CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25492	Canola	mitochondrion	93.6	80.45
Bra027636.1-P	Field mustard	cytosol	59.24	77.16
CDY03257	Canola	cytosol	43.36	46.8
CDY39810	Canola	cytosol	43.13	46.55
CDX67634	Canola	cytosol	46.21	46.1
CDY08386	Canola	cytosol	47.16	44.72
CDY09968	Canola	cytosol	30.57	43.88
CDX69436	Canola	plastid	51.66	43.78
CDY46394	Canola	mitochondrion	49.29	43.24
CDY49646	Canola	mitochondrion	51.18	43.11
CDY48949	Canola	mitochondrion	49.05	43.04
CDY06217	Canola	cytosol	29.86	43.0
CDY46912	Canola	mitochondrion	49.29	42.11
CDY34969	Canola	mitochondrion	49.53	41.3
CDY47835	Canola	mitochondrion	41.94	40.5
CDY66358	Canola	mitochondrion	36.49	39.49
CDY46909	Canola	mitochondrion	26.54	38.36
CDY28348	Canola	mitochondrion, plastid	50.24	35.45
CDY31272	Canola	mitochondrion	47.16	35.04
CDY34375	Canola	mitochondrion	42.89	35.01
CDY29251	Canola	mitochondrion	41.94	34.91
CDY16032	Canola	mitochondrion	33.65	34.8
CDY34870	Canola	mitochondrion	22.75	33.45
CDY33797	Canola	mitochondrion	40.52	33.4
CDX89301	Canola	plastid	42.18	33.27
VIT_12s0028g02320.t01	Wine grape	mitochondrion	37.44	33.12
CDY25522	Canola	mitochondrion, plastid	35.07	33.11
CDY31271	Canola	mitochondrion	37.91	32.92
CDY68929	Canola	mitochondrion	46.45	32.29
CDY34688	Canola	cytosol	26.78	31.22
CDY26565	Canola	mitochondrion	41.94	31.11
CDY00489	Canola	mitochondrion	42.65	30.72
CDY51169	Canola	cytosol	30.57	30.5
CDY16033	Canola	cytosol	10.66	30.0
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	38.39	29.51
CDY16003	Canola	cytosol, plastid	27.25	29.41
CDY26593	Canola	cytosol	42.18	29.23
Solyc06g007280.2.1	Tomato	cytosol	17.3	28.63
VIT_14s0081g00270.t01	Wine grape	plastid	39.34	28.62
CDY16110	Canola	extracellular	27.73	28.54
CDX71969	Canola	cytosol	26.78	28.54
CDY26588	Canola	extracellular	21.8	28.4
CDY26607	Canola	cytosol	30.33	28.01
CDY25519	Canola	mitochondrion, plastid	42.18	27.86
CDY16031	Canola	cytosol	20.38	27.65
CDY35831	Canola	mitochondrion	33.65	27.57
KRH70370	Soybean	cytosol	35.31	27.39
VIT_14s0081g00120.t01	Wine grape	plastid	37.68	27.27
KRH09256	Soybean	mitochondrion	36.02	27.19
CDY66357	Canola	cytosol	24.41	27.18
KRH49698	Soybean	cytosol	36.49	27.02
CDX68679	Canola	cytosol	7.35	26.96
CDY16002	Canola	cytosol	19.67	26.69
CDY33753	Canola	mitochondrion	27.96	26.58
VIT_14s0081g00110.t01	Wine grape	cytosol	30.81	26.48
PGSC0003DMT400025074	Potato	cytosol	34.6	26.45
PGSC0003DMT400052977	Potato	cytosol	23.93	25.96
KRH75045	Soybean	mitochondrion	36.73	25.96
KRH38755	Soybean	mitochondrion	36.02	25.59
KRH58843	Soybean	nucleus	36.73	25.37
Solyc06g007300.1.1	Tomato	extracellular	35.55	25.34
KRH75063	Soybean	mitochondrion, plastid	36.26	25.33
KRH75048	Soybean	mitochondrion	36.49	25.33
VIT_14s0030g02280.t01	Wine grape	plastid	33.65	25.31
Solyc06g007740.1.1	Tomato	cytosol	35.07	25.08
KRH42744	Soybean	mitochondrion	36.26	25.04
Solyc06g005220.2.1	Tomato	cytosol	23.93	24.88
PGSC0003DMT400008760	Potato	mitochondrion	34.36	24.74
VIT_14s0081g00280.t01	Wine grape	mitochondrion	37.44	24.73
PGSC0003DMT400008757	Potato	cytosol	29.15	24.7
PGSC0003DMT400056665	Potato	mitochondrion	34.36	24.62
PGSC0003DMT400008759	Potato	cytosol	18.48	24.45
PGSC0003DMT400053556	Potato	mitochondrion	26.54	24.4
PGSC0003DMT400053185	Potato	mitochondrion	33.41	23.9
PGSC0003DMT400052971	Potato	mitochondrion	33.41	23.78
PGSC0003DMT400056663	Potato	plastid	32.94	23.64
PGSC0003DMT400025087	Potato	endoplasmic reticulum	26.78	22.83
CDY34370	Canola	cytosol	43.6	22.41
PGSC0003DMT400015298	Potato	mitochondrion	31.99	22.13
PGSC0003DMT400015293	Potato	mitochondrion	31.99	22.13
Solyc04g080120.1.1	Tomato	extracellular	31.75	21.9
PGSC0003DMT400053182	Potato	cytosol	31.04	21.87
PGSC0003DMT400025067	Potato	cytosol	24.64	21.85
CDX68680	Canola	mitochondrion	22.99	21.0
Solyc06g007810.1.1	Tomato	cytosol	13.27	20.9
VIT_14s0030g02260.t01	Wine grape	cytosol	20.85	19.86
CDX81633	Canola	extracellular, golgi, plasma membrane	42.42	19.69
CDY31277	Canola	plastid	36.26	15.95
CDY34680	Canola	cytosol	32.46	15.02
CDY26589	Canola	cytosol	1.18	7.25
CDY15970	Canola	cytosol	1.18	5.32
CDY21063	Canola	plastid	2.84	2.19

Protein Annotations

EnsemblPlants:CDY65983	EnsemblPlantsGene:GSBRNA2T00051121001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1649
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:CDY65983	ProteinID:CDY65983.1
TIGRFAMs:TIGR00756	UniParc:UPI0004EDB458	UniProt:A0A078JEE3	MapMan:35.1	:	:

Description

BnaCnng49250DBnaCnng49250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JEE3]

Coordinates

chrLK035030:+:15834..17309

Molecular Weight (calculated)

47537.5 Da

IEP (calculated)

9.304

GRAVY (calculated)

-0.010

Length

422 amino acids

Sequence
(BLAST)

001: MMIRSLSTAI VSTAKRFVHQ SGSCCWGRRA LSCPTADYRD TLRNELHHLK LDDAIGLFNV MARSRPLPST FDFSRVLTAI ARMKKFDVVI SLCQEMERLA
101: IPHNIYTCNI LINSFTRCSQ SHLSLALSFL AKMVKLGYAP DIVTLSSLLN GFKGVSGAMS FVNRIEGMGY KPNVVMYNTL IDAYCKGGRV SDALQVFDVM
201: KRKGVAPSVV TYNAVIRGLC KSGRWKEADG LLSDMVEKRI DPNVVTFSVL IDACVKEGNV LEAKELYKEM ISSKGCVPNV VTYNTLIKGF CKSKRAHDGM
301: KLFCEMNHKG VRGDAFTYNT LIHGYCRVGK FKKALTIFRD MEKNEMEFDI YTYNIIIHGM YKAGKVEDAM ELFCSLNVKG LKPDVVTYRT MISGLCRKGL
401: RHEADVLFRQ MTEDEFLLLY NS

Best Arabidopsis Sequence Match ( AT1G63400.1 )
(BLAST)

001: MRISISSVVS STTSRFVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS GDYREILRNG LHSMKLDDAI GLFGGMVKSR PLPSIFEFNK LLSAIAKMKK
101: FDLVISLGEK MQRLGISHNL YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL
201: FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD IDLAFNLLNK MEAAKIEANV VIYSTVIDSL CKYRHEDDAL NLFTEMENKG VRPNVITYSS
301: LISCLCNYER WSDASRLLSD MIERKINPNV VTFNALIDAF VKEGKLVEAE KLYDEMIKRS IDPDIFTYSS LINGFCMHDR LDEAKHMFEL MISKDCFPNV
401: VTYNTLINGF CKAKRIDEGV ELFREMSQRG LVGNTVTYTT LIHGFFQARD CDNAQMVFKQ MVSDGVHPNI MTYNTLLDGL CKNGKLEKAM VVFEYLQRSK
501: MEPTIYTYNI MIEGMCKAGK VEDGWDLFCS LSLKGVKPDV IIYNTMISGF CRKGLKEEAD ALFRKMREDG PLPDSGT

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g63400 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH26]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.