CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68929	Canola	mitochondrion	93.42	74.79
CDY31272	Canola	mitochondrion	72.63	62.15
CDY16032	Canola	mitochondrion	48.77	58.09
CDY33797	Canola	mitochondrion	59.67	56.64
CDY26565	Canola	mitochondrion	65.43	55.89
CDY00489	Canola	mitochondrion	67.28	55.8
CDY16003	Canola	cytosol, plastid	44.65	55.5
CDY26588	Canola	extracellular	36.21	54.32
CDY34870	Canola	mitochondrion	31.89	54.01
AT1G12620.1	Thale cress	cytosol, mitochondrion	68.31	53.46
CDY33753	Canola	mitochondrion	48.77	53.38
AT1G12300.1	Thale cress	mitochondrion	68.93	52.59
CDY16002	Canola	cytosol	33.54	52.41
AT3G22470.1	Thale cress	cytosol, mitochondrion	66.05	51.86
CDY16031	Canola	cytosol	33.13	51.77
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	58.23	51.55
AT1G12775.1	Thale cress	cytosol, mitochondrion	67.9	51.24
CDY51169	Canola	cytosol	44.44	51.06
CDY26593	Canola	cytosol	63.79	50.9
CDY16110	Canola	extracellular	41.98	49.76
CDY35831	Canola	mitochondrion	52.47	49.51
CDY26607	Canola	cytosol	46.09	49.02
CDY26589	Canola	cytosol	6.79	47.83
CDY46909	Canola	mitochondrion	28.4	47.26
CDY66358	Canola	mitochondrion	37.45	46.67
CDX71969	Canola	cytosol	34.98	42.93
CDY03257	Canola	cytosol	33.54	41.69
CDY46912	Canola	mitochondrion	41.77	41.09
CDY39810	Canola	cytosol	32.92	40.92
CDX69436	Canola	plastid	41.36	40.36
CDY08386	Canola	cytosol	36.63	40.0
CDY49646	Canola	mitochondrion	41.15	39.92
CDY25492	Canola	mitochondrion	40.33	39.92
CDY34375	Canola	mitochondrion	42.39	39.85
CDX67634	Canola	cytosol	33.95	39.01
CDY09968	Canola	cytosol	23.46	38.78
CDY06217	Canola	cytosol	23.25	38.57
CDY65983	Canola	mitochondrion	32.92	37.91
CDY34688	Canola	cytosol	28.19	37.85
CDY47835	Canola	mitochondrion	33.95	37.76
CDY34969	Canola	mitochondrion	38.89	37.35
CDY46394	Canola	mitochondrion	36.21	36.59
CDY48949	Canola	mitochondrion	35.8	36.17
CDY15970	Canola	cytosol	7.0	36.17
CDY25519	Canola	mitochondrion, plastid	46.3	35.21
Solyc06g007280.2.1	Tomato	cytosol	17.7	33.73
CDX81633	Canola	extracellular, golgi, plasma membrane	62.55	33.44
CDY29251	Canola	mitochondrion	34.77	33.33
CDY28348	Canola	mitochondrion, plastid	40.95	33.28
VIT_12s0028g02320.t01	Wine grape	mitochondrion	32.51	33.12
CDX89301	Canola	plastid	34.98	31.78
CDY25522	Canola	mitochondrion, plastid	28.81	31.32
VIT_14s0081g00270.t01	Wine grape	plastid	36.21	30.34
CDX68680	Canola	mitochondrion	28.4	29.87
VIT_14s0081g00120.t01	Wine grape	plastid	34.57	28.82
CDY66357	Canola	cytosol	22.43	28.76
VIT_14s0030g02280.t01	Wine grape	plastid	32.92	28.52
KRH70370	Soybean	cytosol	31.89	28.49
KRH49698	Soybean	cytosol	33.13	28.25
PGSC0003DMT400025074	Potato	cytosol	31.69	27.9
Solyc06g007300.1.1	Tomato	extracellular	33.74	27.7
KRH75045	Soybean	mitochondrion	33.95	27.64
KRH75063	Soybean	mitochondrion, plastid	34.16	27.48
PGSC0003DMT400053556	Potato	mitochondrion	25.93	27.45
PGSC0003DMT400008757	Potato	cytosol	27.98	27.31
KRH75048	Soybean	mitochondrion	34.16	27.3
VIT_14s0081g00110.t01	Wine grape	cytosol	27.37	27.09
CDY34370	Canola	cytosol	45.68	27.04
KRH42744	Soybean	mitochondrion	33.74	26.84
KRH58843	Soybean	nucleus	33.74	26.84
PGSC0003DMT400052977	Potato	cytosol	21.4	26.74
PGSC0003DMT400008760	Potato	mitochondrion	32.1	26.62
KRH09256	Soybean	mitochondrion	30.45	26.48
KRH38755	Soybean	mitochondrion	32.3	26.43
PGSC0003DMT400056665	Potato	mitochondrion	31.89	26.32
VIT_14s0081g00280.t01	Wine grape	mitochondrion	34.36	26.13
Solyc06g007740.1.1	Tomato	cytosol	31.69	26.1
PGSC0003DMT400056663	Potato	plastid	31.48	26.02
PGSC0003DMT400008759	Potato	cytosol	17.08	26.02
PGSC0003DMT400052971	Potato	mitochondrion	31.69	25.97
CDY31277	Canola	plastid	50.41	25.55
PGSC0003DMT400053185	Potato	mitochondrion	30.86	25.42
Solyc06g005220.2.1	Tomato	cytosol	20.78	24.88
PGSC0003DMT400025087	Potato	endoplasmic reticulum	24.9	24.44
PGSC0003DMT400053182	Potato	cytosol	29.42	23.87
PGSC0003DMT400015293	Potato	mitochondrion	29.84	23.77
PGSC0003DMT400015298	Potato	mitochondrion	29.84	23.77
Solyc04g080120.1.1	Tomato	extracellular	29.42	23.37
CDY16033	Canola	cytosol	7.2	23.33
PGSC0003DMT400025067	Potato	cytosol	22.22	22.69
Solyc06g007810.1.1	Tomato	cytosol	12.14	22.01
VIT_14s0030g02260.t01	Wine grape	cytosol	18.93	20.77
CDY34680	Canola	cytosol	29.42	15.68
CDX68679	Canola	cytosol	2.47	10.43
CDY21063	Canola	plastid	5.76	5.1

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078H0J1	EnsemblPlants:CDY31271	ProteinID:CDY31271	ProteinID:CDY31271.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00047431001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR44149	PANTHER:PTHR44149:SF3
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE8C0D	SEG:seg

Description

BnaC08g15660DBnaC08g15660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0J1]

Coordinates

chrLK032269:-:433398..435224

Molecular Weight (calculated)

54147.3 Da

IEP (calculated)

6.518

GRAVY (calculated)

0.021

Length

486 amino acids

Sequence
(BLAST)

001: MKRFVQTRLL QTGTLFLSER ASSTLSKGKK VSYKERLRSG VVDIKKEDAV ELFQSMIVSR PLPTIIHFSR LFSALAKTRQ YDLVLSLCKQ MELQGGTVHN
101: NYTLNIMINC FCRRRKLGFA FSAMAKMLKL GYEPSTVTFS TLVNGLCLEG RVSEAVALVD RMVEPNLVTL NTLVNGLCLN GKVSEAIALV DRMAVTYNMI
201: IDSLCKDGSV EDALNLFNEM ETKGIKANVI TYNTLISNFC NAGRWDEAAQ LLRDMISRGI TPNVITFSSL IDIFVKEGKH VEAKELYNEM GARGIDPDTI
301: TYNSLIYGLC MEKRLDDANQ MLDLMVSKGC SPDSVTYNII INGYCKAKRV DDGLKLFRKM SLREVVSYNT LVQGFCLSGK IEVAQELLQE MVSRGVDPDT
401: VTCNILVDGL CENGKLEKAL EIFEDLQKSE MELDIAHLGG SGVATSVELI EEMKRYGFAA DVSTMKMVMD MLSDGRLNKN FLGMLS

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.