitochondrion	0.53	1.14

Protein Annotations

EnsemblPlants:TraesCS2A01G531100.1	EnsemblPlantsGene:TraesCS2A01G531100	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:748501285..748502994

Molecular Weight (calculated)

63175.4 Da

IEP (calculated)

7.936

GRAVY (calculated)

0.098

Length

569 amino acids

Sequence
(BLAST)

001: MINLGVQPDA VTYSSFINAL SKSGAMDKAE VVLRQMVDQG IVPNIITYTS LIHEYSTSGQ WKAAVRIFKE MTSTGVRPNS VTLNSFIDSL CKHRKTKEAR
101: DIFDSMAANG HKPDIFSYST LLNGYVKEGC FDDMTDLFNS MVRNGIVPNH HVFNILINAY AKRGLMDKAM HMFEVMRQQG VNPDVFSYQI VMDSLCKMGR
201: MDAALDKFNQ MVNQGVSPNK AVYQCLVLGS CSHGHFVKAK ELISEAINRG LYSNSVFFYR VINDLCKEGK VNEAQDMFDF ILGIGQRPDV IMYTSLMDGY
301: CLVGEVEKAL SVLDAMKSAG LQPDDVVYGT LLNGYCKIGR IADGLSLFRE MSLSVVKPTT IIYNIILDGL FCSGRTVCAK ENFDMMIESG IPVGVDTYNI
401: VLHGLCRNNC TDEAIELFKK LCAMNVKINV ITLNTMISAL FKTRRIEEAK DLFATISAIG LVPSVVTYSV MMTNFIKEGL LADADDMFSA MEKAGCAPNS
501: RLLNQVVRVF LKNGEVVKAV TYLAKLDAKQ LSLEASTVSL IVSLFSRKGK LRKHVKLLPV KYQPPEMLD

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.