CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69436	Canola	plastid	93.41	93.98
Bra006187.1-P	Field mustard	plastid	48.7	83.85
AT5G16640.1	Thale cress	mitochondrion	73.85	73.41
CDY09968	Canola	cytosol	32.53	55.44
CDY39810	Canola	cytosol	42.91	54.99
CDY06217	Canola	cytosol	31.94	54.61
CDY03257	Canola	cytosol	42.52	54.48
CDX67634	Canola	cytosol	45.11	53.43
CDY46909	Canola	mitochondrion	31.14	53.42
CDY08386	Canola	cytosol	47.31	53.26
CDY65983	Canola	mitochondrion	43.11	51.18
CDY66358	Canola	mitochondrion	39.72	51.03
CDY46394	Canola	mitochondrion	48.1	50.1
CDY25492	Canola	mitochondrion	48.9	49.9
CDY48949	Canola	mitochondrion	47.9	49.9
CDY34969	Canola	mitochondrion	49.9	49.41
CDY46912	Canola	mitochondrion	48.7	49.39
CDY47835	Canola	mitochondrion	41.72	47.83
CDY28348	Canola	mitochondrion, plastid	51.3	42.98
CDY16031	Canola	cytosol	25.55	41.16
CDY31271	Canola	mitochondrion	39.92	41.15
CDY29251	Canola	mitochondrion	41.12	40.63
CDY33797	Canola	mitochondrion	40.52	39.65
CDY34375	Canola	mitochondrion	40.52	39.27
CDY31272	Canola	mitochondrion	44.51	39.26
CDY51169	Canola	cytosol	33.13	39.24
CDX89301	Canola	plastid	41.32	38.69
CDY16002	Canola	cytosol	23.95	38.59
CDY68929	Canola	mitochondrion	46.71	38.55
CDY26588	Canola	extracellular	24.35	37.65
CDY26593	Canola	cytosol	45.51	37.44
CDY16110	Canola	extracellular	30.54	37.32
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	40.72	37.16
VIT_12s0028g02320.t01	Wine grape	mitochondrion	34.93	36.69
CDY00489	Canola	mitochondrion	42.71	36.52
CDY33753	Canola	mitochondrion	32.34	36.49
CDY16032	Canola	mitochondrion	29.34	36.03
CDY34688	Canola	cytosol	25.95	35.91
CDY26565	Canola	mitochondrion	40.32	35.5
CDY26607	Canola	cytosol	32.34	35.45
CDY25522	Canola	mitochondrion, plastid	31.14	34.9
CDY66357	Canola	cytosol	26.15	34.56
CDY35831	Canola	mitochondrion	34.93	33.98
CDX71969	Canola	cytosol	26.75	33.84
VIT_14s0081g00270.t01	Wine grape	plastid	37.72	32.59
Solyc06g007280.2.1	Tomato	cytosol	16.57	32.55
CDY25519	Canola	mitochondrion, plastid	40.52	31.77
VIT_14s0030g02280.t01	Wine grape	plastid	35.53	31.73
CDY34870	Canola	mitochondrion	18.16	31.71
VIT_14s0081g00120.t01	Wine grape	plastid	36.33	31.22
KRH70370	Soybean	cytosol	33.73	31.07
PGSC0003DMT400052977	Potato	cytosol	23.95	30.85
KRH09256	Soybean	mitochondrion	34.33	30.77
PGSC0003DMT400008759	Potato	cytosol	19.56	30.72
VIT_14s0081g00110.t01	Wine grape	cytosol	29.74	30.35
KRH38755	Soybean	mitochondrion	35.73	30.13
VIT_14s0081g00280.t01	Wine grape	mitochondrion	38.12	29.89
KRH49698	Soybean	cytosol	33.93	29.82
KRH58843	Soybean	nucleus	36.33	29.79
CDY16003	Canola	cytosol, plastid	23.15	29.67
KRH42744	Soybean	mitochondrion	36.13	29.62
Solyc06g005220.2.1	Tomato	cytosol	23.75	29.31
KRH75063	Soybean	mitochondrion, plastid	35.33	29.3
KRH75045	Soybean	mitochondrion	34.73	29.15
PGSC0003DMT400008757	Potato	cytosol	28.74	28.92
CDY16033	Canola	cytosol	8.58	28.67
PGSC0003DMT400025087	Potato	endoplasmic reticulum	28.14	28.48
Solyc06g007300.1.1	Tomato	extracellular	33.33	28.21
KRH75048	Soybean	mitochondrion	33.93	27.96
CDX68679	Canola	cytosol	6.39	27.83
PGSC0003DMT400008760	Potato	mitochondrion	32.34	27.65
PGSC0003DMT400052971	Potato	mitochondrion	32.34	27.32
PGSC0003DMT400025074	Potato	cytosol	29.94	27.17
Solyc06g007740.1.1	Tomato	cytosol	31.94	27.12
PGSC0003DMT400056663	Potato	plastid	31.74	27.04
PGSC0003DMT400056665	Potato	mitochondrion	31.74	26.99
Solyc06g007810.1.1	Tomato	cytosol	14.37	26.87
PGSC0003DMT400025067	Potato	cytosol	25.35	26.68
PGSC0003DMT400053185	Potato	mitochondrion	31.14	26.44
PGSC0003DMT400053556	Potato	mitochondrion	24.15	26.36
CDX68680	Canola	mitochondrion	24.15	26.19
PGSC0003DMT400053182	Potato	cytosol	30.14	25.21
CDY34370	Canola	cytosol	40.72	24.85
PGSC0003DMT400015298	Potato	mitochondrion	29.94	24.59
PGSC0003DMT400015293	Potato	mitochondrion	29.94	24.59
VIT_14s0030g02260.t01	Wine grape	cytosol	21.56	24.38
Solyc04g080120.1.1	Tomato	extracellular	29.34	24.02
CDX81633	Canola	extracellular, golgi, plasma membrane	43.51	23.98
CDY34680	Canola	cytosol	33.93	18.64
CDY31277	Canola	plastid	35.33	18.46
CDY26589	Canola	cytosol	1.2	8.7
CDY15970	Canola	cytosol	1.2	6.38
CDY21063	Canola	plastid	2.79	2.55

Protein Annotations

EnsemblPlants:CDY49646	EnsemblPlantsGene:GSBRNA2T00093514001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF1
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY49646	ProteinID:CDY49646.1	TIGRFAMs:TIGR00756
UniParc:UPI0004EDB2CA	UniProt:A0A078II44	MapMan:35.1	:	:	:

Description

BnaC09g41240DBnaC09g41240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078II44]

Coordinates

chrLK032850:-:17322..18960

Molecular Weight (calculated)

56338.0 Da

IEP (calculated)

8.147

GRAVY (calculated)

0.011

Length

501 amino acids

Sequence
(BLAST)

001: MRRSISSKAK SFLHRNLPEK ANPPSYAISD SPRRAHTSSS NNNNTDYKET LRSNKLRHMN LDDSLELFFH MIQRHPFPSI ADFSRLLTAI SKLNSHDVVI
101: HLWEQMEILG VAHNLYTCNI LVNCLCRCSE LSQALSFLAK MIKLGHSPSV VTFGSLIGGF CRGGRVSEAL RLFNRMVEIG VRPNVVICNI VIDGLCKSRH
201: VDKALDFFNQ MEVVRPDVIT YNSLISGLCN ASRWGEALRM VRCMSESGLS PDVFTFNALI DACVKRGSLS EAEELYEEMV RRSLEPDVVT YSLLIGGLCM
301: CSRLDEAERM FEYMVSRRCF PDVVTYSILI NGFCKSRKVD YGMKLFCEMS RRGVVRNVVT YTILIQGYCL AGKVNVAEEI FKRMAGSGVS PNIVTCNVLL
401: HGLCDNGKVE KALVMLEDME KSGMEGDIVT YNIIIRGMCK AGEVADAWGL YCSLNLKGLV PDIWTYTTMM LGLYKKGLRR EADALFRKMK EDGILPNECC
501: V

Best Arabidopsis Sequence Match ( AT5G16640.1 )
(BLAST)

001: MRRSISSKAK SFLHRNLLYS GNSGTSPSSS FSICGFCFSR RAYSNGSDYR EMLRNGIRFM KLDDSLDLFF HMVQCRPLPS IADFSRLLSA ISKMKKYDVV
101: IYLWEQMQML GIPHNLCTCN ILLNCFCRCS QLSLALSFLG KMIKLGHEPS IVTFGSLLNG FCRGDRVYDA LYMFDQMVGM GYKPNVVIYN TIIDGLCKSK
201: QVDNALDLLN RMEKDGIGPD VVTYNSLISG LCSSGRWSDA TRMVSCMTKR EIYPDVFTFN ALIDACVKEG RVSEAEEFYE EMIRRSLDPD IVTYSLLIYG
301: LCMYSRLDEA EEMFGFMVSK GCFPDVVTYS ILINGYCKSK KVEHGMKLFC EMSQRGVVRN TVTYTILIQG YCRAGKLNVA EEIFRRMVFC GVHPNIITYN
401: VLLHGLCDNG KIEKALVILA DMQKNGMDAD IVTYNIIIRG MCKAGEVADA WDIYCSLNCQ GLMPDIWTYT TMMLGLYKKG LRREADALFR KMKEDGILPN
501: ECYV

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g16640, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FMD3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.