CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026954.1-P	Field mustard	mitochondrion	91.46	85.69
CDY26607	Canola	cytosol	61.41	81.84
CDY26588	Canola	extracellular	42.53	79.94
CDY16031	Canola	cytosol	38.59	75.56
CDY16110	Canola	extracellular	50.57	75.12
CDY16002	Canola	cytosol	37.6	73.63
CDY51169	Canola	cytosol	49.92	71.87
CDX71969	Canola	cytosol	45.98	70.71
CDY26565	Canola	mitochondrion	62.73	67.14
CDY33753	Canola	mitochondrion	48.93	67.12
CDY00489	Canola	mitochondrion	64.53	67.06
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	59.44	65.94
CDY33797	Canola	mitochondrion	55.34	65.82
CDY16033	Canola	cytosol	16.09	65.33
CDY68929	Canola	mitochondrion	65.02	65.24
CDY31272	Canola	mitochondrion	60.26	64.61
CDY31271	Canola	mitochondrion	50.9	63.79
AT3G22470.1	Thale cress	cytosol, mitochondrion	64.53	63.49
CDY34870	Canola	mitochondrion	29.89	63.41
CDY16032	Canola	mitochondrion	41.71	62.25
AT1G12620.1	Thale cress	cytosol, mitochondrion	63.38	62.16
CDY35831	Canola	mitochondrion	52.05	61.55
AT1G12300.1	Thale cress	mitochondrion	62.89	60.13
CDY16003	Canola	cytosol, plastid	38.59	60.1
AT1G12775.1	Thale cress	cytosol, mitochondrion	63.05	59.63
CDX67634	Canola	cytosol	35.63	51.3
CDY46909	Canola	mitochondrion	24.3	50.68
CDY03257	Canola	cytosol	32.35	50.38
CDY39810	Canola	cytosol	32.35	50.38
CDY09968	Canola	cytosol	24.14	50.0
CDY06217	Canola	cytosol	23.97	49.83
CDY34688	Canola	cytosol	29.23	49.17
CDY34375	Canola	mitochondrion	41.22	48.55
CDY26589	Canola	cytosol	5.42	47.83
CDY46394	Canola	mitochondrion	37.11	46.99
CDY08386	Canola	cytosol	34.15	46.74
CDX69436	Canola	plastid	38.1	46.59
CDY48949	Canola	mitochondrion	36.78	46.57
VIT_12s0028g02320.t01	Wine grape	mitochondrion	35.96	45.91
CDY49646	Canola	mitochondrion	37.44	45.51
CDY46912	Canola	mitochondrion	36.62	45.14
CDY66358	Canola	mitochondrion	28.74	44.87
CDY25492	Canola	mitochondrion	35.8	44.4
CDX68679	Canola	cytosol	8.37	44.35
CDY34969	Canola	mitochondrion	36.29	43.68
CDX81633	Canola	extracellular, golgi, plasma membrane	64.2	43.01
CDY47835	Canola	mitochondrion	30.54	42.56
CDY65983	Canola	mitochondrion	29.23	42.18
CDY25522	Canola	mitochondrion, plastid	30.87	42.06
VIT_14s0081g00270.t01	Wine grape	plastid	39.41	41.38
CDY25519	Canola	mitochondrion, plastid	41.87	39.91
CDY29251	Canola	mitochondrion	32.51	39.05
VIT_14s0081g00110.t01	Wine grape	cytosol	31.2	38.7
Solyc06g007280.2.1	Tomato	cytosol	16.09	38.43
VIT_14s0081g00120.t01	Wine grape	plastid	36.78	38.42
CDY15970	Canola	cytosol	5.91	38.3
CDY28348	Canola	mitochondrion, plastid	37.6	38.29
PGSC0003DMT400008757	Potato	cytosol	31.2	38.15
KRH70370	Soybean	cytosol	33.99	38.05
PGSC0003DMT400052977	Potato	cytosol	23.97	37.53
CDX89301	Canola	plastid	32.68	37.2
Solyc06g005220.2.1	Tomato	cytosol	24.79	37.19
KRH75045	Soybean	mitochondrion	36.12	36.85
KRH75063	Soybean	mitochondrion, plastid	36.45	36.76
VIT_14s0030g02280.t01	Wine grape	plastid	33.83	36.72
KRH49698	Soybean	cytosol	34.32	36.67
CDY66357	Canola	cytosol	22.66	36.41
CDX68680	Canola	mitochondrion	27.59	36.36
PGSC0003DMT400025074	Potato	cytosol	32.68	36.05
KRH42744	Soybean	mitochondrion	36.12	36.01
KRH75048	Soybean	mitochondrion	35.8	35.86
Solyc06g007810.1.1	Tomato	cytosol	15.76	35.82
PGSC0003DMT400025087	Potato	endoplasmic reticulum	29.06	35.76
PGSC0003DMT400008759	Potato	cytosol	18.72	35.74
PGSC0003DMT400008760	Potato	mitochondrion	34.32	35.67
Solyc06g007300.1.1	Tomato	extracellular	34.65	35.64
KRH58843	Soybean	nucleus	35.63	35.52
KRH09256	Soybean	mitochondrion	32.18	35.06
VIT_14s0081g00280.t01	Wine grape	mitochondrion	36.78	35.05
KRH38755	Soybean	mitochondrion	34.15	35.02
PGSC0003DMT400056663	Potato	plastid	33.5	34.69
PGSC0003DMT400056665	Potato	mitochondrion	33.5	34.63
PGSC0003DMT400052971	Potato	mitochondrion	33.66	34.57
PGSC0003DMT400025067	Potato	cytosol	26.6	34.03
Solyc06g007740.1.1	Tomato	cytosol	32.84	33.9
PGSC0003DMT400053185	Potato	mitochondrion	32.18	33.22
PGSC0003DMT400053556	Potato	mitochondrion	24.14	32.03
PGSC0003DMT400053182	Potato	cytosol	30.87	31.39
VIT_14s0030g02260.t01	Wine grape	cytosol	22.82	31.38
CDY34370	Canola	cytosol	41.38	30.69
PGSC0003DMT400015298	Potato	mitochondrion	30.54	30.49
PGSC0003DMT400015293	Potato	mitochondrion	30.54	30.49
Solyc04g080120.1.1	Tomato	extracellular	30.05	29.9
CDY31277	Canola	plastid	46.14	29.3
CDY34680	Canola	cytosol	29.23	19.52
CDY21063	Canola	plastid	2.63	2.91

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078GPP2	EnsemblPlants:CDY26593	ProteinID:CDY26593	ProteinID:CDY26593.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00035463001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR44149	PANTHER:PTHR44149:SF3
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EDB6A2	SEG:seg

Description

BnaA09g46840DBnaA09g46840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GPP2]

Coordinates

chrLK032192:+:263707..265723

Molecular Weight (calculated)

68073.1 Da

IEP (calculated)

5.462

GRAVY (calculated)

0.021

Length

609 amino acids

Sequence
(BLAST)

001: MSASYKERLR SGIIGIKKDE AVALFQSMIR SRPLPTIIDF NRLFTAMAKT KQYDLVLDLC KQMELNGVAH NMYTLNIMIN CFCRRWKLGF AFSVMGKILK
101: LGYEPDRVTF NTLLNGLCLE GRVFDAVELV DCMVLSQHVP DLITLNTLVN GLCLKDRVSE AVDLIARMMD KGCQADQFTY GPILNRMCKF GNTTLALDLL
201: TKMEDRKVKP HVVTYNIVID SLCKDGSLDD ALSFFSEMET KGIKADVFTY TSLIGGFCSV DGSLDDALSF FSEMETKGIK ADVFTYTSLI GGFCSVGKWD
301: DGAQLLRDMI RREITPNAIT FSSLIDSFVK VGKLSEAQDL YNEMIKRGTD PDTITYNSLI YGLCMEKRLD EAREMLDLMV SKGCDPDIVT YSILINGYCK
401: AKLVDEGMRL FRKMTLRGVV ANTVTYSTLI QGFCQSGKLN VAKELFQEMV SEGVHPSIMT YGILLDGLCD NGELEEALGI LEKMHKCKID PGIGIYTIII
501: HGMCNANKID DAWDLFCSLS LKGVKRDIRS YNIMLSGLCK RSSLSEADAL FRKMKEDGYE PDDCTYNTLI RAHLRGSDIT TSVQLIEEMK RCGFSSDAST
601: VKIIASSLD

Best Arabidopsis Sequence Match ( AT3G22470.1 )
(BLAST)

001: MIQRLIPLNR KASNFTQILE KGTSLLHYSS ITEAKLSYKE RLRNGIVDIK VNDAIDLFES MIQSRPLPTP IDFNRLCSAV ARTKQYDLVL GFCKGMELNG
101: IEHDMYTMTI MINCYCRKKK LLFAFSVLGR AWKLGYEPDT ITFSTLVNGF CLEGRVSEAV ALVDRMVEMK QRPDLVTVST LINGLCLKGR VSEALVLIDR
201: MVEYGFQPDE VTYGPVLNRL CKSGNSALAL DLFRKMEERN IKASVVQYSI VIDSLCKDGS FDDALSLFNE MEMKGIKADV VTYSSLIGGL CNDGKWDDGA
301: KMLREMIGRN IIPDVVTFSA LIDVFVKEGK LLEAKELYNE MITRGIAPDT ITYNSLIDGF CKENCLHEAN QMFDLMVSKG CEPDIVTYSI LINSYCKAKR
401: VDDGMRLFRE ISSKGLIPNT ITYNTLVLGF CQSGKLNAAK ELFQEMVSRG VPPSVVTYGI LLDGLCDNGE LNKALEIFEK MQKSRMTLGI GIYNIIIHGM
501: CNASKVDDAW SLFCSLSDKG VKPDVVTYNV MIGGLCKKGS LSEADMLFRK MKEDGCTPDD FTYNILIRAH LGGSGLISSV ELIEEMKVCG FSADSSTIKM
601: VIDMLSDRRL DKSFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g22470, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ83]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.