CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036649.1-P	Field mustard	cytosol	97.44	97.44
CDY03257	Canola	cytosol	95.14	95.14
AT1G62720.1	Thale cress	mitochondrion	73.4	59.18
CDY46909	Canola	mitochondrion	40.41	54.11
CDY09968	Canola	cytosol	39.9	53.06
CDY06217	Canola	cytosol	39.39	52.56
CDX67634	Canola	cytosol	53.71	49.65
CDY08386	Canola	cytosol	52.69	46.29
CDY25492	Canola	mitochondrion	56.52	45.01
CDY34969	Canola	mitochondrion	57.03	44.07
CDY46394	Canola	mitochondrion	53.96	43.87
CDY48949	Canola	mitochondrion	53.45	43.45
CDX69436	Canola	plastid	54.99	43.17
CDY65983	Canola	mitochondrion	46.55	43.13
CDY49646	Canola	mitochondrion	54.99	42.91
CDY66358	Canola	mitochondrion	42.46	42.56
CDY46912	Canola	mitochondrion	53.45	42.31
CDY51169	Canola	cytosol	42.2	39.01
CDY16031	Canola	cytosol	30.43	38.26
CDY16002	Canola	cytosol	30.18	37.94
CDY47835	Canola	mitochondrion	41.94	37.53
CDY26588	Canola	extracellular	30.95	37.35
CDY34688	Canola	cytosol	34.53	37.29
CDY28348	Canola	mitochondrion, plastid	56.52	36.96
CDY34375	Canola	mitochondrion	46.55	35.2
CDY29251	Canola	mitochondrion	45.27	34.91
CDY26607	Canola	cytosol	40.66	34.79
CDY16110	Canola	extracellular	36.32	34.63
CDY66357	Canola	cytosol	33.25	34.3
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	47.57	33.88
CDX71969	Canola	cytosol	34.27	33.84
CDX89301	Canola	plastid	45.52	33.27
CDY33797	Canola	mitochondrion	43.48	33.2
CDY31271	Canola	mitochondrion	40.92	32.92
CDY31272	Canola	mitochondrion	47.31	32.57
VIT_12s0028g02320.t01	Wine grape	mitochondrion	39.64	32.49
CDY26593	Canola	cytosol	50.38	32.35
CDY26565	Canola	mitochondrion	47.06	32.34
CDY00489	Canola	mitochondrion	48.08	32.08
CDY68929	Canola	mitochondrion	49.36	31.8
CDY25522	Canola	mitochondrion, plastid	36.32	31.77
CDY35831	Canola	mitochondrion	41.43	31.46
PGSC0003DMT400008759	Potato	cytosol	25.58	31.35
CDY33753	Canola	mitochondrion	35.55	31.31
Solyc06g005220.2.1	Tomato	cytosol	32.48	31.28
CDY16032	Canola	mitochondrion	31.2	29.9
Solyc06g007280.2.1	Tomato	cytosol	19.44	29.8
PGSC0003DMT400052977	Potato	cytosol	29.41	29.56
VIT_14s0081g00110.t01	Wine grape	cytosol	37.08	29.53
Solyc06g007810.1.1	Tomato	cytosol	20.2	29.48
PGSC0003DMT400025087	Potato	endoplasmic reticulum	36.32	28.69
KRH70370	Soybean	cytosol	39.13	28.12
KRH09256	Soybean	mitochondrion	40.15	28.09
KRH49698	Soybean	cytosol	40.66	27.89
KRH38755	Soybean	mitochondrion	42.2	27.78
VIT_14s0081g00270.t01	Wine grape	plastid	41.18	27.76
PGSC0003DMT400008757	Potato	cytosol	35.04	27.51
VIT_14s0081g00120.t01	Wine grape	plastid	40.66	27.27
PGSC0003DMT400025067	Potato	cytosol	32.99	27.1
CDY16033	Canola	cytosol	10.23	26.67
PGSC0003DMT400025074	Potato	cytosol	37.6	26.63
CDY25519	Canola	mitochondrion, plastid	43.22	26.45
KRH42744	Soybean	mitochondrion	40.41	25.86
CDY34870	Canola	mitochondrion	18.93	25.78
KRH58843	Soybean	nucleus	40.15	25.7
Solyc06g007300.1.1	Tomato	extracellular	38.36	25.34
VIT_14s0030g02280.t01	Wine grape	plastid	36.32	25.31
PGSC0003DMT400056665	Potato	mitochondrion	38.11	25.3
PGSC0003DMT400053556	Potato	mitochondrion	29.16	24.84
PGSC0003DMT400008760	Potato	mitochondrion	37.08	24.74
KRH75063	Soybean	mitochondrion, plastid	37.85	24.5
PGSC0003DMT400056663	Potato	plastid	36.83	24.49
KRH75045	Soybean	mitochondrion	37.34	24.46
CDX68679	Canola	cytosol	7.16	24.35
Solyc06g007740.1.1	Tomato	cytosol	36.57	24.24
CDY16003	Canola	cytosol, plastid	24.04	24.04
KRH75048	Soybean	mitochondrion	37.34	24.01
PGSC0003DMT400052971	Potato	mitochondrion	36.32	23.95
VIT_14s0081g00280.t01	Wine grape	mitochondrion	39.13	23.94
PGSC0003DMT400015298	Potato	mitochondrion	36.06	23.11
PGSC0003DMT400015293	Potato	mitochondrion	36.06	23.11
PGSC0003DMT400053185	Potato	mitochondrion	34.53	22.88
VIT_14s0030g02260.t01	Wine grape	cytosol	25.58	22.57
Solyc04g080120.1.1	Tomato	extracellular	35.29	22.55
CDX68680	Canola	mitochondrion	26.09	22.08
PGSC0003DMT400053182	Potato	cytosol	31.97	20.87
CDY34370	Canola	cytosol	42.46	20.22
CDX81633	Canola	extracellular, golgi, plasma membrane	46.55	20.02
CDY34680	Canola	cytosol	44.25	18.97
CDY31277	Canola	plastid	39.13	15.95
CDY26589	Canola	cytosol	1.02	5.8
CDY15970	Canola	cytosol	1.02	4.26
CDY21063	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY39810	EnsemblPlantsGene:GSBRNA2T00068622001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1649
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY39810	ProteinID:CDY39810.1	TIGRFAMs:TIGR00756
UniParc:UPI0004EE6E81	UniProt:A0A078HMQ0	MapMan:35.1	:	:	:

Description

BnaA09g10620DBnaA09g10620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMQ0]

Coordinates

chrLK032457:+:271044..272219

Molecular Weight (calculated)

44281.1 Da

IEP (calculated)

5.146

GRAVY (calculated)

0.061

Length

391 amino acids

Sequence
(BLAST)

001: METLGITHDL YTYNIVINCL CRCSRFSIAL SVIGKMVKLG FHPDVVTLSS LINGFCQRNR VFDAIELVAK METMGCKPDV VIYNTIIDGF CKNRLVNNAL
101: ELFEQMDKNG VRADVVTYNS LITGLCSSGR CNDADLLLRD MVMRNVVPNV ITFTALIDAS AKEGNLLEAE KLHEEMVNRS VVPDVFAYNS MINGLCMHGR
201: VDEAKQMLEV MVTNECLPDI VTYNTLINGF CKFKRVDDVM KLFSEMSERG LVRDTVTYNT IIQGYFQVGK PDTAQGVFRR MDSPPNLRTY SILLYGLFNN
301: GKVEKALVVF QDMQKSGMDL DVTIYNIMIH IMCKAGYVED AWDLFCSLTD NGVEPDVVSY TTMISGFCRK RLWREADELY RKMHEDGLLL L

Best Arabidopsis Sequence Match ( AT1G62720.1 )
(BLAST)

001: MRRSTTISIA SKANKFLNLC LLQKGNPVIV PFISRFWGRT FSTKRSSMNL EEEIDLFCKM IQSRPLPSIV DFSKVLSKIA KSKNYDLVIS LFHHMEVCGI
101: GHDLYSYNIV INCLCRCSRF VIALSVVGKM MKFGYEPDVV TVSSLINGFC QGNRVFDAID LVSKMEEMGF RPDVVIYNTI IDGSCKIGLV NDAVELFDRM
201: ERDGVRADAV TYNSLVAGLC CSGRWSDAAR LMRDMVMRDI VPNVITFTAV IDVFVKEGKF SEAMKLYEEM TRRCVDPDVF TYNSLINGLC MHGRVDEAKQ
301: MLDLMVTKGC LPDVVTYNTL INGFCKSKRV DEGTKLFREM AQRGLVGDTI TYNTIIQGYF QAGRPDAAQE IFSRMDSRPN IRTYSILLYG LCMNWRVEKA
401: LVLFENMQKS EIELDITTYN IVIHGMCKIG NVEDAWDLFR SLSCKGLKPD VVSYTTMISG FCRKRQWDKS DLLYRKMQED GLLPL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62720 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI78]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.