CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34370	Canola	cytosol	93.27	72.59
CDY26588	Canola	extracellular	27.23	53.7
CDY16031	Canola	cytosol	24.88	51.13
CDY16002	Canola	cytosol	24.41	50.16
CDY16110	Canola	extracellular	30.52	47.56
CDY51169	Canola	cytosol	30.99	46.81
CDY31271	Canola	mitochondrion	35.21	46.3
CDY31272	Canola	mitochondrion	40.38	45.42
CDY34870	Canola	mitochondrion	20.34	45.3
CDY26607	Canola	cytosol	31.77	44.42
CDY68929	Canola	mitochondrion	42.1	44.32
CDY33753	Canola	mitochondrion	30.67	44.14
CDY00489	Canola	mitochondrion	40.38	44.03
CDY03257	Canola	cytosol	26.92	43.99
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	37.56	43.72
CDY39810	Canola	cytosol	26.45	43.22
CDY33797	Canola	mitochondrion	34.43	42.97
CDY06217	Canola	cytosol	19.56	42.66
CDX69436	Canola	plastid	33.18	42.57
CDY09968	Canola	cytosol	19.56	42.52
AT1G64100.2	Thale cress	cytosol	53.52	42.43
CDY26565	Canola	mitochondrion	37.72	42.35
CDX67634	Canola	cytosol	28.01	42.32
CDY65983	Canola	mitochondrion	27.86	42.18
CDX71969	Canola	cytosol	26.13	42.17
CDY16032	Canola	mitochondrion	26.92	42.16
VIT_12s0028g02320.t01	Wine grape	mitochondrion	31.46	42.14
CDY35831	Canola	mitochondrion	33.96	42.14
CDY66358	Canola	mitochondrion	25.67	42.05
CDY25492	Canola	mitochondrion	32.24	41.96
CDY26593	Canola	cytosol	39.91	41.87
CDY46909	Canola	mitochondrion	19.09	41.78
CDY34375	Canola	mitochondrion	33.33	41.2
CDY34688	Canola	cytosol	23.32	41.16
CDY08386	Canola	cytosol	28.64	41.12
CDY49646	Canola	mitochondrion	31.77	40.52
CDY16003	Canola	cytosol, plastid	24.57	40.15
Solyc06g007280.2.1	Tomato	cytosol	15.81	39.61
CDY48949	Canola	mitochondrion	29.73	39.5
CDY46394	Canola	mitochondrion	29.58	39.29
CDY47835	Canola	mitochondrion	26.76	39.13
CDY46912	Canola	mitochondrion	29.73	38.46
CDY34969	Canola	mitochondrion	30.05	37.94
VIT_14s0081g00270.t01	Wine grape	plastid	33.49	36.9
CDY29251	Canola	mitochondrion	28.95	36.49
VIT_14s0081g00110.t01	Wine grape	cytosol	27.86	36.25
VIT_14s0081g00120.t01	Wine grape	plastid	32.39	35.51
CDX89301	Canola	plastid	29.42	35.14
Solyc06g005220.2.1	Tomato	cytosol	22.22	34.98
CDY28348	Canola	mitochondrion, plastid	32.24	34.45
KRH70370	Soybean	cytosol	29.26	34.38
CDY25522	Canola	mitochondrion, plastid	23.94	34.23
VIT_14s0030g02280.t01	Wine grape	plastid	29.73	33.87
PGSC0003DMT400008757	Potato	cytosol	25.98	33.33
KRH58843	Soybean	nucleus	31.77	33.22
PGSC0003DMT400008759	Potato	cytosol	16.43	32.92
KRH49698	Soybean	cytosol	29.26	32.81
KRH42744	Soybean	mitochondrion	31.14	32.57
VIT_14s0081g00280.t01	Wine grape	mitochondrion	32.39	32.39
PGSC0003DMT400052977	Potato	cytosol	19.56	32.13
PGSC0003DMT400025074	Potato	cytosol	27.7	32.07
Solyc06g007740.1.1	Tomato	cytosol	29.42	31.86
PGSC0003DMT400056665	Potato	mitochondrion	29.26	31.75
KRH38755	Soybean	mitochondrion	29.42	31.65
PGSC0003DMT400008760	Potato	mitochondrion	28.95	31.57
PGSC0003DMT400056663	Potato	plastid	28.95	31.46
CDX68680	Canola	mitochondrion	22.69	31.39
KRH09256	Soybean	mitochondrion	27.39	31.31
KRH75045	Soybean	mitochondrion	29.11	31.16
KRH75063	Soybean	mitochondrion, plastid	29.42	31.13
PGSC0003DMT400025087	Potato	endoplasmic reticulum	24.1	31.11
Solyc06g007300.1.1	Tomato	extracellular	28.8	31.08
KRH75048	Soybean	mitochondrion	29.42	30.92
PGSC0003DMT400052971	Potato	mitochondrion	28.48	30.69
PGSC0003DMT400053556	Potato	mitochondrion	21.91	30.5
PGSC0003DMT400053185	Potato	mitochondrion	27.23	29.49
PGSC0003DMT400053182	Potato	cytosol	27.54	29.38
PGSC0003DMT400015293	Potato	mitochondrion	28.01	29.34
PGSC0003DMT400015298	Potato	mitochondrion	28.01	29.34
CDY66357	Canola	cytosol	17.37	29.29
PGSC0003DMT400025067	Potato	cytosol	21.6	28.99
Solyc04g080120.1.1	Tomato	extracellular	27.54	28.76
CDX81633	Canola	extracellular, golgi, plasma membrane	40.38	28.38
Solyc06g007810.1.1	Tomato	cytosol	11.89	28.36
VIT_14s0030g02260.t01	Wine grape	cytosol	19.09	27.54
CDY16033	Canola	cytosol	6.26	26.67
CDX68679	Canola	cytosol	4.54	25.22
CDY31277	Canola	plastid	30.83	20.54
CDY26589	Canola	cytosol	2.19	20.29
CDY15970	Canola	cytosol	2.82	19.15
CDY34680	Canola	cytosol	22.38	15.68
CDY21063	Canola	plastid	2.82	3.28

Protein Annotations

EnsemblPlants:CDY25519	EnsemblPlantsGene:GSBRNA2T00032761001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PFAM:PF12854	PFAM:PF13041
PFscan:PS51375	ProteinID:CDY25519	ProteinID:CDY25519.1	SEG:seg	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
UniParc:UPI0004EEDE5E	UniProt:A0A078GJW7	MapMan:35.1	:	:	:

Description

BnaC09g11440DBnaC09g11440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJW7]

Coordinates

chrLK032176:-:277835..279979

Molecular Weight (calculated)

71307.5 Da

IEP (calculated)

7.588

GRAVY (calculated)

0.059

Length

639 amino acids

Sequence
(BLAST)

001: MLARVCRFES SSSVPAARLF CTRSIRHTLA KKSSGKAGGF GGERLKLQSG FHEIKGLDDA IDLFGYMVRS RPLPCVIDFC KLLGVVVRME RPDVVISLHR
101: KMEMRRIPCN IYSFTILIKC FCSCSKLPFA LSTFGKITKL GFHPSLVTFS TLLHGLCVED RVSEALHFFR QICKPNVIAF TTLMNGLCRE GRVVEAVALL
201: DRMVEDGLQP NQITYGTIVD GMCKMGDTVS ALNLLRKMEE VSRIKPNVVI YSAIIDGLWK DGRHTDAQNL FSEMQEKGIS PNLFTYNCMI NGFCSSGRWS
301: EAQRLLREMF ERKMSPDVVT FSVLINALVK EGKFFEAEEL YNEMLPRGII PNTITYNSMI DGFSKQNRLD AAERMFYLMA TKGCSPDVIT FSILIDGYCG
401: AKRVDDGMKL LHEMSRRGLV ANTITYTTLI HGFCQLGNLN AALDLLQEMI SSGVCPNVVT CNTLLDGLCN NGKLKDALEM FKVMQKSKMD LDAIPDTITY
501: NSVIDGLCKQ SRLDEATQMF DSMGSKGFSP DVVTFTTLIN GYCKVGRVGD GLEVFCEMGR RGIVANAITY RTLIHGFCQV GNINGALDIF QEMISSGVYP
601: DTITIRNMLT GLWSKEELKR AVAMLEDLLM SVGYQLEDE

Best Arabidopsis Sequence Match ( AT1G64100.1 )
(BLAST)

001: MTLQSQSSHC LNVHSSMVRD IEKCEQKTKR DIEKKNTKSG GVRLNSRRLI HGRVAEKGTK SLPSLTQVTF EGEELKLKSG SHYFKSLDDA IDFFDYMVRS
101: RPFYTAVDCN KVIGVFVRMN RPDVAISLYR KMEIRRIPLN IYSFNILIKC FCDCHKLSFS LSTFGKLTKL GFQPDVVTFN TLLHGLCLED RISEALALFG
201: YMVETGFLEA VALFDQMVEI GLTPVVITFN TLINGLCLEG RVLEAAALVN KMVGKGLHID VVTYGTIVNG MCKMGDTKSA LNLLSKMEET HIKPDVVIYS
301: AIIDRLCKDG HHSDAQYLFS EMLEKGIAPN VFTYNCMIDG FCSFGRWSDA QRLLRDMIER EINPDVLTFN ALISASVKEG KLFEAEKLCD EMLHRCIFPD
401: TVTYNSMIYG FCKHNRFDDA KHMFDLMASP DVVTFNTIID VYCRAKRVDE GMQLLREISR RGLVANTTTY NTLIHGFCEV DNLNAAQDLF QEMISHGVCP
501: DTITCNILLY GFCENEKLEE ALELFEVIQM SKIDLDTVAY NIIIHGMCKG SKVDEAWDLF CSLPIHGVEP DVQTYNVMIS GFCGKSAISD ANVLFHKMKD
601: NGHEPDNSTY NTLIRGCLKA GEIDKSIELI SEMRSNGFSG DAFTIKMVAD LITDGRLDKS FSDMLS

Arabidopsis Description

Pentatricopeptide (PPR) repeat-containing protein [Source:UniProtKB/TrEMBL;Acc:A8MRJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.