CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16032	Canola	mitochondrion	31.17	35.29
CDY34870	Canola	mitochondrion	21.0	33.8
Solyc06g007280.2.1	Tomato	cytosol	18.4	33.33
CDY16003	Canola	cytosol, plastid	27.71	32.74
CDY26588	Canola	extracellular	21.43	30.56
CDY16110	Canola	extracellular	25.32	28.54
CDY31271	Canola	mitochondrion	29.87	28.4
CDY00489	Canola	mitochondrion	35.93	28.33
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	33.55	28.23
CDY26607	Canola	cytosol	27.71	28.01
CDY68929	Canola	mitochondrion	36.36	27.68
CDY26593	Canola	cytosol	36.36	27.59
CDY31272	Canola	mitochondrion	33.55	27.29
CDY26565	Canola	mitochondrion	33.33	27.07
CDY33797	Canola	mitochondrion	29.44	26.56
CDY39810	Canola	cytosol	22.08	26.09
CDY16031	Canola	cytosol	17.53	26.05
CDY03257	Canola	cytosol	21.86	25.83
CDY35831	Canola	mitochondrion	28.79	25.83
CDX71969	Canola	cytosol	21.86	25.51
CDX67634	Canola	cytosol	23.16	25.3
CDY08386	Canola	cytosol	24.24	25.17
CDY33753	Canola	mitochondrion	24.03	25.0
CDX69436	Canola	plastid	26.84	24.9
CDY16002	Canola	cytosol	16.67	24.76
CDY46912	Canola	mitochondrion	26.41	24.7
VIT_12s0028g02320.t01	Wine grape	mitochondrion	25.11	24.32
CDY49646	Canola	mitochondrion	26.19	24.15
CDY66358	Canola	mitochondrion	20.35	24.1
CDY34969	Canola	mitochondrion	26.19	23.91
CDY46394	Canola	mitochondrion	24.89	23.91
CDY51169	Canola	cytosol	21.86	23.88
CDY48949	Canola	mitochondrion	24.68	23.7
CDY46909	Canola	mitochondrion	14.94	23.63
CDY25522	Canola	mitochondrion, plastid	22.73	23.49
PGSC0003DMT400008757	Potato	cytosol	25.11	23.29
CDY25492	Canola	mitochondrion	24.46	23.01
CDY65983	Canola	mitochondrion	21.0	22.99
CDY25519	Canola	mitochondrion, plastid	31.39	22.69
Solyc06g005220.2.1	Tomato	cytosol	19.91	22.66
CDY34375	Canola	mitochondrion	25.32	22.63
CDY47835	Canola	mitochondrion	21.21	22.43
VIT_14s0081g00270.t01	Wine grape	plastid	28.14	22.41
PGSC0003DMT400025074	Potato	cytosol	26.62	22.28
VIT_14s0030g02280.t01	Wine grape	plastid	27.06	22.28
CDY29251	Canola	mitochondrion	24.03	21.89
CDY06217	Canola	cytosol	13.85	21.84
PGSC0003DMT400025087	Potato	endoplasmic reticulum	23.16	21.62
KRH49698	Soybean	cytosol	26.62	21.58
KRH70370	Soybean	cytosol	25.32	21.51
CDY28348	Canola	mitochondrion, plastid	27.71	21.4
PGSC0003DMT400056665	Potato	mitochondrion	27.27	21.39
PGSC0003DMT400053556	Potato	mitochondrion	21.21	21.35
PGSC0003DMT400008760	Potato	mitochondrion	27.06	21.33
CDY09968	Canola	cytosol	13.42	21.09
PGSC0003DMT400053185	Potato	mitochondrion	26.84	21.02
Solyc06g007740.1.1	Tomato	cytosol	26.84	21.02
Solyc06g007300.1.1	Tomato	extracellular	26.84	20.95
CDX89301	Canola	plastid	24.24	20.93
KRH38755	Soybean	mitochondrion	26.84	20.88
VIT_14s0081g00120.t01	Wine grape	plastid	26.19	20.75
Solyc04g080120.1.1	Tomato	extracellular	27.49	20.75
PGSC0003DMT400056663	Potato	plastid	26.41	20.75
PGSC0003DMT400052971	Potato	mitochondrion	26.62	20.74
PGSC0003DMT400025067	Potato	cytosol	21.21	20.59
PGSC0003DMT400015293	Potato	mitochondrion	26.84	20.33
PGSC0003DMT400015298	Potato	mitochondrion	26.84	20.33
KRH58843	Soybean	nucleus	26.84	20.29
KRH75045	Soybean	mitochondrion	26.19	20.27
KRH75063	Soybean	mitochondrion, plastid	26.41	20.2
KRH75048	Soybean	mitochondrion	26.41	20.07
VIT_14s0081g00280.t01	Wine grape	mitochondrion	27.49	19.87
PGSC0003DMT400053182	Potato	cytosol	25.76	19.87
PGSC0003DMT400052977	Potato	cytosol	16.67	19.79
VIT_14s0081g00110.t01	Wine grape	cytosol	21.0	19.76
KRH42744	Soybean	mitochondrion	25.97	19.64
CDY34688	Canola	cytosol	15.37	19.61
KRH09256	Soybean	mitochondrion	23.38	19.32
CDX81633	Canola	extracellular, golgi, plasma membrane	34.85	17.71
PGSC0003DMT400008759	Potato	cytosol	12.12	17.55
CDY34370	Canola	cytosol	30.74	17.3
Solyc06g007810.1.1	Tomato	cytosol	7.79	13.43
CDY66357	Canola	cytosol	10.82	13.19
VIT_14s0030g02260.t01	Wine grape	cytosol	9.96	10.38
CDY31277	Canola	plastid	20.35	9.8
CDX68679	Canola	cytosol	2.38	9.57
CDY34680	Canola	cytosol	14.07	7.13
CDY16033	Canola	cytosol	1.08	3.33
CDY21063	Canola	plastid	2.16	1.82
CDY26589	Canola	cytosol	0.22	1.45
CDY15970	Canola	cytosol	0.22	1.06

Protein Annotations

EnsemblPlants:CDX68680	EnsemblPlantsGene:GSBRNA2T00130357001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1649
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX68680	ProteinID:CDX68680.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EEA10B	MapMan:35.1	:	:	:

Description

BnaC01g07730D

Coordinates

chrLK031789:-:739347..740735

Molecular Weight (calculated)

50967.7 Da

IEP (calculated)

7.176

GRAVY (calculated)

0.042

Length

462 amino acids

Sequence
(BLAST)

001: MLIGGKLMHL GAGALRSTAT NRRLMSSHTT SESRKIWFLV RDVQKLNHDD AIAMIRKTVH SHAAAVPRSI DLNRLLGAIA GTKRYDLVLA MYREMESLGV
101: SPNVYSLNVV IGGLCSSGEA ELALATLGKM IRIGVKPDTV TLNTLIKSYC SEGRVDEAKK LAENLSKFGI ESNLITLNTL VHGLCLQGDV HGAVKAVEDA
201: LEDGVETDGF TYGPILNRVC KAGNSTLALK LLRYMEERNV DVNQVKYTIV MDCLCKDGKV EEAITLYQEM ETKGMRVDIE AYTCLVRGLL SAGREEESKE
301: ILEDMIIKKI PFDLVFWNTF IDGLVKNGNL KDAGVMLTET MVKIGMKPNV VTYNTVMNGY CKKGLLNEAR EMMQAMVTGG CDPSIVTYNI LIKGYCKSGM
401: VDAGLKLFHD ISEQGELWPI QQPTTLLSTG FANQENSMMP KIFYEKCSHV VLLLMLGLLV RC

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.