CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027029.1-P	Field mustard	mitochondrion	80.14	96.3
CDY66358	Canola	mitochondrion	78.42	58.72
CDY09968	Canola	cytosol	47.26	46.94
CDY06217	Canola	cytosol	46.92	46.76
CDY66357	Canola	cytosol	59.25	45.65
CDY46912	Canola	mitochondrion	74.32	43.93
CDY39810	Canola	cytosol	54.11	40.41
CDY03257	Canola	cytosol	53.77	40.15
AT1G62680.2	Thale cress	plastid	71.58	38.14
CDX67634	Canola	cytosol	55.14	38.06
CDY16002	Canola	cytosol	40.07	37.62
CDY16031	Canola	cytosol	39.73	37.3
CDY26588	Canola	extracellular	38.01	34.26
CDY46394	Canola	mitochondrion	55.48	33.68
CDY48949	Canola	mitochondrion	55.14	33.47
CDY08386	Canola	cytosol	48.29	31.69
CDY34969	Canola	mitochondrion	54.79	31.62
CDY49646	Canola	mitochondrion	53.42	31.14
CDY51169	Canola	cytosol	44.86	30.97
CDX69436	Canola	plastid	52.05	30.52
CDY25492	Canola	mitochondrion	50.0	29.74
CDY31271	Canola	mitochondrion	47.26	28.4
CDY47835	Canola	mitochondrion	41.1	27.46
CDY34688	Canola	cytosol	33.56	27.07
CDY29251	Canola	mitochondrion	46.58	26.82
CDY65983	Canola	mitochondrion	38.36	26.54
CDY28348	Canola	mitochondrion, plastid	54.11	26.42
CDY26607	Canola	cytosol	41.1	26.26
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	48.97	26.05
CDY34375	Canola	mitochondrion	45.89	25.92
Solyc06g007280.2.1	Tomato	cytosol	22.6	25.88
CDY16110	Canola	extracellular	36.3	25.85
CDX89301	Canola	plastid	46.92	25.61
CDY68929	Canola	mitochondrion	51.37	24.71
CDY26593	Canola	cytosol	50.68	24.3
CDY31272	Canola	mitochondrion	46.58	23.94
CDY35831	Canola	mitochondrion	41.44	23.5
CDY33797	Canola	mitochondrion	40.75	23.24
Solyc06g005220.2.1	Tomato	cytosol	31.85	22.91
PGSC0003DMT400008759	Potato	cytosol	25.0	22.88
PGSC0003DMT400052977	Potato	cytosol	30.48	22.88
VIT_12s0028g02320.t01	Wine grape	mitochondrion	36.64	22.43
Solyc06g007810.1.1	Tomato	cytosol	20.21	22.01
CDX71969	Canola	cytosol	29.79	21.97
CDY33753	Canola	mitochondrion	33.22	21.85
CDY00489	Canola	mitochondrion	43.15	21.5
PGSC0003DMT400025087	Potato	endoplasmic reticulum	35.96	21.21
PGSC0003DMT400053556	Potato	mitochondrion	33.22	21.13
CDY26565	Canola	mitochondrion	41.1	21.09
CDY34680	Canola	cytosol	65.75	21.05
CDY16032	Canola	mitochondrion	29.11	20.83
KRH09256	Soybean	mitochondrion	38.7	20.21
PGSC0003DMT400025067	Potato	cytosol	32.53	19.96
VIT_14s0030g02260.t01	Wine grape	cytosol	30.14	19.86
KRH70370	Soybean	cytosol	36.99	19.85
VIT_14s0030g02280.t01	Wine grape	plastid	37.67	19.61
VIT_14s0081g00110.t01	Wine grape	cytosol	32.88	19.55
KRH38755	Soybean	mitochondrion	39.04	19.19
CDY25519	Canola	mitochondrion, plastid	41.78	19.09
PGSC0003DMT400025074	Potato	cytosol	35.62	18.84
KRH42744	Soybean	mitochondrion	39.38	18.82
CDY25522	Canola	mitochondrion, plastid	28.77	18.79
KRH49698	Soybean	cytosol	36.64	18.77
KRH58843	Soybean	nucleus	38.7	18.49
CDY34870	Canola	mitochondrion	18.15	18.47
VIT_14s0081g00270.t01	Wine grape	plastid	36.64	18.45
KRH75045	Soybean	mitochondrion	36.99	18.09
VIT_14s0081g00120.t01	Wine grape	plastid	35.96	18.01
PGSC0003DMT400008757	Potato	cytosol	30.48	17.87
PGSC0003DMT400015293	Potato	mitochondrion	36.99	17.7
PGSC0003DMT400015298	Potato	mitochondrion	36.99	17.7
KRH75048	Soybean	mitochondrion	36.64	17.6
Solyc06g007300.1.1	Tomato	extracellular	35.27	17.4
Solyc04g080120.1.1	Tomato	extracellular	36.3	17.32
Solyc06g007740.1.1	Tomato	cytosol	34.93	17.29
PGSC0003DMT400008760	Potato	mitochondrion	34.59	17.24
PGSC0003DMT400052971	Potato	mitochondrion	34.93	17.2
VIT_14s0081g00280.t01	Wine grape	mitochondrion	37.33	17.06
KRH75063	Soybean	mitochondrion, plastid	35.27	17.05
PGSC0003DMT400056663	Potato	plastid	33.22	16.5
PGSC0003DMT400056665	Potato	mitochondrion	33.22	16.47
PGSC0003DMT400053185	Potato	mitochondrion	32.19	15.93
CDX68680	Canola	mitochondrion	23.63	14.94
CDY34370	Canola	cytosol	41.78	14.86
PGSC0003DMT400053182	Potato	cytosol	30.48	14.86
CDY16003	Canola	cytosol, plastid	18.84	14.07
CDX81633	Canola	extracellular, golgi, plasma membrane	42.81	13.75
CDY31277	Canola	plastid	34.59	10.53
CDX68679	Canola	cytosol	3.42	8.7
CDY16033	Canola	cytosol	4.11	8.0
CDY26589	Canola	cytosol	1.03	4.35
CDY15970	Canola	cytosol	1.03	3.19
CDY21063	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY46909	EnsemblPlantsGene:GSBRNA2T00086380001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1649
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY46909	ProteinID:CDY46909.1	TIGRFAMs:TIGR00756
UniParc:UPI0004EE6027	UniProt:A0A078IC28	MapMan:35.1	:	:	:

Description

BnaA09g12850DBnaA09g12850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IC28]

Coordinates

chrLK032690:-:23656..24920

Molecular Weight (calculated)

32474.3 Da

IEP (calculated)

4.526

GRAVY (calculated)

0.013

Length

292 amino acids

Sequence
(BLAST)

001: MLGWMVRRGC SPDVVSYNTL INGFCKAKRV EDGMRLVREM EGVSVRPNVV TYTSLVKGLC NVGRWSDAAG LLSDMIKREI SPNVITYSAL VDAFVKNGKV
101: LEAKELYEEM IRMSIEPDIV TYSSLINGLC MQDRVDEASE MFGLMVRRGC FPDVVSYNTL INGFCKVKRV EDGMRLFREM SQRGLVSSTV TYNTLIQGFF
201: EAGDVDMAQE VFSQMDSPDI WTYNILLCGL CDNGEVEKAL VMFEDLQKSE MELDIVTYTT IIHGMCKSGF GLANSSTFSG DGITGTLPST PN

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.