CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021192.1-P	Field mustard	plastid	95.65	96.03
CDY28348	Canola	mitochondrion, plastid	91.5	77.42
AT3G16710.1	Thale cress	mitochondrion	70.16	70.02
CDX67634	Canola	cytosol	48.81	58.39
CDY39810	Canola	cytosol	44.07	57.03
CDY46394	Canola	mitochondrion	53.75	56.55
CDY03257	Canola	cytosol	43.68	56.52
CDY48949	Canola	mitochondrion	53.56	56.34
CDY46909	Canola	mitochondrion	31.62	54.79
CDY09968	Canola	cytosol	30.83	53.06
CDY06217	Canola	cytosol	30.24	52.22
CDX69436	Canola	plastid	50.99	51.81
CDY49646	Canola	mitochondrion	49.41	49.9
CDY65983	Canola	mitochondrion	41.3	49.53
CDY25492	Canola	mitochondrion	47.83	49.29
CDY08386	Canola	cytosol	43.28	49.21
CDY66358	Canola	mitochondrion	37.35	48.46
CDY46912	Canola	mitochondrion	46.84	47.98
CDY47835	Canola	mitochondrion	37.75	43.71
CDY34375	Canola	mitochondrion	41.3	40.43
CDY29251	Canola	mitochondrion	39.92	39.84
CDY16031	Canola	cytosol	24.31	39.55
CDY51169	Canola	cytosol	32.81	39.24
CDY31271	Canola	mitochondrion	37.35	38.89
CDY31272	Canola	mitochondrion	43.28	38.56
CDY33797	Canola	mitochondrion	38.54	38.09
CDX89301	Canola	plastid	40.12	37.94
CDY16002	Canola	cytosol	23.12	37.62
CDY34688	Canola	cytosol	26.88	37.57
VIT_12s0028g02320.t01	Wine grape	mitochondrion	35.38	37.53
CDY68929	Canola	mitochondrion	44.66	37.23
CDY26588	Canola	extracellular	23.72	37.04
CDY00489	Canola	mitochondrion	42.89	37.03
CDY25522	Canola	mitochondrion, plastid	32.41	36.69
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	39.72	36.61
CDY26593	Canola	cytosol	43.68	36.29
CDY16110	Canola	extracellular	28.66	35.37
CDY34870	Canola	mitochondrion	19.96	35.19
CDY66357	Canola	cytosol	26.09	34.83
CDY16032	Canola	mitochondrion	28.06	34.8
CDY26565	Canola	mitochondrion	39.13	34.8
CDY35831	Canola	mitochondrion	35.38	34.76
CDY26607	Canola	cytosol	31.03	34.35
CDX71969	Canola	cytosol	26.88	34.34
VIT_14s0081g00270.t01	Wine grape	plastid	37.55	32.76
CDY33753	Canola	mitochondrion	28.46	32.43
PGSC0003DMT400008759	Potato	cytosol	20.36	32.29
Solyc06g005220.2.1	Tomato	cytosol	25.89	32.27
KRH70370	Soybean	cytosol	34.39	31.99
VIT_14s0030g02280.t01	Wine grape	plastid	34.98	31.55
PGSC0003DMT400008760	Potato	mitochondrion	36.36	31.4
Solyc06g007280.2.1	Tomato	cytosol	15.81	31.37
PGSC0003DMT400025074	Potato	cytosol	34.19	31.34
PGSC0003DMT400008757	Potato	cytosol	30.83	31.33
KRH49698	Soybean	cytosol	34.78	30.88
VIT_14s0081g00120.t01	Wine grape	plastid	35.57	30.87
KRH09256	Soybean	mitochondrion	33.99	30.77
CDY16033	Canola	cytosol	9.09	30.67
KRH38755	Soybean	mitochondrion	35.97	30.64
KRH58843	Soybean	nucleus	36.96	30.61
PGSC0003DMT400025087	Potato	endoplasmic reticulum	29.64	30.3
KRH42744	Soybean	mitochondrion	36.56	30.28
VIT_14s0081g00280.t01	Wine grape	mitochondrion	38.14	30.2
KRH75045	Soybean	mitochondrion	35.57	30.15
CDY25519	Canola	mitochondrion, plastid	37.94	30.05
PGSC0003DMT400053556	Potato	mitochondrion	27.08	29.85
KRH75063	Soybean	mitochondrion, plastid	35.38	29.64
PGSC0003DMT400052977	Potato	cytosol	22.73	29.56
PGSC0003DMT400056665	Potato	mitochondrion	34.39	29.54
KRH75048	Soybean	mitochondrion	35.38	29.44
VIT_14s0081g00110.t01	Wine grape	cytosol	28.46	29.33
PGSC0003DMT400025067	Potato	cytosol	27.08	28.78
Solyc06g007810.1.1	Tomato	cytosol	15.22	28.73
Solyc06g007300.1.1	Tomato	extracellular	33.2	28.38
PGSC0003DMT400056663	Potato	plastid	32.81	28.23
PGSC0003DMT400052971	Potato	mitochondrion	33.0	28.16
PGSC0003DMT400053185	Potato	mitochondrion	32.81	28.14
Solyc06g007740.1.1	Tomato	cytosol	32.81	28.14
CDY16003	Canola	cytosol, plastid	21.15	27.37
PGSC0003DMT400053182	Potato	cytosol	32.21	27.21
PGSC0003DMT400015298	Potato	mitochondrion	32.61	27.05
PGSC0003DMT400015293	Potato	mitochondrion	32.61	27.05
CDX68679	Canola	cytosol	6.13	26.96
Solyc04g080120.1.1	Tomato	extracellular	32.21	26.63
CDX68680	Canola	mitochondrion	23.91	26.19
VIT_14s0030g02260.t01	Wine grape	cytosol	22.92	26.19
CDY34370	Canola	cytosol	38.74	23.87
CDX81633	Canola	extracellular, golgi, plasma membrane	40.12	22.33
CDY34680	Canola	cytosol	34.39	19.08
CDY31277	Canola	plastid	34.59	18.25
CDY26589	Canola	cytosol	0.99	7.25
CDY15970	Canola	cytosol	0.79	4.26
CDY21063	Canola	plastid	2.17	2.0

Protein Annotations

EnsemblPlants:CDY34969	EnsemblPlantsGene:GSBRNA2T00057554001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF1
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY34969	ProteinID:CDY34969.1	SEG:seg
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0004EEB651	UniProt:A0A078HBZ5	MapMan:35.1	:

Description

BnaA01g27650DBnaA01g27650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBZ5]

Coordinates

chrLK032344:+:81653..83173

Molecular Weight (calculated)

57360.1 Da

IEP (calculated)

8.354

GRAVY (calculated)

0.032

Length

506 amino acids

Sequence
(BLAST)

001: MRSSIATWSA SIAKRFLLIL HRHRLHIEAA PSSRLCGSRA FSNHRDTPRS DLHNLHLDEA LELFTRMSHS RPLPSLGDFT RLLTAIAAME DEEERYDVVV
101: SLFDQMRRIG VSPLLYTCNI VINSLSQSSR PYYTAFAFLG KMLKLGFEPD VFTFTSLISG LCYRNRVDDA VALFVKMVEI GCSRPNVVTY TTLIHCLCKN
201: RHVDHAVELF NQMERDGVRA NVVTYNSLVK CLCGCGRWGH AALLLRDMME RRIRPNVITF SALIDAFAKA GKVLDAVELF DVMREMSIEP NVFTYNSLIN
301: GFCKHGRLEE AMSMFNLMER KGCVPDIVTY TTLIHGFCKS KRVEDSVRVF NEMSLKGLAA NTVTYTVFIQ GYCLVGKPDV AQEVFNQMGF SHNAPPDIRT
401: YNVLLDGLCC NGKVEKALMI FEYMRKREMD VSIVTYTIVI QGMCKVGKVE DAFDLFCSLF SKGVKPNVVT YTTMITGFCR RGLIHEADAL FRKMKQDGFL
501: PNERVS

Best Arabidopsis Sequence Match ( AT3G16710.1 )
(BLAST)

001: MRRSIATGFA SIVKGFHLHS HRHRLQISNP RTAASLSLCG FCFWIRAFSS YRKILRNGLH NLQFNDALDL FTRMVHSRPL PSIIDFTRLL SVIAKMNRYD
101: VVISLFEQMQ ILGIPPLLCT CNIVMHCVCL SSQPCRASCF LGKMMKLGFE PDLVTFTSLL NGYCHWNRIE DAIALFDQIL GMGFKPNVVT YTTLIRCLCK
201: NRHLNHAVEL FNQMGTNGSR PNVVTYNALV TGLCEIGRWG DAAWLLRDMM KRRIEPNVIT FTALIDAFVK VGKLMEAKEL YNVMIQMSVY PDVFTYGSLI
301: NGLCMYGLLD EARQMFYLME RNGCYPNEVI YTTLIHGFCK SKRVEDGMKI FYEMSQKGVV ANTITYTVLI QGYCLVGRPD VAQEVFNQMS SRRAPPDIRT
401: YNVLLDGLCC NGKVEKALMI FEYMRKREMD INIVTYTIII QGMCKLGKVE DAFDLFCSLF SKGMKPNVIT YTTMISGFCR RGLIHEADSL FKKMKEDGFL
501: PNESVYK

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LUR2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.