Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09968 | Canola | cytosol | 95.9 | 95.58 |
| CDY46909 | Canola | mitochondrion | 46.76 | 46.92 |
| CDY39810 | Canola | cytosol | 52.56 | 39.39 |
| CDY03257 | Canola | cytosol | 51.54 | 38.62 |
| CDY08386 | Canola | cytosol | 57.34 | 37.75 |
| AT1G06580.1 | Thale cress | mitochondrion | 63.48 | 37.2 |
| CDY16031 | Canola | cytosol | 39.25 | 36.98 |
| CDY16002 | Canola | cytosol | 39.25 | 36.98 |
| CDY51169 | Canola | cytosol | 52.56 | 36.41 |
| CDX67634 | Canola | cytosol | 51.88 | 35.93 |
| CDY66357 | Canola | cytosol | 45.39 | 35.09 |
| CDY26588 | Canola | extracellular | 38.57 | 34.88 |
| CDY25492 | Canola | mitochondrion | 56.31 | 33.6 |
| CDX69436 | Canola | plastid | 54.61 | 32.13 |
| CDY49646 | Canola | mitochondrion | 54.61 | 31.94 |
| CDY47835 | Canola | mitochondrion | 47.1 | 31.58 |
| CDY48949 | Canola | mitochondrion | 51.54 | 31.39 |
| CDY46394 | Canola | mitochondrion | 51.54 | 31.39 |
| CDY66358 | Canola | mitochondrion | 41.64 | 31.28 |
| CDY16110 | Canola | extracellular | 43.69 | 31.22 |
| CDY46912 | Canola | mitochondrion | 51.88 | 30.77 |
| CDY34688 | Canola | cytosol | 37.54 | 30.39 |
| CDY34969 | Canola | mitochondrion | 52.22 | 30.24 |
| PGSC0003DMT400008759 | Potato | cytosol | 32.76 | 30.09 |
| CDY65983 | Canola | mitochondrion | 43.0 | 29.86 |
| CDX68679 | Canola | cytosol | 10.92 | 27.83 |
| PGSC0003DMT400052977 | Potato | cytosol | 36.18 | 27.25 |
| Solyc06g007810.1.1 | Tomato | cytosol | 24.91 | 27.24 |
| CDY26607 | Canola | cytosol | 42.32 | 27.13 |
| CDX71969 | Canola | cytosol | 36.52 | 27.02 |
| Solyc06g005220.2.1 | Tomato | cytosol | 36.52 | 26.35 |
| Solyc06g007280.2.1 | Tomato | cytosol | 22.87 | 26.27 |
| CDY16033 | Canola | cytosol | 13.31 | 26.0 |
| CDY16026 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole | 48.12 | 25.68 |
| VIT_14s0081g00110.t01 | Wine grape | cytosol | 43.0 | 25.66 |
| CDY28348 | Canola | mitochondrion, plastid | 52.22 | 25.59 |
| VIT_14s0030g02260.t01 | Wine grape | cytosol | 38.23 | 25.28 |
| CDY33753 | Canola | mitochondrion | 37.54 | 24.77 |
| CDY34375 | Canola | mitochondrion | 43.69 | 24.76 |
| CDY33797 | Canola | mitochondrion | 43.0 | 24.61 |
| VIT_12s0028g02320.t01 | Wine grape | mitochondrion | 39.59 | 24.32 |
| CDY29251 | Canola | mitochondrion | 41.98 | 24.26 |
| CDY68929 | Canola | mitochondrion | 50.17 | 24.22 |
| CDY00489 | Canola | mitochondrion | 48.12 | 24.06 |
| CDY26593 | Canola | cytosol | 49.83 | 23.97 |
| CDY31272 | Canola | mitochondrion | 46.08 | 23.77 |
| CDY31271 | Canola | mitochondrion | 38.57 | 23.25 |
| CDY26565 | Canola | mitochondrion | 44.71 | 23.02 |
| CDX89301 | Canola | plastid | 41.98 | 22.99 |
| CDY35831 | Canola | mitochondrion | 40.27 | 22.91 |
| KRH70370 | Soybean | cytosol | 41.3 | 22.24 |
| VIT_14s0081g00270.t01 | Wine grape | plastid | 42.66 | 21.55 |
| KRH09256 | Soybean | mitochondrion | 40.61 | 21.29 |
| PGSC0003DMT400025067 | Potato | cytosol | 34.13 | 21.01 |
| PGSC0003DMT400025087 | Potato | endoplasmic reticulum | 35.15 | 20.81 |
| VIT_14s0081g00120.t01 | Wine grape | plastid | 40.96 | 20.58 |
| CDY25522 | Canola | mitochondrion, plastid | 31.4 | 20.58 |
| KRH49698 | Soybean | cytosol | 39.59 | 20.35 |
| PGSC0003DMT400008757 | Potato | cytosol | 34.47 | 20.28 |
| KRH38755 | Soybean | mitochondrion | 40.61 | 20.03 |
| VIT_14s0030g02280.t01 | Wine grape | plastid | 37.54 | 19.61 |
| KRH75045 | Soybean | mitochondrion | 39.93 | 19.6 |
| KRH75048 | Soybean | mitochondrion | 40.61 | 19.57 |
| CDY25519 | Canola | mitochondrion, plastid | 42.66 | 19.56 |
| PGSC0003DMT400053556 | Potato | mitochondrion | 30.38 | 19.39 |
| KRH42744 | Soybean | mitochondrion | 40.27 | 19.31 |
| VIT_14s0081g00280.t01 | Wine grape | mitochondrion | 41.64 | 19.09 |
| KRH75063 | Soybean | mitochondrion, plastid | 39.25 | 19.04 |
| Solyc06g007300.1.1 | Tomato | extracellular | 38.23 | 18.92 |
| PGSC0003DMT400025074 | Potato | cytosol | 35.49 | 18.84 |
| KRH58843 | Soybean | nucleus | 39.25 | 18.82 |
| PGSC0003DMT400008760 | Potato | mitochondrion | 37.2 | 18.6 |
| PGSC0003DMT400056665 | Potato | mitochondrion | 36.86 | 18.34 |
| PGSC0003DMT400056663 | Potato | plastid | 36.52 | 18.2 |
| Solyc06g007740.1.1 | Tomato | cytosol | 36.52 | 18.14 |
| PGSC0003DMT400052971 | Potato | mitochondrion | 36.52 | 18.04 |
| PGSC0003DMT400053185 | Potato | mitochondrion | 35.49 | 17.63 |
| CDY16032 | Canola | mitochondrion | 23.89 | 17.16 |
| CDY34680 | Canola | cytosol | 50.85 | 16.34 |
| PGSC0003DMT400053182 | Potato | cytosol | 32.76 | 16.03 |
| CDY34370 | Canola | cytosol | 43.0 | 15.35 |
| CDY34870 | Canola | mitochondrion | 15.02 | 15.33 |
| PGSC0003DMT400015298 | Potato | mitochondrion | 31.74 | 15.25 |
| PGSC0003DMT400015293 | Potato | mitochondrion | 31.74 | 15.25 |
| Solyc04g080120.1.1 | Tomato | extracellular | 31.74 | 15.2 |
| CDX81633 | Canola | extracellular, golgi, plasma membrane | 46.08 | 14.85 |
| CDX68680 | Canola | mitochondrion | 21.84 | 13.85 |
| CDY31277 | Canola | plastid | 39.59 | 12.1 |
| CDY16003 | Canola | cytosol, plastid | 13.31 | 9.97 |
| CDY26589 | Canola | cytosol | 1.71 | 7.25 |
| CDY15970 | Canola | cytosol | 1.71 | 5.32 |
| CDY21063 | Canola | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY06217 | EnsemblPlantsGene:GSBRNA2T00122128001 | Gene3D:1.25.40.10 | GO:A0A078EZ39 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF1649 | PFAM:PF13041 | PFscan:PS51375 | ProteinID:CDY06217 | ProteinID:CDY06217.1 | SEG:seg |
| TIGRFAMs:TIGR00756 | TMHMM:TMhelix | UniParc:UPI0004EDFB76 | MapMan:35.1 | : | : |
Description
BnaA09g49860D
Coordinates
chrLK031968:-:321657..322538
Molecular Weight (calculated)
33481.9 Da
IEP (calculated)
8.407
GRAVY (calculated)
0.224
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MENVGVRPDV VSYNSLITGL FSAGVWGLSA RLLSDMMKKG IKPDVITFSA VIDAFVKEGR ILEAKGVYKE MIRRSVDPNI VTYNSLINGL CMNNRLDEAK
101: YMFRLMVRRG CSPNLVTYNT LINGFCKSMR VDDGMRIFFM MVRDGLVGDR VTYNTLFQGY CQLGRFNAAD EILCRMVSCG VRRDIFTYNI LLDCLCVERA
201: LVLLEDMEKS EMVIGIITYN IIIKGMCKAG MVEEAWCLFC SLGLKGVMPD VVTYMTMIVG FFRKGMWREA HDLCIRMIMD GFMPIEWRYK RGH
101: YMFRLMVRRG CSPNLVTYNT LINGFCKSMR VDDGMRIFFM MVRDGLVGDR VTYNTLFQGY CQLGRFNAAD EILCRMVSCG VRRDIFTYNI LLDCLCVERA
201: LVLLEDMEKS EMVIGIITYN IIIKGMCKAG MVEEAWCLFC SLGLKGVMPD VVTYMTMIVG FFRKGMWREA HDLCIRMIMD GFMPIEWRYK RGH
001: MRRSIVIVIA LTAKGFLHRH LLEKGNLVTA LSLRICNSRA FSGRSDYRER LRSGLHSIKF NDALTLFCDM AESHPLPSIV DFSRLLIAIA KLNKYEAVIS
101: LFRHLEMLGI SHDLYSFTTL IDCFCRCARL SLALSCLGKM MKLGFEPSIV TFGSLVNGFC HVNRFYEAMS LVDQIVGLGY EPNVVIYNTI IDSLCEKGQV
201: NTALDVLKHM KKMGIRPDVV TYNSLITRLF HSGTWGVSAR ILSDMMRMGI SPDVITFSAL IDVYGKEGQL LEAKKQYNEM IQRSVNPNIV TYNSLINGLC
301: IHGLLDEAKK VLNVLVSKGF FPNAVTYNTL INGYCKAKRV DDGMKILCVM SRDGVDGDTF TYNTLYQGYC QAGKFSAAEK VLGRMVSCGV HPDMYTFNIL
401: LDGLCDHGKI GKALVRLEDL QKSKTVVGII TYNIIIKGLC KADKVEDAWY LFCSLALKGV SPDVITYITM MIGLRRKRLW REAHELYRKM QKEDGLMPIK
101: LFRHLEMLGI SHDLYSFTTL IDCFCRCARL SLALSCLGKM MKLGFEPSIV TFGSLVNGFC HVNRFYEAMS LVDQIVGLGY EPNVVIYNTI IDSLCEKGQV
201: NTALDVLKHM KKMGIRPDVV TYNSLITRLF HSGTWGVSAR ILSDMMRMGI SPDVITFSAL IDVYGKEGQL LEAKKQYNEM IQRSVNPNIV TYNSLINGLC
301: IHGLLDEAKK VLNVLVSKGF FPNAVTYNTL INGYCKAKRV DDGMKILCVM SRDGVDGDTF TYNTLYQGYC QAGKFSAAEK VLGRMVSCGV HPDMYTFNIL
401: LDGLCDHGKI GKALVRLEDL QKSKTVVGII TYNIIIKGLC KADKVEDAWY LFCSLALKGV SPDVITYITM MIGLRRKRLW REAHELYRKM QKEDGLMPIK
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g06580 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHK2]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.