CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	CDX89318	AT4G26630.1	25387881
AT1G62670.1	CDX94304	AT4G26630.1	25387881
AT1G62670.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34375	Canola	mitochondrion	76.96	66.54
CDY34688	Canola	cytosol	41.39	51.1
AT1G63400.1	Thale cress	cytosol, plastid	61.74	47.83
AT1G63080.3	Thale cress	mitochondrion	62.64	45.6
AT1G63330.2	Thale cress	cytosol	56.82	45.44
AT1G63070.1	Thale cress	mitochondrion	59.73	45.25
AT1G62670.1	Thale cress	mitochondrion	63.09	44.76
AT1G62590.1	Thale cress	mitochondrion	63.09	44.48
AT1G62910.1	Thale cress	mitochondrion	62.42	44.15
AT1G62930.1	Thale cress	plastid	61.97	44.04
AT1G63130.1	Thale cress	mitochondrion	61.3	43.49
AT1G63150.1	Thale cress	mitochondrion	60.63	43.08
AT1G62914.1	Thale cress	mitochondrion	50.11	42.42
CDY26607	Canola	cytosol	40.49	39.61
CDY34870	Canola	mitochondrion	25.28	39.37
CDY16110	Canola	extracellular	35.35	38.54
CDY35831	Canola	mitochondrion	43.85	38.06
CDY03257	Canola	cytosol	32.21	36.83
CDX71969	Canola	cytosol	32.44	36.62
CDY39810	Canola	cytosol	31.77	36.32
CDY65983	Canola	mitochondrion	33.11	35.07
CDY16031	Canola	cytosol	24.38	35.05
CDY26588	Canola	extracellular	25.06	34.57
CDY00489	Canola	mitochondrion	44.97	34.3
CDY51169	Canola	cytosol	32.44	34.28
CDY16003	Canola	cytosol, plastid	29.53	33.76
CDY31272	Canola	mitochondrion	42.51	33.45
CDY33753	Canola	mitochondrion	32.89	33.11
CDY26565	Canola	mitochondrion	41.83	32.86
CDY68929	Canola	mitochondrion	44.07	32.45
CDY34969	Canola	mitochondrion	36.69	32.41
CDY46912	Canola	mitochondrion	35.79	32.39
CDX69436	Canola	plastid	36.02	32.33
CDX68679	Canola	cytosol	8.28	32.17
CDY16002	Canola	cytosol	22.37	32.15
CDY09968	Canola	cytosol	21.03	31.97
CDY08386	Canola	cytosol	31.77	31.91
CDY25492	Canola	mitochondrion	34.9	31.77
CDY06217	Canola	cytosol	20.58	31.4
CDY16033	Canola	cytosol	10.51	31.33
CDX67634	Canola	cytosol	29.53	31.21
CDY49646	Canola	mitochondrion	34.9	31.14
CDY16032	Canola	mitochondrion	28.41	31.13
CDY26593	Canola	cytosol	42.06	30.87
CDY46394	Canola	mitochondrion	33.11	30.77
CDY33797	Canola	mitochondrion	35.12	30.66
CDY48949	Canola	mitochondrion	32.89	30.56
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	36.69	29.87
CDY26589	Canola	cytosol	4.47	28.99
CDY31271	Canola	mitochondrion	31.32	28.81
CDY46909	Canola	mitochondrion	18.79	28.77
Solyc06g007280.2.1	Tomato	cytosol	16.33	28.63
CDY47835	Canola	mitochondrion	26.85	27.46
CDY28348	Canola	mitochondrion, plastid	36.69	27.42
VIT_12s0028g02320.t01	Wine grape	mitochondrion	28.86	27.04
CDY29251	Canola	mitochondrion	29.08	25.64
CDY66358	Canola	mitochondrion	21.92	25.13
Solyc06g005220.2.1	Tomato	cytosol	22.82	25.12
CDX89301	Canola	plastid	29.53	24.67
VIT_14s0081g00110.t01	Wine grape	cytosol	27.07	24.64
CDY25519	Canola	mitochondrion, plastid	34.23	23.94
PGSC0003DMT400025087	Potato	endoplasmic reticulum	26.4	23.84
KRH42744	Soybean	mitochondrion	32.44	23.73
PGSC0003DMT400052977	Potato	cytosol	20.13	23.14
PGSC0003DMT400025067	Potato	cytosol	24.61	23.11
VIT_14s0081g00270.t01	Wine grape	plastid	29.98	23.1
KRH58843	Soybean	nucleus	31.54	23.08
KRH70370	Soybean	cytosol	27.74	22.79
CDX68680	Canola	mitochondrion	23.49	22.73
KRH38755	Soybean	mitochondrion	30.2	22.73
VIT_14s0081g00120.t01	Wine grape	plastid	29.31	22.47
Solyc06g007300.1.1	Tomato	extracellular	29.75	22.47
PGSC0003DMT400025074	Potato	cytosol	27.52	22.28
KRH75048	Soybean	mitochondrion	30.2	22.2
KRH49698	Soybean	cytosol	28.19	22.11
KRH75045	Soybean	mitochondrion	29.31	21.94
CDY66357	Canola	cytosol	18.57	21.9
PGSC0003DMT400053185	Potato	mitochondrion	28.86	21.86
PGSC0003DMT400008757	Potato	cytosol	24.16	21.69
CDX81633	Canola	extracellular, golgi, plasma membrane	44.07	21.67
Solyc06g007740.1.1	Tomato	cytosol	28.41	21.53
KRH75063	Soybean	mitochondrion, plastid	29.08	21.52
VIT_14s0081g00280.t01	Wine grape	mitochondrion	30.65	21.44
PGSC0003DMT400052971	Potato	mitochondrion	28.41	21.42
CDY15970	Canola	cytosol	4.47	21.28
PGSC0003DMT400008760	Potato	mitochondrion	27.74	21.16
KRH09256	Soybean	mitochondrion	25.73	20.57
VIT_14s0030g02280.t01	Wine grape	plastid	25.73	20.5
PGSC0003DMT400056665	Potato	mitochondrion	26.85	20.37
PGSC0003DMT400056663	Potato	plastid	26.4	20.07
PGSC0003DMT400053182	Potato	cytosol	26.85	20.03
PGSC0003DMT400015293	Potato	mitochondrion	27.07	19.84
PGSC0003DMT400015298	Potato	mitochondrion	27.07	19.84
Solyc04g080120.1.1	Tomato	extracellular	26.62	19.44
PGSC0003DMT400008759	Potato	cytosol	13.87	19.44
CDY34370	Canola	cytosol	35.35	19.24
PGSC0003DMT400053556	Potato	mitochondrion	19.69	19.17
Solyc06g007810.1.1	Tomato	cytosol	11.19	18.66
VIT_14s0030g02260.t01	Wine grape	cytosol	16.55	16.7
CDY31277	Canola	plastid	33.56	15.64
CDY34680	Canola	cytosol	24.16	11.84
CDY21063	Canola	plastid	3.58	2.91

Protein Annotations

EnsemblPlants:CDY25522	EnsemblPlantsGene:GSBRNA2T00032766001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	ProteinID:CDY25522	ProteinID:CDY25522.1	TIGRFAMs:TIGR00756	UniParc:UPI0004EE47E2
UniProt:A0A078GK84	MapMan:35.1	:	:	:	:

Description

BnaC09g11470DBnaC09g11470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GK84]

Coordinates

chrLK032176:-:298339..304539

Molecular Weight (calculated)

50561.8 Da

IEP (calculated)

8.111

GRAVY (calculated)

-0.058

Length

447 amino acids

Sequence
(BLAST)

001: MRSILIAIAL APKRFVHQNL QGTGSPLSSL SSFCCWGRAF SGRSDDDYRE KLRNVEKMEM LGITLDLYTY SILINCFCKS SQLPLGFRYK MMKLGYDPNV
101: VTLSSLLNGY CRCNRISEAV ALVDQMVETG YQPNTITFNM LIHGLFLHNK ASEAVALVDR MVAKGCQPDL FTYGVVVNGL CKRGEIDLAL DLIKKMDKLK
201: FEADVVIYST VIDGLCKYKH VDDALDLFSE MEKKGVRGNV VTYNSLISCL CCYGRWRDAS RLLKEMIERK INPTRVTFNA LIDSFAKEGK LLEAESLPNL
301: NTAFMYKEMI QRSIAPDIFT YNSLIYGFCM HNRIDEAKEM FDLMITKDCY PDVVTYNTLI NGFCKAGKVE DARELFCSLS LNGVKPDVIT YTIMISGFGV
401: KRLKQEAVAL FRKMKEDGPL PDDRTYNALI RAHLWDGDKA ASAELKK

Best Arabidopsis Sequence Match ( AT1G63400.1 )
(BLAST)

001: MRISISSVVS STTSRFVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS GDYREILRNG LHSMKLDDAI GLFGGMVKSR PLPSIFEFNK LLSAIAKMKK
101: FDLVISLGEK MQRLGISHNL YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL
201: FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD IDLAFNLLNK MEAAKIEANV VIYSTVIDSL CKYRHEDDAL NLFTEMENKG VRPNVITYSS
301: LISCLCNYER WSDASRLLSD MIERKINPNV VTFNALIDAF VKEGKLVEAE KLYDEMIKRS IDPDIFTYSS LINGFCMHDR LDEAKHMFEL MISKDCFPNV
401: VTYNTLINGF CKAKRIDEGV ELFREMSQRG LVGNTVTYTT LIHGFFQARD CDNAQMVFKQ MVSDGVHPNI MTYNTLLDGL CKNGKLEKAM VVFEYLQRSK
501: MEPTIYTYNI MIEGMCKAGK VEDGWDLFCS LSLKGVKPDV IIYNTMISGF CRKGLKEEAD ALFRKMREDG PLPDSGT

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g63400 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH26]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.