Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026401.1-P | Field mustard | plastid | 99.63 | 99.63 |
| CDY29251 | Canola | mitochondrion | 92.34 | 97.44 |
| AT4G26800.2 | Thale cress | mitochondrion, plastid | 57.01 | 59.34 |
| CDY46909 | Canola | mitochondrion | 25.61 | 46.92 |
| CDX67634 | Canola | cytosol | 37.01 | 46.81 |
| CDY03257 | Canola | cytosol | 33.46 | 45.78 |
| CDY39810 | Canola | cytosol | 33.27 | 45.52 |
| CDY46394 | Canola | mitochondrion | 40.19 | 44.7 |
| CDY48949 | Canola | mitochondrion | 39.25 | 43.66 |
| CDY66358 | Canola | mitochondrion | 31.78 | 43.59 |
| CDY65983 | Canola | mitochondrion | 33.27 | 42.18 |
| CDY46912 | Canola | mitochondrion | 38.88 | 42.11 |
| CDY06217 | Canola | cytosol | 22.99 | 41.98 |
| CDY09968 | Canola | cytosol | 22.99 | 41.84 |
| CDY08386 | Canola | cytosol | 34.58 | 41.57 |
| CDY25492 | Canola | mitochondrion | 38.13 | 41.55 |
| CDX69436 | Canola | plastid | 38.5 | 41.37 |
| CDY49646 | Canola | mitochondrion | 38.69 | 41.32 |
| CDY34969 | Canola | mitochondrion | 37.94 | 40.12 |
| CDY47835 | Canola | mitochondrion | 30.84 | 37.76 |
| CDY16031 | Canola | cytosol | 21.12 | 36.33 |
| CDY16002 | Canola | cytosol | 20.56 | 35.37 |
| CDY33797 | Canola | mitochondrion | 33.83 | 35.35 |
| CDY34375 | Canola | mitochondrion | 33.83 | 35.01 |
| CDY31271 | Canola | mitochondrion | 31.78 | 34.98 |
| CDY28348 | Canola | mitochondrion, plastid | 39.07 | 34.95 |
| CDY16110 | Canola | extracellular | 26.54 | 34.63 |
| CDY51169 | Canola | cytosol | 27.1 | 34.28 |
| CDY68929 | Canola | mitochondrion | 38.5 | 33.94 |
| CDY31272 | Canola | mitochondrion | 35.7 | 33.63 |
| CDY16032 | Canola | mitochondrion | 25.61 | 33.58 |
| CDY26588 | Canola | extracellular | 20.19 | 33.33 |
| CDY34870 | Canola | mitochondrion | 17.57 | 32.75 |
| VIT_12s0028g02320.t01 | Wine grape | mitochondrion | 29.16 | 32.7 |
| CDY26593 | Canola | cytosol | 37.2 | 32.68 |
| CDY26565 | Canola | mitochondrion | 34.58 | 32.51 |
| CDY00489 | Canola | mitochondrion | 35.51 | 32.42 |
| CDY16026 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole | 32.9 | 32.06 |
| CDY34688 | Canola | cytosol | 21.31 | 31.49 |
| KRH70370 | Soybean | cytosol | 31.78 | 31.25 |
| CDY66357 | Canola | cytosol | 22.06 | 31.13 |
| CDX71969 | Canola | cytosol | 22.8 | 30.81 |
| KRH49698 | Soybean | cytosol | 31.96 | 30.0 |
| VIT_14s0081g00270.t01 | Wine grape | plastid | 32.34 | 29.83 |
| CDY26607 | Canola | cytosol | 25.42 | 29.76 |
| CDY25522 | Canola | mitochondrion, plastid | 24.67 | 29.53 |
| CDY25519 | Canola | mitochondrion, plastid | 35.14 | 29.42 |
| KRH75045 | Soybean | mitochondrion | 32.71 | 29.31 |
| CDY33753 | Canola | mitochondrion | 24.3 | 29.28 |
| KRH09256 | Soybean | mitochondrion | 30.47 | 29.16 |
| CDY35831 | Canola | mitochondrion | 28.04 | 29.13 |
| PGSC0003DMT400008759 | Potato | cytosol | 17.2 | 28.84 |
| Solyc06g005220.2.1 | Tomato | cytosol | 21.87 | 28.82 |
| KRH75063 | Soybean | mitochondrion, plastid | 32.34 | 28.64 |
| KRH75048 | Soybean | mitochondrion | 32.52 | 28.62 |
| KRH42744 | Soybean | mitochondrion | 32.52 | 28.48 |
| KRH58843 | Soybean | nucleus | 32.52 | 28.48 |
| VIT_14s0081g00120.t01 | Wine grape | plastid | 31.03 | 28.47 |
| PGSC0003DMT400052977 | Potato | cytosol | 20.37 | 28.02 |
| VIT_14s0081g00110.t01 | Wine grape | cytosol | 25.23 | 27.49 |
| KRH38755 | Soybean | mitochondrion | 30.28 | 27.27 |
| Solyc06g007810.1.1 | Tomato | cytosol | 13.64 | 27.24 |
| PGSC0003DMT400008757 | Potato | cytosol | 25.23 | 27.11 |
| VIT_14s0030g02280.t01 | Wine grape | plastid | 28.22 | 26.92 |
| CDY16003 | Canola | cytosol, plastid | 19.25 | 26.34 |
| Solyc06g007280.2.1 | Tomato | cytosol | 12.34 | 25.88 |
| PGSC0003DMT400008760 | Potato | mitochondrion | 28.22 | 25.77 |
| PGSC0003DMT400025067 | Potato | cytosol | 22.8 | 25.63 |
| PGSC0003DMT400025074 | Potato | cytosol | 26.36 | 25.54 |
| VIT_14s0081g00280.t01 | Wine grape | mitochondrion | 30.47 | 25.51 |
| PGSC0003DMT400025087 | Potato | endoplasmic reticulum | 23.55 | 25.45 |
| CDY16033 | Canola | cytosol | 7.1 | 25.33 |
| PGSC0003DMT400053556 | Potato | mitochondrion | 21.68 | 25.27 |
| CDX68679 | Canola | cytosol | 5.42 | 25.22 |
| Solyc06g007300.1.1 | Tomato | extracellular | 27.85 | 25.17 |
| PGSC0003DMT400056665 | Potato | mitochondrion | 27.48 | 24.96 |
| PGSC0003DMT400052971 | Potato | mitochondrion | 27.48 | 24.79 |
| Solyc06g007740.1.1 | Tomato | cytosol | 27.29 | 24.75 |
| PGSC0003DMT400056663 | Potato | plastid | 27.1 | 24.66 |
| CDX68680 | Canola | mitochondrion | 20.93 | 24.24 |
| VIT_14s0030g02260.t01 | Wine grape | cytosol | 19.81 | 23.93 |
| Solyc04g080120.1.1 | Tomato | extracellular | 26.73 | 23.37 |
| CDY34370 | Canola | cytosol | 35.7 | 23.26 |
| PGSC0003DMT400015298 | Potato | mitochondrion | 26.36 | 23.11 |
| PGSC0003DMT400015293 | Potato | mitochondrion | 26.36 | 23.11 |
| PGSC0003DMT400053185 | Potato | mitochondrion | 25.05 | 22.71 |
| PGSC0003DMT400053182 | Potato | cytosol | 25.05 | 22.37 |
| CDX81633 | Canola | extracellular, golgi, plasma membrane | 36.64 | 21.56 |
| CDY34680 | Canola | cytosol | 27.48 | 16.12 |
| CDY31277 | Canola | plastid | 28.22 | 15.75 |
| CDY26589 | Canola | cytosol | 1.87 | 14.49 |
| CDY15970 | Canola | cytosol | 1.68 | 9.57 |
| CDY21063 | Canola | plastid | 2.8 | 2.73 |
Protein Annotations
| EnsemblPlants:CDX89301 | EnsemblPlantsGene:GSBRNA2T00149515001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR44149 | PANTHER:PTHR44149:SF3 |
| PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 | ProteinID:CDX89301 | ProteinID:CDX89301.1 | SUPFAM:SSF48452 |
| TIGRFAMs:TIGR00756 | UniParc:UPI0004EE73FF | MapMan:35.1 | : | : | : |
Description
BnaA01g15920D
Coordinates
chrLK031858:-:780220..782335
Molecular Weight (calculated)
60279.6 Da
IEP (calculated)
8.837
GRAVY (calculated)
-0.063
Length
535 amino acids
Sequence
(BLAST)
(BLAST)
001: MRWPIPTAIS STAKALLHRH FPKNGIIAPS FRLCKFRAFS SAVDYREILR SGLHGIKPDE AVDLFGYMAE SRPLPNIIEF NKVLTAIAKM KSYETVIRLW
101: SIVEDDEGVE ISPDIYTCNI LVKCFIRCCC HPCVAMSFLG KMMKLGVEPD VVTGSLLVNG FCQINRFDEA FYVAEQMKKM GVTLNVVVYT ILIDGLCRNR
201: FLNEAINVFG LMEKEGVAPN VFTYTSLISG LCNACKLSEA SHVLRQMISR KIDPNVVTFT TLINAYVKAG KFSEFWELYQ EMIKMSIDPN VVTYTSVING
301: LCMHNHVDRA KKAFEDMQRN GCAPNVLTYS TLANGLFKSN RFNEGIELLK EMSDSGVAEN TVSRNTLIQG CIQAGKISSA QEIFERMPSD GLPPNIRSYN
401: IVLAGLFVYG KVKKALSTYE LMQKTRNDLD IVTYTIMIHW MCKDGKADEA FKLFFSLSSK GVEPDDKAYT AMISGLKKNG MLARAHALTR AYQKYKRNRE
501: SFQSAKGCQE LRYLADRIEA FHKPTVLHQN ISKGY
101: SIVEDDEGVE ISPDIYTCNI LVKCFIRCCC HPCVAMSFLG KMMKLGVEPD VVTGSLLVNG FCQINRFDEA FYVAEQMKKM GVTLNVVVYT ILIDGLCRNR
201: FLNEAINVFG LMEKEGVAPN VFTYTSLISG LCNACKLSEA SHVLRQMISR KIDPNVVTFT TLINAYVKAG KFSEFWELYQ EMIKMSIDPN VVTYTSVING
301: LCMHNHVDRA KKAFEDMQRN GCAPNVLTYS TLANGLFKSN RFNEGIELLK EMSDSGVAEN TVSRNTLIQG CIQAGKISSA QEIFERMPSD GLPPNIRSYN
401: IVLAGLFVYG KVKKALSTYE LMQKTRNDLD IVTYTIMIHW MCKDGKADEA FKLFFSLSSK GVEPDDKAYT AMISGLKKNG MLARAHALTR AYQKYKRNRE
501: SFQSAKGCQE LRYLADRIEA FHKPTVLHQN ISKGY
001: MRWSIATAIA STAKGFLHLH HHFLKNSNPG IVLSPSLRFR FWVRAFSGTT IDYREVLRSG LHNIKFDDAF HLFVLMAYSY PLPSIVEFNK VLTAIAKMQM
101: YDVVINLWKR IENAEGIEIS PDLYTCNILV NCFCRCFQPS SALSYLGKMM KLGIEPDIVT ASSLVNGFCL SNSIKDAVYV AGQMEKMGIK RDVVVDTILI
201: DTLCKNRLVV PALEVLKRMK DRGISPNVVT YSSLITGLCK SGRLADAERR LHEMDSKKIN PNVITFSALI DAYAKRGKLS KVDSVYKMMI QMSIDPNVFT
301: YSSLIYGLCM HNRVDEAIKM LDLMISKGCT PNVVTYSTLA NGFFKSSRVD DGIKLLDDMP QRGVAANTVS CNTLIKGYFQ AGKIDLALGV FGYMTSNGLI
401: PNIRSYNIVL AGLFANGEVE KALSRFEHMQ KTRNDLDIIT YTIMIHGMCK ACMVKEAYDL FYKLKFKRVE PDFKAYTIMI AELNRAGMRT EADALNRFYQ
501: KHVRQNESAP AEVS
101: YDVVINLWKR IENAEGIEIS PDLYTCNILV NCFCRCFQPS SALSYLGKMM KLGIEPDIVT ASSLVNGFCL SNSIKDAVYV AGQMEKMGIK RDVVVDTILI
201: DTLCKNRLVV PALEVLKRMK DRGISPNVVT YSSLITGLCK SGRLADAERR LHEMDSKKIN PNVITFSALI DAYAKRGKLS KVDSVYKMMI QMSIDPNVFT
301: YSSLIYGLCM HNRVDEAIKM LDLMISKGCT PNVVTYSTLA NGFFKSSRVD DGIKLLDDMP QRGVAANTVS CNTLIKGYFQ AGKIDLALGV FGYMTSNGLI
401: PNIRSYNIVL AGLFANGEVE KALSRFEHMQ KTRNDLDIIT YTIMIHGMCK ACMVKEAYDL FYKLKFKRVE PDFKAYTIMI AELNRAGMRT EADALNRFYQ
501: KHVRQNESAP AEVS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At4g26800 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ20]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.