Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16033 | Canola | cytosol | 31.82 | 84.0 |
| CDY26589 | Canola | cytosol | 13.89 | 79.71 |
| CDY26607 | Canola | cytosol | 72.47 | 62.8 |
| Bra026884.1-P | Field mustard | cytosol | 70.96 | 61.22 |
| CDY51169 | Canola | cytosol | 64.14 | 60.05 |
| CDY26588 | Canola | extracellular | 47.98 | 58.64 |
| CDY16110 | Canola | extracellular | 60.35 | 58.29 |
| CDY16031 | Canola | cytosol | 41.41 | 52.73 |
| CDY15970 | Canola | cytosol | 12.37 | 52.13 |
| CDY35831 | Canola | mitochondrion | 66.16 | 50.87 |
| CDY16002 | Canola | cytosol | 38.38 | 48.87 |
| CDX68679 | Canola | cytosol | 13.89 | 47.83 |
| CDY34870 | Canola | mitochondrion | 33.33 | 45.99 |
| CDY26593 | Canola | cytosol | 70.71 | 45.98 |
| CDY00489 | Canola | mitochondrion | 66.67 | 45.05 |
| Bra026836.1-P | Field mustard | cytosol, mitochondrion | 55.05 | 44.4 |
| CDY68929 | Canola | mitochondrion | 66.67 | 43.49 |
| CDY33797 | Canola | mitochondrion | 55.81 | 43.16 |
| AT1G12620.1 | Thale cress | cytosol, mitochondrion | 67.17 | 42.83 |
| AT3G22470.1 | Thale cress | cytosol, mitochondrion | 66.92 | 42.81 |
| CDY31272 | Canola | mitochondrion | 60.35 | 42.08 |
| AT1G12300.1 | Thale cress | mitochondrion | 67.42 | 41.92 |
| CDY16026 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole | 57.83 | 41.71 |
| CDY26565 | Canola | mitochondrion | 59.34 | 41.3 |
| CDY33753 | Canola | mitochondrion | 45.71 | 40.77 |
| AT1G12775.1 | Thale cress | cytosol, mitochondrion | 65.91 | 40.53 |
| CDY16032 | Canola | mitochondrion | 40.91 | 39.71 |
| CDY34688 | Canola | cytosol | 35.61 | 38.95 |
| CDY34375 | Canola | mitochondrion | 50.76 | 38.88 |
| CDY09968 | Canola | cytosol | 27.27 | 36.73 |
| CDY06217 | Canola | cytosol | 27.02 | 36.52 |
| CDY16003 | Canola | cytosol, plastid | 34.6 | 35.04 |
| CDY31271 | Canola | mitochondrion | 42.93 | 34.98 |
| CDY39810 | Canola | cytosol | 33.84 | 34.27 |
| CDY03257 | Canola | cytosol | 33.84 | 34.27 |
| Solyc06g007810.1.1 | Tomato | cytosol | 21.97 | 32.46 |
| CDY25522 | Canola | mitochondrion, plastid | 36.62 | 32.44 |
| VIT_14s0081g00110.t01 | Wine grape | cytosol | 38.38 | 30.96 |
| PGSC0003DMT400052977 | Potato | cytosol | 30.3 | 30.85 |
| Solyc06g005220.2.1 | Tomato | cytosol | 31.31 | 30.54 |
| CDX67634 | Canola | cytosol | 32.07 | 30.02 |
| VIT_14s0081g00270.t01 | Wine grape | plastid | 43.94 | 30.0 |
| CDY46909 | Canola | mitochondrion | 21.97 | 29.79 |
| VIT_12s0028g02320.t01 | Wine grape | mitochondrion | 35.35 | 29.35 |
| CDY08386 | Canola | cytosol | 32.32 | 28.76 |
| CDY46912 | Canola | mitochondrion | 35.86 | 28.74 |
| PGSC0003DMT400008759 | Potato | cytosol | 22.98 | 28.53 |
| CDX81633 | Canola | extracellular, golgi, plasma membrane | 65.15 | 28.38 |
| KRH70370 | Soybean | cytosol | 38.64 | 28.12 |
| VIT_14s0081g00120.t01 | Wine grape | plastid | 41.16 | 27.96 |
| PGSC0003DMT400025087 | Potato | endoplasmic reticulum | 34.6 | 27.68 |
| CDX69436 | Canola | plastid | 34.6 | 27.51 |
| PGSC0003DMT400008757 | Potato | cytosol | 34.6 | 27.51 |
| CDY34969 | Canola | mitochondrion | 34.34 | 26.88 |
| KRH49698 | Soybean | cytosol | 38.64 | 26.84 |
| CDY65983 | Canola | mitochondrion | 28.54 | 26.78 |
| CDY49646 | Canola | mitochondrion | 33.84 | 26.75 |
| CDY25492 | Canola | mitochondrion | 33.08 | 26.68 |
| CDY46394 | Canola | mitochondrion | 32.07 | 26.4 |
| CDY48949 | Canola | mitochondrion | 31.82 | 26.2 |
| CDY25519 | Canola | mitochondrion, plastid | 42.17 | 26.13 |
| KRH75045 | Soybean | mitochondrion | 39.39 | 26.13 |
| PGSC0003DMT400025074 | Potato | cytosol | 36.11 | 25.91 |
| CDY66357 | Canola | cytosol | 24.75 | 25.86 |
| PGSC0003DMT400025067 | Potato | cytosol | 31.06 | 25.84 |
| KRH75063 | Soybean | mitochondrion, plastid | 39.39 | 25.83 |
| KRH75048 | Soybean | mitochondrion | 39.14 | 25.49 |
| PGSC0003DMT400008760 | Potato | mitochondrion | 37.37 | 25.26 |
| Solyc06g007300.1.1 | Tomato | extracellular | 37.37 | 25.0 |
| KRH38755 | Soybean | mitochondrion | 36.87 | 24.58 |
| KRH42744 | Soybean | mitochondrion | 37.88 | 24.55 |
| PGSC0003DMT400052971 | Potato | mitochondrion | 36.62 | 24.45 |
| VIT_14s0081g00280.t01 | Wine grape | mitochondrion | 39.39 | 24.41 |
| KRH09256 | Soybean | mitochondrion | 34.34 | 24.33 |
| PGSC0003DMT400056665 | Potato | mitochondrion | 35.86 | 24.11 |
| KRH58843 | Soybean | nucleus | 37.12 | 24.06 |
| VIT_14s0030g02260.t01 | Wine grape | cytosol | 26.77 | 23.93 |
| Solyc06g007280.2.1 | Tomato | cytosol | 15.4 | 23.92 |
| Solyc06g007740.1.1 | Tomato | cytosol | 35.35 | 23.73 |
| CDY29251 | Canola | mitochondrion | 30.3 | 23.67 |
| PGSC0003DMT400056663 | Potato | plastid | 35.1 | 23.64 |
| VIT_14s0030g02280.t01 | Wine grape | plastid | 33.33 | 23.53 |
| CDY28348 | Canola | mitochondrion, plastid | 35.35 | 23.41 |
| PGSC0003DMT400053185 | Potato | mitochondrion | 34.09 | 22.88 |
| CDX89301 | Canola | plastid | 30.81 | 22.8 |
| PGSC0003DMT400053182 | Potato | cytosol | 33.33 | 22.04 |
| CDY47835 | Canola | mitochondrion | 24.24 | 21.97 |
| CDX68680 | Canola | mitochondrion | 25.51 | 21.86 |
| CDY31277 | Canola | plastid | 52.02 | 21.48 |
| PGSC0003DMT400015298 | Potato | mitochondrion | 33.08 | 21.48 |
| PGSC0003DMT400015293 | Potato | mitochondrion | 33.08 | 21.48 |
| CDY66358 | Canola | mitochondrion | 20.96 | 21.28 |
| Solyc04g080120.1.1 | Tomato | extracellular | 32.58 | 21.08 |
| CDY34370 | Canola | cytosol | 42.42 | 20.46 |
| PGSC0003DMT400053556 | Potato | mitochondrion | 21.97 | 18.95 |
| CDY34680 | Canola | cytosol | 32.83 | 14.25 |
| CDY21063 | Canola | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX71969 | EnsemblPlantsGene:GSBRNA2T00155733001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PFAM:PF12854 | PFAM:PF13041 |
| PFscan:PS51375 | ProteinID:CDX71969 | ProteinID:CDX71969.1 | TIGRFAMs:TIGR00756 | UniParc:UPI0004EE49B3 | MapMan:35.1 |
Description
BnaC08g29050D
Coordinates
chrLK031795:-:1556018..1557435
Molecular Weight (calculated)
43558.8 Da
IEP (calculated)
4.645
GRAVY (calculated)
-0.053
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKMLKLGYE PGTVTFSTLI NGLCLEGRVS EAVEVSEAMA LIDRMMENGC QPDLFTYGPI LNRMCKSGNI ASALDLIRKM EHRKVKLNAA IYNIIIDSLC
101: KDGSLDEMAT KGIKADVFTY NSLIGGFCSA GRWDDGAQLL RDMITSEITP NIVTFSRLDE ANQMMELMVT KGCDPNIVTF NILINGYSLS SKGFVNLGNL
201: MWPRNKELFQ EMVSEGVHPS IMTYGILLDG LCDNGELEEA LGIIYKMHKT KIDPGICIYN IIIHGMCNAS KVDDAWDLFC SLNFKGAKPD VKTYNIMIGG
301: LCRKGSLSEA DALFRKMEED GIAPDDCTYN TLARARLRGS DKSNSVELIE EMKSNGFSAD ASTVKLVMDM LSSGELDKSF LDMLSGPSRE ISSSLD
101: KDGSLDEMAT KGIKADVFTY NSLIGGFCSA GRWDDGAQLL RDMITSEITP NIVTFSRLDE ANQMMELMVT KGCDPNIVTF NILINGYSLS SKGFVNLGNL
201: MWPRNKELFQ EMVSEGVHPS IMTYGILLDG LCDNGELEEA LGIIYKMHKT KIDPGICIYN IIIHGMCNAS KVDDAWDLFC SLNFKGAKPD VKTYNIMIGG
301: LCRKGSLSEA DALFRKMEED GIAPDDCTYN TLARARLRGS DKSNSVELIE EMKSNGFSAD ASTVKLVMDM LSSGELDKSF LDMLSGPSRE ISSSLD
001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.