Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31277 | Canola | plastid | 98.36 | 56.31 |
| Bra016758.1-P | Field mustard | plastid | 98.91 | 46.85 |
| CDY34870 | Canola | mitochondrion | 4.74 | 9.06 |
| CDY16032 | Canola | mitochondrion | 5.28 | 7.11 |
| CDY16003 | Canola | cytosol, plastid | 4.74 | 6.65 |
| CDY31272 | Canola | mitochondrion | 6.19 | 5.99 |
| CDY31271 | Canola | mitochondrion | 5.1 | 5.76 |
| CDY33753 | Canola | mitochondrion | 4.37 | 5.41 |
| AT1G12300.1 | Thale cress | mitochondrion | 5.83 | 5.02 |
| AT1G12775.1 | Thale cress | cytosol, mitochondrion | 5.46 | 4.66 |
| CDY68929 | Canola | mitochondrion | 5.1 | 4.61 |
| AT1G12620.1 | Thale cress | cytosol, mitochondrion | 4.92 | 4.35 |
| CDX81633 | Canola | extracellular, golgi, plasma membrane | 7.1 | 4.29 |
| CDY00489 | Canola | mitochondrion | 4.55 | 4.27 |
| CDY33797 | Canola | mitochondrion | 3.83 | 4.1 |
| CDY35831 | Canola | mitochondrion | 3.64 | 3.88 |
| CDY26565 | Canola | mitochondrion | 4.01 | 3.87 |
| AT3G22470.1 | Thale cress | cytosol, mitochondrion | 4.19 | 3.72 |
| CDY25522 | Canola | mitochondrion, plastid | 2.91 | 3.58 |
| CDY47835 | Canola | mitochondrion | 2.55 | 3.2 |
| CDX69436 | Canola | plastid | 2.73 | 3.01 |
| CDY29251 | Canola | mitochondrion | 2.73 | 2.96 |
| CDY65983 | Canola | mitochondrion | 2.19 | 2.84 |
| CDY25519 | Canola | mitochondrion, plastid | 3.28 | 2.82 |
| CDX89301 | Canola | plastid | 2.73 | 2.8 |
| CDY49646 | Canola | mitochondrion | 2.55 | 2.79 |
| CDY46394 | Canola | mitochondrion | 2.37 | 2.7 |
| CDY34370 | Canola | cytosol | 4.01 | 2.68 |
| CDY26593 | Canola | cytosol | 2.91 | 2.63 |
| CDY66358 | Canola | mitochondrion | 1.82 | 2.56 |
| CDY34375 | Canola | mitochondrion | 2.37 | 2.51 |
| CDY48949 | Canola | mitochondrion | 2.19 | 2.49 |
| CDY25492 | Canola | mitochondrion | 2.19 | 2.44 |
| PGSC0003DMT400053556 | Potato | mitochondrion | 2.0 | 2.4 |
| PGSC0003DMT400056663 | Potato | plastid | 2.55 | 2.38 |
| KRH58843 | Soybean | nucleus | 2.55 | 2.29 |
| PGSC0003DMT400008760 | Potato | mitochondrion | 2.37 | 2.22 |
| PGSC0003DMT400056665 | Potato | mitochondrion | 2.37 | 2.21 |
| CDY34969 | Canola | mitochondrion | 2.0 | 2.17 |
| PGSC0003DMT400053182 | Potato | cytosol | 2.37 | 2.17 |
| CDX68680 | Canola | mitochondrion | 1.82 | 2.16 |
| KRH42744 | Soybean | mitochondrion | 2.37 | 2.13 |
| PGSC0003DMT400052971 | Potato | mitochondrion | 2.19 | 2.02 |
| CDY28348 | Canola | mitochondrion, plastid | 2.19 | 2.01 |
| PGSC0003DMT400053185 | Potato | mitochondrion | 2.0 | 1.86 |
| Solyc06g007300.1.1 | Tomato | extracellular | 2.0 | 1.86 |
| KRH75048 | Soybean | mitochondrion | 2.0 | 1.81 |
| Solyc04g080120.1.1 | Tomato | extracellular | 2.0 | 1.8 |
| Solyc06g007740.1.1 | Tomato | cytosol | 1.82 | 1.69 |
| KRH75063 | Soybean | mitochondrion, plastid | 1.82 | 1.66 |
| Solyc06g007280.2.1 | Tomato | cytosol | 0.73 | 1.57 |
| KRH75045 | Soybean | mitochondrion | 1.64 | 1.51 |
| PGSC0003DMT400015293 | Potato | mitochondrion | 1.64 | 1.48 |
| PGSC0003DMT400015298 | Potato | mitochondrion | 1.64 | 1.48 |
| CDY46912 | Canola | mitochondrion | 1.28 | 1.42 |
| VIT_14s0081g00270.t01 | Wine grape | plastid | 1.46 | 1.38 |
| KRH09256 | Soybean | mitochondrion | 1.28 | 1.25 |
| VIT_14s0081g00280.t01 | Wine grape | mitochondrion | 1.46 | 1.25 |
| CDX67634 | Canola | cytosol | 0.91 | 1.18 |
| KRH38755 | Soybean | mitochondrion | 1.28 | 1.18 |
| CDY08386 | Canola | cytosol | 0.91 | 1.12 |
| CDY16026 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole | 1.09 | 1.09 |
| VIT_14s0030g02280.t01 | Wine grape | plastid | 1.09 | 1.07 |
| PGSC0003DMT400008757 | Potato | cytosol | 0.91 | 1.0 |
| PGSC0003DMT400025074 | Potato | cytosol | 0.91 | 0.91 |
| VIT_14s0081g00120.t01 | Wine grape | plastid | 0.73 | 0.69 |
| VIT_12s0028g02320.t01 | Wine grape | mitochondrion | 0.55 | 0.63 |
| KRH70370 | Soybean | cytosol | 0.55 | 0.55 |
| KRH49698 | Soybean | cytosol | 0.55 | 0.53 |
| CDY16002 | Canola | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400052977 | Potato | cytosol | 0.0 | 0.0 |
| CDY16031 | Canola | cytosol | 0.0 | 0.0 |
| Solyc06g005220.2.1 | Tomato | cytosol | 0.0 | 0.0 |
| CDY16033 | Canola | cytosol | 0.0 | 0.0 |
| CDY26607 | Canola | cytosol | 0.0 | 0.0 |
| CDY26589 | Canola | cytosol | 0.0 | 0.0 |
| Solyc06g007810.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| VIT_14s0030g02260.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| VIT_14s0081g00110.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| CDY26588 | Canola | extracellular | 0.0 | 0.0 |
| CDY16110 | Canola | extracellular | 0.0 | 0.0 |
| CDY15970 | Canola | cytosol | 0.0 | 0.0 |
| CDY09968 | Canola | cytosol | 0.0 | 0.0 |
| CDY34680 | Canola | cytosol | 0.0 | 0.0 |
| CDY34688 | Canola | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400025087 | Potato | endoplasmic reticulum | 0.0 | 0.0 |
| PGSC0003DMT400025067 | Potato | cytosol | 0.0 | 0.0 |
| CDY06217 | Canola | cytosol | 0.0 | 0.0 |
| CDY39810 | Canola | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400008759 | Potato | cytosol | 0.0 | 0.0 |
| CDY03257 | Canola | cytosol | 0.0 | 0.0 |
| CDY46909 | Canola | mitochondrion | 0.0 | 0.0 |
| CDX71969 | Canola | cytosol | 0.0 | 0.0 |
| CDY51169 | Canola | cytosol | 0.0 | 0.0 |
| CDX68679 | Canola | cytosol | 0.0 | 0.0 |
| CDY66357 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078G8P8 | UniProt:A0A078G8P8 | EnsemblPlants:CDY21063 | ProteinID:CDY21063 |
| ProteinID:CDY21063.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00015233001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF537 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI0004EEBDA0 | SEG:seg | : | : | : |
Description
BnaA08g24620DBnaA08g24620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8P8]
Coordinates
chrLK032115:+:526615..528804
Molecular Weight (calculated)
60332.1 Da
IEP (calculated)
9.780
GRAVY (calculated)
-0.221
Length
549 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSSVSTRF LVLLQDFSAF RKISWRSAAT NYHRQSRLLC HVAKEDGSLT LASLELGNNS PRRSGKSKAM KLEGGFVSEM SQGKVRAATN YKVKVVKEKK
101: PAEIVSPLFS AKSFEELGLP DSLLDSLERE GFSVPTDVQS AAVPAIIKGH DAVIQSYTGS GKTLAYLLPI LSEIGPLSGK AKSSEKRAEI QAMIVAPSRE
201: LGMQIVREVE KLLGPDHRRM VQQLVGGANR MRQEEALKKN KPAIVVGTPG RIAEISKSGR LHTHGCRFLV LDEVDELLSF NFREDIHRII EHVGRRAGAG
301: PKGEVDERAN RQTILVSATV PFSVIRAAKS WSHEPVLVQA NKVTPLDTVQ PTAPAISLTP TTSEANGQIQ TTIQSLPPAL KHYYCISKHQ HKVDALRRCV
401: HALDAQSVIA FMNHSKQLKD VVYKLEARGM SCAELHGDLG KLGRSTVLKK FKNGEVRVLV TNELSARGLD VAECDLVVNL ELPTDAVHYA HRAGRTGRLG
501: RKGTVVTVCE ESQVFIVKKM EKQLGLPFEY CEFVDGELVV TEEDKAIIR
101: PAEIVSPLFS AKSFEELGLP DSLLDSLERE GFSVPTDVQS AAVPAIIKGH DAVIQSYTGS GKTLAYLLPI LSEIGPLSGK AKSSEKRAEI QAMIVAPSRE
201: LGMQIVREVE KLLGPDHRRM VQQLVGGANR MRQEEALKKN KPAIVVGTPG RIAEISKSGR LHTHGCRFLV LDEVDELLSF NFREDIHRII EHVGRRAGAG
301: PKGEVDERAN RQTILVSATV PFSVIRAAKS WSHEPVLVQA NKVTPLDTVQ PTAPAISLTP TTSEANGQIQ TTIQSLPPAL KHYYCISKHQ HKVDALRRCV
401: HALDAQSVIA FMNHSKQLKD VVYKLEARGM SCAELHGDLG KLGRSTVLKK FKNGEVRVLV TNELSARGLD VAECDLVVNL ELPTDAVHYA HRAGRTGRLG
501: RKGTVVTVCE ESQVFIVKKM EKQLGLPFEY CEFVDGELVV TEEDKAIIR
001: MAASTSTRFL VLLKDFSAFR KISWTCAATN FHRQSRFLCH VAKEDGSLTL ASLDLGNKPR KFGKGKAMKL EGSFVTEMGQ GKVRAVKNDK MKVVKEKKPA
101: EIVSPLFSAK SFEELGLPDS LLDSLEREGF SVPTDVQSAA VPAIIKGHDA VIQSYTGSGK TLAYLLPILS EIGPLAEKSR SSHSENDKRT EIQAMIVAPS
201: RELGMQIVRE VEKLLGPVHR RMVQQLVGGA NRMRQEEALK KNKPAIVVGT PGRIAEISKG GKLHTHGCRF LVLDEVDELL SFNFREDIHR ILEHVGKRSG
301: AGPKGEVDER ANRQTILVSA TVPFSVIRAA KSWSHEPVLV QANKVTPLDT VQPSAPVMSL TPTTSEADGQ IQTTIQSLPP ALKHYYCISK HQHKVDTLRR
401: CVHALDAQSV IAFMNHSRQL KDVVYKLEAR GMNSAEMHGD LGKLGRSTVL KKFKNGEIKV LVTNELSARG LDVAECDLVV NLELPTDAVH YAHRAGRTGR
501: LGRKGTVVTV CEESQVFIVK KMEKQLGLPF LYCEFVDGEL VVTEEDKAII R
101: EIVSPLFSAK SFEELGLPDS LLDSLEREGF SVPTDVQSAA VPAIIKGHDA VIQSYTGSGK TLAYLLPILS EIGPLAEKSR SSHSENDKRT EIQAMIVAPS
201: RELGMQIVRE VEKLLGPVHR RMVQQLVGGA NRMRQEEALK KNKPAIVVGT PGRIAEISKG GKLHTHGCRF LVLDEVDELL SFNFREDIHR ILEHVGKRSG
301: AGPKGEVDER ANRQTILVSA TVPFSVIRAA KSWSHEPVLV QANKVTPLDT VQPSAPVMSL TPTTSEADGQ IQTTIQSLPP ALKHYYCISK HQHKVDTLRR
401: CVHALDAQSV IAFMNHSRQL KDVVYKLEAR GMNSAEMHGD LGKLGRSTVL KKFKNGEIKV LVTNELSARG LDVAECDLVV NLELPTDAVH YAHRAGRTGR
501: LGRKGTVVTV CEESQVFIVK KMEKQLGLPF LYCEFVDGEL VVTEEDKAII R
Arabidopsis Description
RH47DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8W4E1]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.