Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY06217 Canola cytosol 95.58 95.9
CDY46909 Canola mitochondrion 46.94 47.26
CDY39810 Canola cytosol 53.06 39.9
CDY03257 Canola cytosol 52.04 39.13
CDY16031 Canola cytosol 39.8 37.62
CDY08386 Canola cytosol 56.8 37.53
AT1G06580.1 Thale cress mitochondrion 63.61 37.4
CDY51169 Canola cytosol 53.4 37.12
CDY16002 Canola cytosol 39.12 36.98
CDX67634 Canola cytosol 52.04 36.17
CDY66357 Canola cytosol 45.92 35.62
CDY26588 Canola extracellular 38.78 35.19
CDY25492 Canola mitochondrion 56.46 33.81
CDY49646 Canola mitochondrion 55.44 32.53
CDX69436 Canola plastid 54.76 32.33
CDY16110 Canola extracellular 44.22 31.71
CDY48949 Canola mitochondrion 51.7 31.6
CDY46394 Canola mitochondrion 51.7 31.6
CDY47835 Canola mitochondrion 46.94 31.58
CDY66358 Canola mitochondrion 41.84 31.54
CDY46912 Canola mitochondrion 52.04 30.97
CDY34969 Canola mitochondrion 53.06 30.83
PGSC0003DMT400008759 Potato cytosol 33.33 30.72
CDY34688 Canola cytosol 37.76 30.66
CDY65983 Canola mitochondrion 43.88 30.57
CDX68679 Canola cytosol 11.22 28.7
PGSC0003DMT400052977 Potato cytosol 36.73 27.76
Solyc06g007810.1.1 Tomato cytosol 25.17 27.61
CDY26607 Canola cytosol 42.52 27.35
CDX71969 Canola cytosol 36.73 27.27
Solyc06g005220.2.1 Tomato cytosol 37.07 26.85
CDY16033 Canola cytosol 13.61 26.67
Solyc06g007280.2.1 Tomato cytosol 23.13 26.67
VIT_14s0081g00110.t01 Wine grape cytosol 43.54 26.07
CDY28348 Canola mitochondrion, plastid 52.72 25.92
VIT_14s0030g02260.t01 Wine grape cytosol 38.78 25.73
CDY16026 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole 47.96 25.68
CDY33797 Canola mitochondrion 43.88 25.2
CDY33753 Canola mitochondrion 37.76 25.0
CDY34375 Canola mitochondrion 43.88 24.95
VIT_12s0028g02320.t01 Wine grape mitochondrion 40.48 24.95
CDY00489 Canola mitochondrion 48.98 24.57
CDY68929 Canola mitochondrion 50.68 24.55
CDY29251 Canola mitochondrion 41.84 24.26
CDY26593 Canola cytosol 50.0 24.14
CDY31272 Canola mitochondrion 46.6 24.12
CDY35831 Canola mitochondrion 41.5 23.69
CDY31271 Canola mitochondrion 38.78 23.46
CDY26565 Canola mitochondrion 44.9 23.2
CDX89301 Canola plastid 41.84 22.99
KRH70370 Soybean cytosol 41.5 22.43
VIT_14s0081g00270.t01 Wine grape plastid 43.54 22.07
KRH09256 Soybean mitochondrion 41.5 21.82
PGSC0003DMT400025067 Potato cytosol 34.35 21.22
CDY25522 Canola mitochondrion, plastid 31.97 21.03
PGSC0003DMT400025087 Potato endoplasmic reticulum 35.37 21.01
VIT_14s0081g00120.t01 Wine grape plastid 41.5 20.93
KRH49698 Soybean cytosol 40.14 20.7
PGSC0003DMT400008757 Potato cytosol 35.03 20.68
KRH38755 Soybean mitochondrion 41.5 20.54
VIT_14s0030g02280.t01 Wine grape plastid 38.78 20.32
PGSC0003DMT400053556 Potato mitochondrion 30.95 19.83
KRH75045 Soybean mitochondrion 40.14 19.77
KRH75048 Soybean mitochondrion 40.82 19.74
VIT_14s0081g00280.t01 Wine grape mitochondrion 42.52 19.56
CDY25519 Canola mitochondrion, plastid 42.52 19.56
KRH42744 Soybean mitochondrion 40.14 19.31
Solyc06g007300.1.1 Tomato extracellular 38.78 19.26
KRH75063 Soybean mitochondrion, plastid 39.46 19.21
PGSC0003DMT400025074 Potato cytosol 36.05 19.2
KRH58843 Soybean nucleus 39.12 18.82
PGSC0003DMT400008760 Potato mitochondrion 37.41 18.77
PGSC0003DMT400056665 Potato mitochondrion 37.41 18.68
Solyc06g007740.1.1 Tomato cytosol 37.07 18.47
PGSC0003DMT400052971 Potato mitochondrion 37.07 18.38
PGSC0003DMT400056663 Potato plastid 36.73 18.37
PGSC0003DMT400053185 Potato mitochondrion 36.39 18.14
CDY16032 Canola mitochondrion 23.81 17.16
CDY34680 Canola cytosol 51.02 16.45
PGSC0003DMT400053182 Potato cytosol 33.33 16.36
PGSC0003DMT400015298 Potato mitochondrion 32.65 15.74
PGSC0003DMT400015293 Potato mitochondrion 32.65 15.74
Solyc04g080120.1.1 Tomato extracellular 32.65 15.69
CDY34370 Canola cytosol 43.54 15.59
CDY34870 Canola mitochondrion 14.97 15.33
CDX81633 Canola extracellular, golgi, plasma membrane 46.94 15.18
CDX68680 Canola mitochondrion 21.09 13.42
CDY31277 Canola plastid 40.82 12.51
CDY16003 Canola cytosol, plastid 13.27 9.97
CDY26589 Canola cytosol 1.7 7.25
CDY15970 Canola cytosol 2.04 6.38
CDY21063 Canola plastid 0.0 0.0
Protein Annotations
Gene3D:1.25.40.10MapMan:35.1GO:A0A078FD42UniProt:A0A078FD42EnsemblPlants:CDY09968ProteinID:CDY09968
ProteinID:CDY09968.1GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0016020
GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00031740001InterPro:IPR002885InterPro:IPR011990PFAM:PF13041PFscan:PS51375
InterPro:Pentatricopeptide_repeatTIGRFAMs:TIGR00756TMHMM:TMhelixInterPro:TPR-like_helical_dom_sfUniParc:UPI0004EDEB65SEG:seg
Description
BnaC08g44830DBnaC08g44830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FD42]
Coordinates
chrLK032000:+:274534..275418
Molecular Weight (calculated)
33433.7 Da
IEP (calculated)
8.527
GRAVY (calculated)
0.214
Length
294 amino acids
Sequence
(BLAST)
001: MENVGVRPDV VSYNSLITGL FSAGVWGLSA RLLSDMMKKG IKPDVITFSA VIDAFVKEGR ILEAKEVYKE MIRRSVDPNI VTYNSLINGL CMNNRLDEAK
101: SAFRLMVRRG CSPNLVTYNT LINGFCKCMR VDDGMRIFFM MVRDGLVGDR VTYNTLFQGY CQVGRFNAAD EILCRMVSCG VRPDIFTYNI LLDCLCVERA
201: LVLLEDMEKS EMVIGIITYN IIIKGMCKAG MVEDAWCLFC SLGLKGVRPD VVTYMTMIVG FFRKGMRREA NGLYIRMIMD GFIMPIEWRY KRGH
Best Arabidopsis Sequence Match ( AT1G06580.1 )
(BLAST)
001: MRRSIVIVIA LTAKGFLHRH LLEKGNLVTA LSLRICNSRA FSGRSDYRER LRSGLHSIKF NDALTLFCDM AESHPLPSIV DFSRLLIAIA KLNKYEAVIS
101: LFRHLEMLGI SHDLYSFTTL IDCFCRCARL SLALSCLGKM MKLGFEPSIV TFGSLVNGFC HVNRFYEAMS LVDQIVGLGY EPNVVIYNTI IDSLCEKGQV
201: NTALDVLKHM KKMGIRPDVV TYNSLITRLF HSGTWGVSAR ILSDMMRMGI SPDVITFSAL IDVYGKEGQL LEAKKQYNEM IQRSVNPNIV TYNSLINGLC
301: IHGLLDEAKK VLNVLVSKGF FPNAVTYNTL INGYCKAKRV DDGMKILCVM SRDGVDGDTF TYNTLYQGYC QAGKFSAAEK VLGRMVSCGV HPDMYTFNIL
401: LDGLCDHGKI GKALVRLEDL QKSKTVVGII TYNIIIKGLC KADKVEDAWY LFCSLALKGV SPDVITYITM MIGLRRKRLW REAHELYRKM QKEDGLMPIK
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g06580 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHK2]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.