CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47835	Canola	mitochondrion	76.18	77.57
AT1G64580.1	Thale cress	mitochondrion	72.13	61.38
CDY06217	Canola	cytosol	37.75	57.34
CDY09968	Canola	cytosol	37.53	56.8
CDY39810	Canola	cytosol	46.29	52.69
CDY03257	Canola	cytosol	46.07	52.43
CDY25492	Canola	mitochondrion	54.83	49.69
CDX67634	Canola	cytosol	46.97	49.41
CDY46909	Canola	mitochondrion	31.69	48.29
CDX69436	Canola	plastid	53.93	48.19
CDY49646	Canola	mitochondrion	53.26	47.31
CDY65983	Canola	mitochondrion	44.72	47.16
CDY48949	Canola	mitochondrion	47.19	43.66
CDY46394	Canola	mitochondrion	47.19	43.66
CDY46912	Canola	mitochondrion	48.31	43.52
CDY66358	Canola	mitochondrion	37.98	43.33
CDY34969	Canola	mitochondrion	49.21	43.28
CDY51169	Canola	cytosol	36.63	38.53
CDY16031	Canola	cytosol	26.29	37.62
CDY28348	Canola	mitochondrion, plastid	50.34	37.46
CDY34375	Canola	mitochondrion	42.7	36.75
CDY16002	Canola	cytosol	25.62	36.66
CDY31271	Canola	mitochondrion	40.0	36.63
CDY29251	Canola	mitochondrion	41.35	36.29
CDY33797	Canola	mitochondrion	41.12	35.74
CDY16110	Canola	extracellular	32.81	35.61
CDY68929	Canola	mitochondrion	48.09	35.26
CDY66357	Canola	cytosol	29.89	35.09
CDY26607	Canola	cytosol	35.96	35.01
CDY26588	Canola	extracellular	25.39	34.88
CDY34688	Canola	cytosol	28.31	34.81
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	42.92	34.79
CDX89301	Canola	plastid	41.57	34.58
CDY31272	Canola	mitochondrion	44.04	34.51
VIT_12s0028g02320.t01	Wine grape	mitochondrion	36.85	34.38
CDY26593	Canola	cytosol	46.74	34.15
CDY33753	Canola	mitochondrion	33.93	34.01
CDY26565	Canola	mitochondrion	42.92	33.57
CDY00489	Canola	mitochondrion	43.82	33.28
CDY16033	Canola	cytosol	11.01	32.67
CDX71969	Canola	cytosol	28.76	32.32
CDX68679	Canola	cytosol	8.31	32.17
CDY25522	Canola	mitochondrion, plastid	31.91	31.77
CDY16032	Canola	mitochondrion	27.64	30.15
VIT_14s0081g00270.t01	Wine grape	plastid	38.88	29.83
PGSC0003DMT400052977	Potato	cytosol	25.84	29.56
KRH09256	Soybean	mitochondrion	36.85	29.34
CDY35831	Canola	mitochondrion	33.93	29.32
VIT_14s0081g00110.t01	Wine grape	cytosol	32.13	29.12
PGSC0003DMT400008757	Potato	cytosol	32.36	28.92
CDY25519	Canola	mitochondrion, plastid	41.12	28.64
PGSC0003DMT400008759	Potato	cytosol	20.45	28.53
KRH70370	Soybean	cytosol	34.61	28.31
VIT_14s0081g00120.t01	Wine grape	plastid	37.08	28.3
Solyc06g007280.2.1	Tomato	cytosol	16.18	28.24
Solyc06g005220.2.1	Tomato	cytosol	25.39	27.83
KRH49698	Soybean	cytosol	35.51	27.72
KRH38755	Soybean	mitochondrion	36.63	27.44
Solyc06g007810.1.1	Tomato	cytosol	16.4	27.24
PGSC0003DMT400025087	Potato	endoplasmic reticulum	30.11	27.07
KRH58843	Soybean	nucleus	37.08	27.0
KRH42744	Soybean	mitochondrion	36.85	26.84
VIT_14s0030g02280.t01	Wine grape	plastid	33.26	26.38
KRH75048	Soybean	mitochondrion	35.51	25.99
VIT_14s0081g00280.t01	Wine grape	mitochondrion	37.3	25.98
KRH75045	Soybean	mitochondrion	34.83	25.96
PGSC0003DMT400025067	Potato	cytosol	27.64	25.84
PGSC0003DMT400025074	Potato	cytosol	31.69	25.54
KRH75063	Soybean	mitochondrion, plastid	34.61	25.5
CDY34870	Canola	mitochondrion	16.4	25.44
Solyc06g007740.1.1	Tomato	cytosol	33.71	25.42
Solyc06g007300.1.1	Tomato	extracellular	33.71	25.34
PGSC0003DMT400008760	Potato	mitochondrion	33.26	25.26
PGSC0003DMT400052971	Potato	mitochondrion	33.48	25.13
PGSC0003DMT400053185	Potato	mitochondrion	33.26	25.08
PGSC0003DMT400056665	Potato	mitochondrion	32.58	24.62
PGSC0003DMT400056663	Potato	plastid	32.36	24.49
CDY16003	Canola	cytosol, plastid	21.35	24.3
CDX68680	Canola	mitochondrion	25.17	24.24
VIT_14s0030g02260.t01	Wine grape	cytosol	24.04	24.15
PGSC0003DMT400053556	Potato	mitochondrion	24.49	23.75
PGSC0003DMT400053182	Potato	cytosol	31.69	23.54
CDY34370	Canola	cytosol	40.45	21.92
PGSC0003DMT400015298	Potato	mitochondrion	28.99	21.15
PGSC0003DMT400015293	Potato	mitochondrion	28.99	21.15
CDX81633	Canola	extracellular, golgi, plasma membrane	43.15	21.12
Solyc04g080120.1.1	Tomato	extracellular	28.54	20.75
CDY26589	Canola	cytosol	3.15	20.29
CDY34680	Canola	cytosol	40.67	19.85
CDY31277	Canola	plastid	35.28	16.37
CDY15970	Canola	cytosol	3.15	14.89
CDY21063	Canola	plastid	1.12	0.91

Protein Annotations

EnsemblPlants:CDY08386	EnsemblPlantsGene:GSBRNA2T00000121001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF3
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:CDY08386
ProteinID:CDY08386.1	TIGRFAMs:TIGR00756	UniParc:UPI0004EEBDD2	UniProt:A0A078F4N7	MapMan:35.1	:

Description

BnaC09g12100DBnaC09g12100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4N7]

Coordinates

chrLK031985:-:807596..808933

Molecular Weight (calculated)

50077.2 Da

IEP (calculated)

9.081

GRAVY (calculated)

0.009

Length

445 amino acids

Sequence
(BLAST)

001: MVHSRPLPTI LDFTRVLTAI PKMNKHHDAV VYLCRKMEAL GISHDLYTCT ILIHCLCRCS RLSLAKMTKL GIEPSVVTLG SLLNGFCRGN RFREALSLVD
101: AMGCEPNFVV YNTVINGLCK NGEADKALEV LRLMEKKGIR GDSVTYNTLC SSGRWSEAAR LVRDMIKRRK LDPNVIFYSG MIHVFVKEGN LFDAVNLYKE
201: MIRRSVDPNV FTYNSLINGL CIDGRLGEAK RMFDSMRCSP DLVTYNTLIK GFCKSKRVED GMKLLCHMSR EGIIGDVFTY NTLIHGYCQA GKLSVALKVF
301: GRMVDCGVAP DVVTYNVLLG CLCSKGKVEK AMVMVEDMEK REGMYVDIVT YSIIIRGMCR SGKVREAWCL FCSLALKGVK PDAIAYRTMI AGLSRKGRRR
401: EADKLCRKMK EDGIIMPIKC IHNDETLRDH HASSSLAEFI KVIHE

Best Arabidopsis Sequence Match ( AT1G64580.1 )
(BLAST)

001: MQRLIPIAFS SSVKGFVRRH YLLLERGNNP ETSLSRSFSG ASHHHHYRER LRNELHCIKF DDAFSLFCEM LQSRPIPSIV DFTRVLTVIA KMNKFDIVIY
101: LYHKMENLGI SHDLYSFTIL IHCFCRCSRL SLALALLGKM MKLGFRPSIV TLGSLLNGFC QGNRFQEAVS LVDSMDGFGF VPNVVIYNTV INGLCKNRDL
201: NNALEVFYCM EKKGIRADAV TYNTLISGLS NSGRWTDAAR LLRDMVKRKI DPNVIFFTAL IDTFVKEGNL LEARNLYKEM IRRSVVPNVF TYNSLINGFC
301: IHGCLGDAKY MFDLMVSKGC FPDVVTYNTL ITGFCKSKRV EDGMKLFCEM TYQGLVGDAF TYNTLIHGYC QAGKLNVAQK VFNRMVDCGV SPDIVTYNIL
401: LDCLCNNGKI EKALVMVEDL QKSEMDVDII TYNIIIQGLC RTDKLKEAWC LFRSLTRKGV KPDAIAYITM ISGLCRKGLQ READKLCRRM KEDGFMPSER
501: IYDETLRDHY TSLSAELIKA AHE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g64580 [Source:UniProtKB/Swiss-Prot;Acc:Q0WKZ3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.