Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra025516.1-P | Field mustard | cytosol, mitochondrion | 98.58 | 87.42 |
CDY48949 | Canola | mitochondrion | 99.05 | 87.11 |
CDY46394 | Canola | mitochondrion | 99.05 | 87.11 |
AT5G41170.1 | Thale cress | mitochondrion | 74.47 | 59.77 |
CDY46909 | Canola | mitochondrion | 38.06 | 55.14 |
CDY39810 | Canola | cytosol | 49.65 | 53.71 |
CDY03257 | Canola | cytosol | 49.65 | 53.71 |
CDY09968 | Canola | cytosol | 36.17 | 52.04 |
CDY06217 | Canola | cytosol | 35.93 | 51.88 |
CDY34969 | Canola | mitochondrion | 58.39 | 48.81 |
CDY66358 | Canola | mitochondrion | 43.5 | 47.18 |
CDY08386 | Canola | cytosol | 49.41 | 46.97 |
CDY46912 | Canola | mitochondrion | 54.14 | 46.36 |
CDY65983 | Canola | mitochondrion | 46.1 | 46.21 |
CDX69436 | Canola | plastid | 54.37 | 46.18 |
CDY25492 | Canola | mitochondrion | 53.43 | 46.03 |
CDY49646 | Canola | mitochondrion | 53.43 | 45.11 |
CDY16031 | Canola | cytosol | 30.73 | 41.8 |
CDY28348 | Canola | mitochondrion, plastid | 57.92 | 40.97 |
CDY26588 | Canola | extracellular | 30.26 | 39.51 |
CDY51169 | Canola | cytosol | 39.01 | 39.01 |
CDY47835 | Canola | mitochondrion | 40.19 | 38.9 |
CDY29251 | Canola | mitochondrion | 46.57 | 38.86 |
CDY16002 | Canola | cytosol | 27.9 | 37.94 |
CDX89301 | Canola | plastid | 46.81 | 37.01 |
CDY33797 | Canola | mitochondrion | 44.68 | 36.91 |
CDY34688 | Canola | cytosol | 31.44 | 36.74 |
CDY16110 | Canola | extracellular | 34.99 | 36.1 |
CDY34375 | Canola | mitochondrion | 43.74 | 35.78 |
CDY16026 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole | 46.34 | 35.7 |
VIT_12s0028g02320.t01 | Wine grape | mitochondrion | 40.19 | 35.64 |
CDY26593 | Canola | cytosol | 51.3 | 35.63 |
CDY66357 | Canola | cytosol | 31.91 | 35.62 |
CDY31272 | Canola | mitochondrion | 46.57 | 34.68 |
CDY31271 | Canola | mitochondrion | 39.01 | 33.95 |
CDY26565 | Canola | mitochondrion | 44.21 | 32.86 |
CDY68929 | Canola | mitochondrion | 47.04 | 32.78 |
CDY00489 | Canola | mitochondrion | 45.39 | 32.76 |
CDY26607 | Canola | cytosol | 35.22 | 32.6 |
CDX71969 | Canola | cytosol | 30.02 | 32.07 |
CDY16032 | Canola | mitochondrion | 30.5 | 31.62 |
CDY33753 | Canola | mitochondrion | 32.62 | 31.08 |
PGSC0003DMT400008759 | Potato | cytosol | 23.17 | 30.72 |
CDY35831 | Canola | mitochondrion | 37.12 | 30.49 |
KRH70370 | Soybean | cytosol | 39.01 | 30.33 |
PGSC0003DMT400052977 | Potato | cytosol | 27.66 | 30.08 |
VIT_14s0081g00270.t01 | Wine grape | plastid | 40.9 | 29.83 |
KRH49698 | Soybean | cytosol | 40.19 | 29.82 |
VIT_14s0081g00110.t01 | Wine grape | cytosol | 34.52 | 29.74 |
CDY25522 | Canola | mitochondrion, plastid | 31.21 | 29.53 |
VIT_14s0030g02280.t01 | Wine grape | plastid | 39.01 | 29.41 |
Solyc06g005220.2.1 | Tomato | cytosol | 27.9 | 29.06 |
KRH09256 | Soybean | mitochondrion | 38.3 | 28.98 |
VIT_14s0081g00120.t01 | Wine grape | plastid | 39.72 | 28.82 |
PGSC0003DMT400008757 | Potato | cytosol | 33.81 | 28.71 |
KRH42744 | Soybean | mitochondrion | 41.13 | 28.48 |
Solyc06g007810.1.1 | Tomato | cytosol | 17.97 | 28.36 |
KRH58843 | Soybean | nucleus | 40.9 | 28.31 |
Solyc06g007280.2.1 | Tomato | cytosol | 17.02 | 28.24 |
PGSC0003DMT400025087 | Potato | endoplasmic reticulum | 32.86 | 28.08 |
CDY25519 | Canola | mitochondrion, plastid | 42.32 | 28.01 |
CDY16033 | Canola | cytosol | 9.93 | 28.0 |
KRH75063 | Soybean | mitochondrion, plastid | 39.95 | 27.98 |
KRH75045 | Soybean | mitochondrion | 39.24 | 27.81 |
KRH38755 | Soybean | mitochondrion | 38.77 | 27.61 |
CDY34870 | Canola | mitochondrion | 18.68 | 27.53 |
PGSC0003DMT400008760 | Potato | mitochondrion | 37.83 | 27.3 |
VIT_14s0081g00280.t01 | Wine grape | mitochondrion | 40.66 | 26.92 |
PGSC0003DMT400025067 | Potato | cytosol | 30.26 | 26.89 |
KRH75048 | Soybean | mitochondrion | 38.3 | 26.64 |
PGSC0003DMT400025074 | Potato | cytosol | 34.52 | 26.45 |
VIT_14s0030g02260.t01 | Wine grape | cytosol | 27.42 | 26.19 |
Solyc06g007300.1.1 | Tomato | extracellular | 36.41 | 26.01 |
PGSC0003DMT400052971 | Potato | mitochondrion | 36.17 | 25.8 |
PGSC0003DMT400056665 | Potato | mitochondrion | 35.7 | 25.64 |
PGSC0003DMT400053556 | Potato | mitochondrion | 27.66 | 25.49 |
CDX68679 | Canola | cytosol | 6.86 | 25.22 |
Solyc06g007740.1.1 | Tomato | cytosol | 34.99 | 25.08 |
CDY16003 | Canola | cytosol, plastid | 23.17 | 25.06 |
PGSC0003DMT400015298 | Potato | mitochondrion | 35.7 | 24.75 |
PGSC0003DMT400015293 | Potato | mitochondrion | 35.7 | 24.75 |
PGSC0003DMT400056663 | Potato | plastid | 34.04 | 24.49 |
PGSC0003DMT400053185 | Potato | mitochondrion | 33.81 | 24.24 |
Solyc04g080120.1.1 | Tomato | extracellular | 34.99 | 24.18 |
PGSC0003DMT400053182 | Potato | cytosol | 32.86 | 23.21 |
CDX68680 | Canola | mitochondrion | 25.3 | 23.16 |
CDY34370 | Canola | cytosol | 42.32 | 21.8 |
CDX81633 | Canola | extracellular, golgi, plasma membrane | 45.86 | 21.34 |
CDY34680 | Canola | cytosol | 42.55 | 19.74 |
CDY31277 | Canola | plastid | 38.53 | 17.0 |
CDY26589 | Canola | cytosol | 1.18 | 7.25 |
CDY15970 | Canola | cytosol | 0.95 | 4.26 |
CDY21063 | Canola | plastid | 1.18 | 0.91 |
Protein Annotations
EnsemblPlants:CDX67634 | EnsemblPlantsGene:GSBRNA2T00098792001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PFAM:PF12854 | PFAM:PF13041 |
PFscan:PS51375 | ProteinID:CDX67634 | ProteinID:CDX67634.1 | SEG:seg | TIGRFAMs:TIGR00756 | UniParc:UPI0004EF40F7 |
MapMan:35.1 | : | : | : | : | : |
Description
BnaA07g16740D
Coordinates
chrLK031787:-:1428839..1430154
Molecular Weight (calculated)
47207.9 Da
IEP (calculated)
8.148
GRAVY (calculated)
0.067
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MVESRPLPST VDFTKLLTAI SKSKRFDVVI ALCNHLETLG IPHDLYTCNL VMNCFSRSSQ PHLASSFLGK MMKLGFSPDI VTFTSLVNGN RPEDAMYIVN
101: QMGIEPDVVM YTTLIESLCR NGLVDNAMSL FNQMESNGVK ADAVTYTSLV NGLCNSGRLS DAVSLLNDMM RRRINPDVVT FNALIDGFVK KGKLLEAREV
201: YSEMIRVSVA PDVFTHTSLI NGLCMEGRVD EAKEMFYSME DKGCFPDVVA YTSLINGFCK SRKVEYGMKL FYEMTQRGLL GNTVTYTALI QGFCQVGRHK
301: AAQEFFSQMV SRGVSPNIRT YNVLLHGLCL NGKLGKALLI FEDIQKREID VNIITYTIII QGMCKAGKLR DAVDLFCSLP SKGMKPNVVT YSTMISGLFR
401: EGFKLEAHVL FRKMKEDGVV LQN
101: QMGIEPDVVM YTTLIESLCR NGLVDNAMSL FNQMESNGVK ADAVTYTSLV NGLCNSGRLS DAVSLLNDMM RRRINPDVVT FNALIDGFVK KGKLLEAREV
201: YSEMIRVSVA PDVFTHTSLI NGLCMEGRVD EAKEMFYSME DKGCFPDVVA YTSLINGFCK SRKVEYGMKL FYEMTQRGLL GNTVTYTALI QGFCQVGRHK
301: AAQEFFSQMV SRGVSPNIRT YNVLLHGLCL NGKLGKALLI FEDIQKREID VNIITYTIII QGMCKAGKLR DAVDLFCSLP SKGMKPNVVT YSTMISGLFR
401: EGFKLEAHVL FRKMKEDGVV LQN
001: MAMRFFQLHR NRLVKGNSGK ALSFSRLLDL SFWVRAFCNY REILRNGLHS LQFNEALDLF THMVESRPLP SIIDFTKLLN VIAKMKKFDV VINLCDHLQI
101: MGVSHDLYTC NLLMNCFCQS SQPYLASSFL GKMMKLGFEP DIVTFTSLIN GFCLGNRMEE AMSMVNQMVE MGIKPDVVMY TTIIDSLCKN GHVNYALSLF
201: DQMENYGIRP DVVMYTSLVN GLCNSGRWRD ADSLLRGMTK RKIKPDVITF NALIDAFVKE GKFLDAEELY NEMIRMSIAP NIFTYTSLIN GFCMEGCVDE
301: ARQMFYLMET KGCFPDVVAY TSLINGFCKC KKVDDAMKIF YEMSQKGLTG NTITYTTLIQ GFGQVGKPNV AQEVFSHMVS RGVPPNIRTY NVLLHCLCYN
401: GKVKKALMIF EDMQKREMDG VAPNIWTYNV LLHGLCYNGK LEKALMVFED MRKREMDIGI ITYTIIIQGM CKAGKVKNAV NLFCSLPSKG VKPNVVTYTT
501: MISGLFREGL KHEAHVLFRK MKEDGVS
101: MGVSHDLYTC NLLMNCFCQS SQPYLASSFL GKMMKLGFEP DIVTFTSLIN GFCLGNRMEE AMSMVNQMVE MGIKPDVVMY TTIIDSLCKN GHVNYALSLF
201: DQMENYGIRP DVVMYTSLVN GLCNSGRWRD ADSLLRGMTK RKIKPDVITF NALIDAFVKE GKFLDAEELY NEMIRMSIAP NIFTYTSLIN GFCMEGCVDE
301: ARQMFYLMET KGCFPDVVAY TSLINGFCKC KKVDDAMKIF YEMSQKGLTG NTITYTTLIQ GFGQVGKPNV AQEVFSHMVS RGVPPNIRTY NVLLHCLCYN
401: GKVKKALMIF EDMQKREMDG VAPNIWTYNV LLHGLCYNGK LEKALMVFED MRKREMDIGI ITYTIIIQGM CKAGKVKNAV NLFCSLPSKG VKPNVVTYTT
501: MISGLFREGL KHEAHVLFRK MKEDGVS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At5g41170, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLL3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.