CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65983	Canola	mitochondrion	80.45	93.6
CDY39810	Canola	cytosol	45.01	56.52
CDY09968	Canola	cytosol	33.81	56.46
CDY06217	Canola	cytosol	33.6	56.31
CDY03257	Canola	cytosol	44.81	56.27
CDY08386	Canola	cytosol	49.69	54.83
CDX67634	Canola	cytosol	46.03	53.43
CDY47835	Canola	mitochondrion	44.81	50.34
CDY46909	Canola	mitochondrion	29.74	50.0
CDY48949	Canola	mitochondrion	48.88	49.9
CDY46394	Canola	mitochondrion	48.68	49.69
CDX69436	Canola	plastid	50.31	49.6
CDY49646	Canola	mitochondrion	49.9	48.9
CDY46912	Canola	mitochondrion	48.27	47.98
CDY34969	Canola	mitochondrion	49.29	47.83
CDY66358	Canola	mitochondrion	37.88	47.69
CDY28348	Canola	mitochondrion, plastid	49.49	40.64
CDY31271	Canola	mitochondrion	39.92	40.33
CDY29251	Canola	mitochondrion	41.34	40.04
CDY31272	Canola	mitochondrion	45.42	39.26
CDY51169	Canola	cytosol	33.6	39.01
CDY16032	Canola	mitochondrion	32.38	38.97
CDY34375	Canola	mitochondrion	40.73	38.68
CDY68929	Canola	mitochondrion	47.25	38.22
CDX89301	Canola	plastid	41.55	38.13
CDY26588	Canola	extracellular	25.05	37.96
CDY16031	Canola	cytosol	24.03	37.94
CDY33797	Canola	mitochondrion	39.51	37.89
CDY16002	Canola	cytosol	23.83	37.62
CDY34688	Canola	cytosol	27.49	37.29
CDY26565	Canola	mitochondrion	42.97	37.08
VIT_12s0028g02320.t01	Wine grape	mitochondrion	35.85	36.9
CDY00489	Canola	mitochondrion	43.58	36.52
CDY16110	Canola	extracellular	30.14	36.1
CDY26593	Canola	cytosol	44.4	35.8
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	39.71	35.52
CDY25522	Canola	mitochondrion, plastid	31.77	34.9
CDY66357	Canola	cytosol	26.88	34.83
CDY26607	Canola	cytosol	31.77	34.14
CDY34870	Canola	mitochondrion	19.76	33.8
CDY33753	Canola	mitochondrion	30.14	33.33
CDX71969	Canola	cytosol	26.68	33.08
VIT_14s0081g00270.t01	Wine grape	plastid	38.9	32.93
Solyc06g007280.2.1	Tomato	cytosol	16.9	32.55
CDY35831	Canola	mitochondrion	34.01	32.43
CDY25519	Canola	mitochondrion, plastid	41.96	32.24
PGSC0003DMT400052977	Potato	cytosol	24.85	31.36
KRH70370	Soybean	cytosol	34.62	31.25
VIT_14s0081g00110.t01	Wine grape	cytosol	30.96	30.96
PGSC0003DMT400025074	Potato	cytosol	34.62	30.8
KRH49698	Soybean	cytosol	35.64	30.7
Solyc06g005220.2.1	Tomato	cytosol	25.25	30.54
VIT_14s0081g00120.t01	Wine grape	plastid	36.25	30.53
PGSC0003DMT400008759	Potato	cytosol	19.76	30.41
VIT_14s0030g02280.t01	Wine grape	plastid	34.42	30.12
KRH09256	Soybean	mitochondrion	34.22	30.05
CDY16003	Canola	cytosol, plastid	23.42	29.41
CDY16033	Canola	cytosol	8.96	29.33
PGSC0003DMT400008757	Potato	cytosol	29.74	29.32
Solyc06g007300.1.1	Tomato	extracellular	35.03	29.05
KRH75045	Soybean	mitochondrion	35.03	28.81
PGSC0003DMT400053556	Potato	mitochondrion	26.88	28.76
PGSC0003DMT400008760	Potato	mitochondrion	34.01	28.5
Solyc06g007740.1.1	Tomato	cytosol	33.81	28.14
KRH75048	Soybean	mitochondrion	34.83	28.12
KRH38755	Soybean	mitochondrion	34.01	28.11
VIT_14s0081g00280.t01	Wine grape	mitochondrion	36.46	28.01
KRH75063	Soybean	mitochondrion, plastid	34.42	27.98
PGSC0003DMT400025087	Potato	endoplasmic reticulum	28.11	27.88
PGSC0003DMT400052971	Potato	mitochondrion	33.6	27.82
KRH58843	Soybean	nucleus	34.62	27.82
PGSC0003DMT400056665	Potato	mitochondrion	32.99	27.5
KRH42744	Soybean	mitochondrion	34.01	27.33
PGSC0003DMT400053185	Potato	mitochondrion	32.79	27.29
PGSC0003DMT400056663	Potato	plastid	32.59	27.21
CDX68679	Canola	cytosol	6.31	26.96
PGSC0003DMT400025067	Potato	cytosol	26.07	26.89
Solyc06g007810.1.1	Tomato	cytosol	14.46	26.49
CDY34370	Canola	cytosol	43.18	25.82
PGSC0003DMT400053182	Potato	cytosol	30.75	25.21
VIT_14s0030g02260.t01	Wine grape	cytosol	22.61	25.06
PGSC0003DMT400015293	Potato	mitochondrion	30.55	24.59
PGSC0003DMT400015298	Potato	mitochondrion	30.55	24.59
CDX68680	Canola	mitochondrion	23.01	24.46
Solyc04g080120.1.1	Tomato	extracellular	30.35	24.35
CDX81633	Canola	extracellular, golgi, plasma membrane	41.34	22.33
CDY34680	Canola	cytosol	34.22	18.42
CDY31277	Canola	plastid	33.81	17.31
CDY26589	Canola	cytosol	1.02	7.25
CDY15970	Canola	cytosol	1.02	5.32
CDY21063	Canola	plastid	2.44	2.19

Protein Annotations

EnsemblPlants:CDY25492	EnsemblPlantsGene:GSBRNA2T00032724001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF3
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:CDY25492	ProteinID:CDY25492.1
TIGRFAMs:TIGR00756	UniParc:UPI0004EF475D	UniProt:A0A078GK18	MapMan:35.1	:	:

Description

BnaC09g11170DBnaC09g11170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GK18]

Coordinates

chrLK032176:+:60609..62084

Molecular Weight (calculated)

55188.0 Da

IEP (calculated)

8.857

GRAVY (calculated)

0.062

Length

491 amino acids

Sequence
(BLAST)

001: MVIRSLSTAI ASTAKRFVHQ SGSCCWGRRA LSCATADYRD TLRNELHDLK LDDAIGLFNV MVRSRPLPST FDFSRVLTAI ARMKKFDIVI TLCQEMERLG
101: IPHNIYTCNI LINSFTRCSQ SHLSLALSFL AKMVKLGYAP DIVTLSSLLN GFKGVSDAMS FLNRIEGMGY KPNVVIYNTL IDSHCKGGRV SDALQVFDVM
201: KGKGVAPSVV TYNAMIRGLC KSGRWSEADG LLSDMVEKRI QPNVVTFSVL IDACVKEGNV LEAKELYKEM ISRSVVPDIR VYNSLINGLC IHGRLDEARK
301: MLDFMVSKGC VPNVVTYNTL IKGFCKSKRA HDGMKLFCQM NHKGVRGDAF TYNTLIHGYC QVGKFSVAQK VMKRMSESCV PRDVITFNIL LDCLCGIGKI
401: EKALTIFRDM EKNEMEFDIF TYNIIIHGMY KSGKMEDAME LFCSLSLKGV KPDVVTYRTM ISGLCRKGLR HEADVLFRQM TEDEFLLLYN L

Best Arabidopsis Sequence Match ( AT1G64580.1 )
(BLAST)

001: MQRLIPIAFS SSVKGFVRRH YLLLERGNNP ETSLSRSFSG ASHHHHYRER LRNELHCIKF DDAFSLFCEM LQSRPIPSIV DFTRVLTVIA KMNKFDIVIY
101: LYHKMENLGI SHDLYSFTIL IHCFCRCSRL SLALALLGKM MKLGFRPSIV TLGSLLNGFC QGNRFQEAVS LVDSMDGFGF VPNVVIYNTV INGLCKNRDL
201: NNALEVFYCM EKKGIRADAV TYNTLISGLS NSGRWTDAAR LLRDMVKRKI DPNVIFFTAL IDTFVKEGNL LEARNLYKEM IRRSVVPNVF TYNSLINGFC
301: IHGCLGDAKY MFDLMVSKGC FPDVVTYNTL ITGFCKSKRV EDGMKLFCEM TYQGLVGDAF TYNTLIHGYC QAGKLNVAQK VFNRMVDCGV SPDIVTYNIL
401: LDCLCNNGKI EKALVMVEDL QKSEMDVDII TYNIIIQGLC RTDKLKEAWC LFRSLTRKGV KPDAIAYITM ISGLCRKGLQ READKLCRRM KEDGFMPSER
501: IYDETLRDHY TSLSAELIKA AHE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g64580 [Source:UniProtKB/Swiss-Prot;Acc:Q0WKZ3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.