CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67634	Canola	cytosol	87.11	99.05
Bra025516.1-P	Field mustard	cytosol, mitochondrion	97.71	98.53
CDY48949	Canola	mitochondrion	97.92	97.92
AT5G41170.1	Thale cress	mitochondrion	74.22	67.74
CDY46909	Canola	mitochondrion	33.68	55.48
CDY39810	Canola	cytosol	43.87	53.96
CDY03257	Canola	cytosol	43.87	53.96
CDY34969	Canola	mitochondrion	56.55	53.75
CDY66358	Canola	mitochondrion	42.0	51.79
CDY09968	Canola	cytosol	31.6	51.7
CDY06217	Canola	cytosol	31.39	51.54
CDY46912	Canola	mitochondrion	50.73	49.39
CDY65983	Canola	mitochondrion	43.24	49.29
CDX69436	Canola	plastid	50.94	49.2
CDY25492	Canola	mitochondrion	49.69	48.68
CDY49646	Canola	mitochondrion	50.1	48.1
CDY08386	Canola	cytosol	43.66	47.19
CDY28348	Canola	mitochondrion, plastid	56.13	45.15
CDY16031	Canola	cytosol	27.23	42.12
CDY29251	Canola	mitochondrion	44.28	42.01
CDY47835	Canola	mitochondrion	38.05	41.88
CDX89301	Canola	plastid	44.7	40.19
CDY26588	Canola	extracellular	26.82	39.81
CDY51169	Canola	cytosol	34.51	39.24
CDY33797	Canola	mitochondrion	41.37	38.87
CDY34375	Canola	mitochondrion	41.37	38.49
CDY16002	Canola	cytosol	24.74	38.26
CDY26593	Canola	cytosol	46.99	37.11
CDY31272	Canola	mitochondrion	43.66	36.97
CDY34688	Canola	cytosol	27.65	36.74
CDY16110	Canola	extracellular	30.98	36.34
CDY31271	Canola	mitochondrion	36.59	36.21
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	41.16	36.07
VIT_12s0028g02320.t01	Wine grape	mitochondrion	35.34	35.64
CDY66357	Canola	cytosol	28.07	35.62
CDY00489	Canola	mitochondrion	43.04	35.32
CDY16032	Canola	mitochondrion	29.94	35.29
CDY26565	Canola	mitochondrion	41.58	35.15
CDY68929	Canola	mitochondrion	43.66	34.6
CDY33753	Canola	mitochondrion	30.77	33.33
CDY35831	Canola	mitochondrion	35.55	33.2
CDY25522	Canola	mitochondrion, plastid	30.77	33.11
CDY26607	Canola	cytosol	31.18	32.82
CDX71969	Canola	cytosol	26.4	32.07
KRH70370	Soybean	cytosol	35.55	31.43
KRH49698	Soybean	cytosol	36.17	30.53
VIT_14s0081g00270.t01	Wine grape	plastid	36.8	30.52
PGSC0003DMT400008759	Potato	cytosol	20.17	30.41
CDY34870	Canola	mitochondrion	18.09	30.31
VIT_14s0030g02280.t01	Wine grape	plastid	35.34	30.3
KRH42744	Soybean	mitochondrion	38.46	30.28
KRH58843	Soybean	nucleus	38.25	30.11
KRH09256	Soybean	mitochondrion	34.93	30.05
PGSC0003DMT400052977	Potato	cytosol	24.12	29.82
CDY25519	Canola	mitochondrion, plastid	39.29	29.58
VIT_14s0081g00110.t01	Wine grape	cytosol	30.15	29.53
VIT_14s0081g00120.t01	Wine grape	plastid	35.55	29.33
Solyc06g007280.2.1	Tomato	cytosol	15.38	29.02
Solyc06g005220.2.1	Tomato	cytosol	24.32	28.82
KRH75045	Soybean	mitochondrion	35.76	28.81
KRH75063	Soybean	mitochondrion, plastid	36.17	28.81
KRH38755	Soybean	mitochondrion	35.34	28.62
PGSC0003DMT400008757	Potato	cytosol	29.52	28.51
Solyc06g007810.1.1	Tomato	cytosol	15.8	28.36
PGSC0003DMT400008760	Potato	mitochondrion	34.3	28.16
CDY16003	Canola	cytosol, plastid	22.87	28.13
CDY16033	Canola	cytosol	8.73	28.0
PGSC0003DMT400025087	Potato	endoplasmic reticulum	28.69	27.88
KRH75048	Soybean	mitochondrion	34.93	27.63
VIT_14s0081g00280.t01	Wine grape	mitochondrion	36.59	27.54
PGSC0003DMT400052971	Potato	mitochondrion	33.47	27.15
PGSC0003DMT400025074	Potato	cytosol	30.98	26.99
Solyc06g007300.1.1	Tomato	extracellular	33.06	26.86
PGSC0003DMT400025067	Potato	cytosol	26.4	26.68
PGSC0003DMT400056665	Potato	mitochondrion	32.43	26.49
PGSC0003DMT400053556	Potato	mitochondrion	25.16	26.36
Solyc06g007740.1.1	Tomato	cytosol	32.02	26.1
VIT_14s0030g02260.t01	Wine grape	cytosol	23.91	25.96
PGSC0003DMT400015298	Potato	mitochondrion	32.64	25.74
PGSC0003DMT400015293	Potato	mitochondrion	32.64	25.74
PGSC0003DMT400056663	Potato	plastid	31.39	25.68
Solyc04g080120.1.1	Tomato	extracellular	32.43	25.49
PGSC0003DMT400053185	Potato	mitochondrion	31.18	25.42
CDX68679	Canola	cytosol	6.03	25.22
CDX68680	Canola	mitochondrion	23.91	24.89
PGSC0003DMT400053182	Potato	cytosol	30.35	24.37
CDY34370	Canola	cytosol	39.29	23.02
CDX81633	Canola	extracellular, golgi, plasma membrane	42.0	22.22
CDY34680	Canola	cytosol	37.21	19.63
CDY31277	Canola	plastid	35.76	17.94
CDY26589	Canola	cytosol	1.04	7.25
CDY15970	Canola	cytosol	0.83	4.26
CDY21063	Canola	plastid	2.7	2.37

Protein Annotations

EnsemblPlants:CDY46394	EnsemblPlantsGene:GSBRNA2T00083936001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1649
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY46394	ProteinID:CDY46394.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EEFD17	UniProt:A0A078IAR2	MapMan:35.1	:	:

Description

BnaC04g33130DBnaC04g33130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IAR2]

Coordinates

chrLK032665:+:59464..60909

Molecular Weight (calculated)

54113.3 Da

IEP (calculated)

8.569

GRAVY (calculated)

0.023

Length

481 amino acids

Sequence
(BLAST)

001: MATRLLHLHR HRLEKGDSGT TLSFNRLLSL SLWFRAFCDY RAILRNSLPF NEALDLFTRM VESRPLPSTV DFTKLLTAIS KSKRYDVVIA LCNHLETLGI
101: PHDLYTCNLV MNCFSRSSQP HLASSFLGKM MKLGFSPDIV TFTSLVNGNR PEDAMYIVNQ MGIEPDVVMY TTLIESLCRN GLVDNAMSLF NQMESNGVKA
201: DAVTYTSLVN GLCNSGRLSD AVSLLNDMMR RRINPDVVTF NALIDGFVKK GKLLEARELY SEMIRVSVAP DVFTHTSLIN GLCMEGRVDE AKEMFYSMED
301: KGCFPDVVAY TSLINGFCKS RKVEYGMKLF YEMTQRGLLG NTVTYTALIQ GFCQVGRHKA AQEFFSQMVS RGVSPNIRTY NVLLHGLCLN GKLGKALLIF
401: EDIQKREIDV NIITYTIIIQ GMCKAGKLRD AVDLFCSLPS KGMKPNVVTY STMISGLFRE GFKLEAHVLF RKMKEDGVIQ N

Best Arabidopsis Sequence Match ( AT5G41170.1 )
(BLAST)

001: MAMRFFQLHR NRLVKGNSGK ALSFSRLLDL SFWVRAFCNY REILRNGLHS LQFNEALDLF THMVESRPLP SIIDFTKLLN VIAKMKKFDV VINLCDHLQI
101: MGVSHDLYTC NLLMNCFCQS SQPYLASSFL GKMMKLGFEP DIVTFTSLIN GFCLGNRMEE AMSMVNQMVE MGIKPDVVMY TTIIDSLCKN GHVNYALSLF
201: DQMENYGIRP DVVMYTSLVN GLCNSGRWRD ADSLLRGMTK RKIKPDVITF NALIDAFVKE GKFLDAEELY NEMIRMSIAP NIFTYTSLIN GFCMEGCVDE
301: ARQMFYLMET KGCFPDVVAY TSLINGFCKC KKVDDAMKIF YEMSQKGLTG NTITYTTLIQ GFGQVGKPNV AQEVFSHMVS RGVPPNIRTY NVLLHCLCYN
401: GKVKKALMIF EDMQKREMDG VAPNIWTYNV LLHGLCYNGK LEKALMVFED MRKREMDIGI ITYTIIIQGM CKAGKVKNAV NLFCSLPSKG VKPNVVTYTT
501: MISGLFREGL KHEAHVLFRK MKEDGVS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g41170, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLL3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.