CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46909	Canola	mitochondrion	58.72	78.42
CDY46912	Canola	mitochondrion	82.31	64.98
AT1G62680.2	Thale cress	plastid	74.62	53.1
CDX67634	Canola	cytosol	47.18	43.5
CDY66357	Canola	cytosol	42.05	43.27
CDY03257	Canola	cytosol	43.08	42.97
CDY39810	Canola	cytosol	42.56	42.46
CDY46394	Canola	mitochondrion	51.79	42.0
CDY09968	Canola	cytosol	31.54	41.84
CDY48949	Canola	mitochondrion	51.54	41.79
CDY06217	Canola	cytosol	31.28	41.64
CDY47835	Canola	mitochondrion	44.87	40.05
CDY49646	Canola	mitochondrion	51.03	39.72
CDX69436	Canola	plastid	50.26	39.36
CDY08386	Canola	cytosol	43.33	37.98
CDY25492	Canola	mitochondrion	47.69	37.88
CDY31271	Canola	mitochondrion	46.67	37.45
CDY34969	Canola	mitochondrion	48.46	37.35
CDY65983	Canola	mitochondrion	39.49	36.49
CDY16002	Canola	cytosol	26.92	33.76
CDY29251	Canola	mitochondrion	43.59	33.53
CDY16031	Canola	cytosol	26.15	32.8
CDX89301	Canola	plastid	43.59	31.78
CDY28348	Canola	mitochondrion, plastid	48.72	31.77
CDY68929	Canola	mitochondrion	49.23	31.63
CDY31272	Canola	mitochondrion	45.13	30.99
CDY16032	Canola	mitochondrion	32.31	30.88
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	43.08	30.6
CDY26588	Canola	extracellular	24.87	29.94
CDY34375	Canola	mitochondrion	39.49	29.79
CDY33797	Canola	mitochondrion	38.97	29.69
CDY00489	Canola	mitochondrion	43.33	28.84
CDY26593	Canola	cytosol	44.87	28.74
CDY33753	Canola	mitochondrion	32.31	28.38
CDY51169	Canola	cytosol	30.26	27.9
CDY26565	Canola	mitochondrion	40.0	27.42
VIT_12s0028g02320.t01	Wine grape	mitochondrion	32.82	26.83
CDY25519	Canola	mitochondrion, plastid	42.05	25.67
CDY35831	Canola	mitochondrion	33.85	25.63
CDY26607	Canola	cytosol	29.23	24.95
CDY34688	Canola	cytosol	23.08	24.86
CDY34870	Canola	mitochondrion	18.21	24.74
Solyc06g007280.2.1	Tomato	cytosol	16.15	24.71
VIT_14s0030g02280.t01	Wine grape	plastid	34.62	24.06
VIT_14s0081g00120.t01	Wine grape	plastid	35.9	24.01
VIT_14s0081g00270.t01	Wine grape	plastid	35.64	23.97
PGSC0003DMT400053556	Potato	mitochondrion	27.95	23.75
CDY16110	Canola	extracellular	24.87	23.66
PGSC0003DMT400008759	Potato	cytosol	18.46	22.57
KRH09256	Soybean	mitochondrion	32.05	22.36
KRH42744	Soybean	mitochondrion	34.87	22.26
PGSC0003DMT400025074	Potato	cytosol	31.28	22.1
KRH58843	Soybean	nucleus	34.62	22.09
Solyc06g007810.1.1	Tomato	cytosol	15.13	22.01
CDY25522	Canola	mitochondrion, plastid	25.13	21.92
KRH70370	Soybean	cytosol	30.51	21.88
Solyc06g007300.1.1	Tomato	extracellular	32.56	21.45
CDY34680	Canola	cytosol	49.74	21.27
CDY16003	Canola	cytosol, plastid	21.28	21.23
PGSC0003DMT400008757	Potato	cytosol	26.92	21.08
Solyc06g007740.1.1	Tomato	cytosol	31.79	21.02
CDX71969	Canola	cytosol	21.28	20.96
KRH49698	Soybean	cytosol	30.51	20.88
VIT_14s0081g00280.t01	Wine grape	mitochondrion	34.1	20.81
Solyc06g005220.2.1	Tomato	cytosol	21.54	20.69
PGSC0003DMT400052971	Potato	mitochondrion	31.28	20.57
KRH38755	Soybean	mitochondrion	31.28	20.54
KRH75045	Soybean	mitochondrion	31.28	20.44
PGSC0003DMT400025087	Potato	endoplasmic reticulum	25.9	20.4
CDX68680	Canola	mitochondrion	24.1	20.35
PGSC0003DMT400052977	Potato	cytosol	20.26	20.31
PGSC0003DMT400015293	Potato	mitochondrion	31.54	20.16
PGSC0003DMT400015298	Potato	mitochondrion	31.54	20.16
VIT_14s0030g02260.t01	Wine grape	cytosol	22.82	20.09
PGSC0003DMT400008760	Potato	mitochondrion	30.0	19.97
PGSC0003DMT400056663	Potato	plastid	30.0	19.9
PGSC0003DMT400053185	Potato	mitochondrion	30.0	19.83
KRH75048	Soybean	mitochondrion	30.77	19.74
CDY34370	Canola	cytosol	41.54	19.73
PGSC0003DMT400056665	Potato	mitochondrion	29.23	19.35
VIT_14s0081g00110.t01	Wine grape	cytosol	24.36	19.35
Solyc04g080120.1.1	Tomato	extracellular	30.26	19.28
KRH75063	Soybean	mitochondrion, plastid	29.74	19.21
PGSC0003DMT400025067	Potato	cytosol	23.08	18.91
PGSC0003DMT400053182	Potato	cytosol	28.21	18.36
CDX81633	Canola	extracellular, golgi, plasma membrane	41.54	17.82
CDY31277	Canola	plastid	31.79	12.93
CDX68679	Canola	cytosol	2.05	6.96
CDY16033	Canola	cytosol	2.31	6.0
CDY26589	Canola	cytosol	0.77	4.35
CDY15970	Canola	cytosol	0.77	3.19
CDY21063	Canola	plastid	2.56	1.82

Protein Annotations

EnsemblPlants:CDY66358	EnsemblPlantsGene:GSBRNA2T00053450001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PFAM:PF12854	PFAM:PF13041
PFscan:PS51375	ProteinID:CDY66358	ProteinID:CDY66358.1	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
TMHMM:TMhelix	UniParc:UPI0004EDDED6	UniProt:A0A078JFK6	MapMan:35.1	:	:

Description

BnaCnng50520DBnaCnng50520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFK6]

Coordinates

chrLK035219:-:9134..10814

Molecular Weight (calculated)

43793.2 Da

IEP (calculated)

7.590

GRAVY (calculated)

-0.039

Length

390 amino acids

Sequence
(BLAST)

001: MQRWLATTAK RLLHCSNLPQ KAKPRTHLPS SSFYHRWARA SSSAINLRER LSRNPNDAIE LFNKMVKSRP YPSIISFTKL LTSLVKLKRY DVVISLSKKM
101: ETLRIRNDLY TFNVLINCFC SCYQVSLALS LLGKMLKLGF EPDKVTLGSL VNGFCLRNRV SEAVDAAGLM SDMIKREISP NVITYSALVD AFVKNGKVLE
201: AKELYEEMIR MSIYPDIVTY SSLINGLCMQ DRVDEASEMF DLMVSRGCFP DVVSYNTLIN GFCKAKRVED GMRLFREMSE RGLVSSTVTY NTLIQGFFEA
301: GDVDMAQEVF SQMDSPDIWT YNILLGGLCD NGEVEKALVM FEDLQKSEME LDIVTYTTVI NGMCKAGFGL ANSSTFSSDG ITGTLPSTPN

Best Arabidopsis Sequence Match ( AT1G62680.1 )
(BLAST)

001: MQRSIAMTAK RFLHRNLLEN GKPRTASSPS FSHCSSCRCW VRASSSVSGG DLRERLSKTR LRDIKLNDAI DLFSDMVKSR PFPSIVDFNR LLSAIVKLKK
101: YDVVISLGKK MEVLGIRNDL YTFNIVINCF CCCFQVSLAL SILGKMLKLG YEPDRVTIGS LVNGFCRRNR VSDAVSLVDK MVEIGYKPDI VAYNAIIDSL
201: CKTKRVNDAF DFFKEIERKG IRPNVVTYTA LVNGLCNSSR WSDAARLLSD MIKKKITPNV ITYSALLDAF VKNGKVLEAK ELFEEMVRMS IDPDIVTYSS
301: LINGLCLHDR IDEANQMFDL MVSKGCLADV VSYNTLINGF CKAKRVEDGM KLFREMSQRG LVSNTVTYNT LIQGFFQAGD VDKAQEFFSQ MDFFGISPDI
401: WTYNILLGGL CDNGELEKAL VIFEDMQKRE MDLDIVTYTT VIRGMCKTGK VEEAWSLFCS LSLKGLKPDI VTYTTMMSGL CTKGLLHEVE ALYTKMKQEG
501: LMKNDCTLSD GDITLSAELI KKMLSCGYAP SLLKDIKSGV CKKALSLL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q3ECK2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.