CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027026.1-P	Field mustard	mitochondrion	97.37	91.97
CDY66358	Canola	mitochondrion	64.98	82.31
CDY46909	Canola	mitochondrion	43.93	74.32
AT1G62680.2	Thale cress	plastid	70.85	63.87
CDY66357	Canola	cytosol	46.36	60.42
CDY03257	Canola	cytosol	42.91	54.22
CDX67634	Canola	cytosol	46.36	54.14
CDY39810	Canola	cytosol	42.31	53.45
CDY09968	Canola	cytosol	30.97	52.04
CDY06217	Canola	cytosol	30.77	51.88
CDY46394	Canola	mitochondrion	49.39	50.73
CDY48949	Canola	mitochondrion	49.19	50.52
CDX69436	Canola	plastid	50.0	49.6
CDY65983	Canola	mitochondrion	42.11	49.29
CDY49646	Canola	mitochondrion	49.39	48.7
CDY08386	Canola	cytosol	43.52	48.31
CDY25492	Canola	mitochondrion	47.98	48.27
CDY34969	Canola	mitochondrion	47.98	46.84
CDY47835	Canola	mitochondrion	37.85	42.79
CDY31271	Canola	mitochondrion	41.09	41.77
CDY28348	Canola	mitochondrion, plastid	49.6	40.97
CDY29251	Canola	mitochondrion	41.9	40.83
CDY51169	Canola	cytosol	34.62	40.43
CDY34375	Canola	mitochondrion	41.9	40.04
CDY26607	Canola	cytosol	36.84	39.82
CDY68929	Canola	mitochondrion	48.18	39.21
CDY31272	Canola	mitochondrion	44.74	38.91
CDX89301	Canola	plastid	42.11	38.88
CDY16002	Canola	cytosol	24.29	38.59
CDY16031	Canola	cytosol	24.09	38.26
CDY16032	Canola	mitochondrion	31.38	37.99
CDY00489	Canola	mitochondrion	44.74	37.71
CDY33797	Canola	mitochondrion	38.66	37.3
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	41.3	37.16
CDY34688	Canola	cytosol	27.13	37.02
CDY26593	Canola	cytosol	45.14	36.62
CDX71969	Canola	cytosol	28.74	35.86
CDY25522	Canola	mitochondrion, plastid	32.39	35.79
CDY26565	Canola	mitochondrion	41.09	35.68
CDY16110	Canola	extracellular	29.55	35.61
CDY26588	Canola	extracellular	23.28	35.49
VIT_12s0028g02320.t01	Wine grape	mitochondrion	34.21	35.43
CDY34870	Canola	mitochondrion	20.04	34.49
CDY33753	Canola	mitochondrion	29.55	32.88
CDY35831	Canola	mitochondrion	34.01	32.62
VIT_14s0081g00120.t01	Wine grape	plastid	38.06	32.25
CDY16033	Canola	cytosol	9.72	32.0
Solyc06g007280.2.1	Tomato	cytosol	16.19	31.37
VIT_14s0081g00270.t01	Wine grape	plastid	36.44	31.03
VIT_14s0030g02280.t01	Wine grape	plastid	35.02	30.84
KRH70370	Soybean	cytosol	33.0	29.96
PGSC0003DMT400025074	Potato	cytosol	33.4	29.89
Solyc06g005220.2.1	Tomato	cytosol	24.49	29.8
CDY25519	Canola	mitochondrion, plastid	38.46	29.73
CDX68679	Canola	cytosol	6.88	29.57
PGSC0003DMT400052977	Potato	cytosol	23.28	29.56
CDY16003	Canola	cytosol, plastid	23.28	29.41
VIT_14s0081g00110.t01	Wine grape	cytosol	28.95	29.12
KRH09256	Soybean	mitochondrion	32.79	28.98
KRH49698	Soybean	cytosol	33.4	28.95
KRH42744	Soybean	mitochondrion	35.43	28.64
KRH58843	Soybean	nucleus	35.22	28.48
Solyc06g007300.1.1	Tomato	extracellular	34.01	28.38
PGSC0003DMT400008757	Potato	cytosol	28.54	28.31
Solyc06g007740.1.1	Tomato	cytosol	33.6	28.14
KRH38755	Soybean	mitochondrion	33.81	28.11
PGSC0003DMT400052971	Potato	mitochondrion	33.0	27.49
VIT_14s0081g00280.t01	Wine grape	mitochondrion	35.43	27.39
PGSC0003DMT400025087	Potato	endoplasmic reticulum	27.33	27.27
KRH75045	Soybean	mitochondrion	32.59	26.97
PGSC0003DMT400053185	Potato	mitochondrion	31.98	26.78
CDY34680	Canola	cytosol	48.99	26.54
KRH75048	Soybean	mitochondrion	32.59	26.48
CDX68680	Canola	mitochondrion	24.7	26.41
PGSC0003DMT400015298	Potato	mitochondrion	32.59	26.39
PGSC0003DMT400015293	Potato	mitochondrion	32.59	26.39
PGSC0003DMT400008760	Potato	mitochondrion	31.17	26.28
PGSC0003DMT400025067	Potato	cytosol	25.3	26.26
PGSC0003DMT400056663	Potato	plastid	31.17	26.19
KRH75063	Soybean	mitochondrion, plastid	31.98	26.16
PGSC0003DMT400056665	Potato	mitochondrion	31.17	26.15
PGSC0003DMT400053556	Potato	mitochondrion	24.29	26.14
PGSC0003DMT400008759	Potato	cytosol	16.8	26.02
Solyc04g080120.1.1	Tomato	extracellular	31.98	25.82
Solyc06g007810.1.1	Tomato	cytosol	13.97	25.75
PGSC0003DMT400053182	Potato	cytosol	31.17	25.71
VIT_14s0030g02260.t01	Wine grape	cytosol	21.66	24.15
CDY34370	Canola	cytosol	38.46	23.14
CDX81633	Canola	extracellular, golgi, plasma membrane	41.7	22.66
CDY26589	Canola	cytosol	2.83	20.29
CDY31277	Canola	plastid	33.0	17.0
CDY15970	Canola	cytosol	2.43	12.77
CDY21063	Canola	plastid	1.42	1.28

Protein Annotations

EnsemblPlants:CDY46912	EnsemblPlantsGene:GSBRNA2T00086384001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1649
PFAM:PF13041	PFscan:PS51375	ProteinID:CDY46912	ProteinID:CDY46912.1	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	TMHMM:TMhelix	UniParc:UPI0004EE83D8	UniProt:A0A078I9T7	MapMan:35.1	:

Description

BnaA09g12820DBnaA09g12820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9T7]

Coordinates

chrLK032690:-:43751..45322

Molecular Weight (calculated)

55198.5 Da

IEP (calculated)

8.282

GRAVY (calculated)

0.006

Length

494 amino acids

Sequence
(BLAST)

001: MQRWLATTAK RLLHRCNNLP QKAKPRTHLP SSSFYHRWAR ASSTAIKRNP NDAIELFDKM VNSRPYPSII SFTKLLTSLV KLKRYDVVIS LSKKMETLGI
101: RNDLYTFNVL INCFCSCYQV SLALSLLGKM LKLGFEPDKV TLGSLVNGFC LKNRVSEAVS FVKKMVEFGY GVDIVAYNTI IDSMCKSRRA DEALSFFNGI
201: EREGVSVRPN VVTYTSLVKG LCNVGRWSDA AGLLSDMIKR EISPNVVTYS ALVDAFVKNG KVLEAKELYE EMIRKSIEPD IVTYSSLING LCMQDRVDEA
301: SEMFGLMVRR GCFPDVVSYN TLINGFCKAK RVEDGMRLFR EMSQRGLMDS PDIWTYNILL GGLCDNGEVE KALAMFEDLQ KSEMELDIVT YTTIIHGMCK
401: AGKVEEAWGL FCSLSVKGVK PDVVAYSTMM SGLCSKGLHC EIDALYLKMQ GDGLVLKDGK LCVRDSDITV SAEVIKELLT RATSEGCEKA VSLL

Best Arabidopsis Sequence Match ( AT1G62680.2 )
(BLAST)

001: MQRSIAMTAK RFLHRNLLEN GKPRTASSPS FSHCSSCRCW VRASSSVSGG DLRERLSKTR LRDIKLNDAI DLFSDMVKSR PFPSIVDFNR LLSAIVKLKK
101: YDVVISLGKK MEVLGIRNDL YTFNIVINCF CCCFQVSLAL SILGKMLKLG YEPDRVTIGS LVNGFCRRNR VSDAVSLVDK MVEIGYKPDI VAYNAIIDSL
201: CKTKRVNDAF DFFKEIERKG IRPNVVTYTA LVNGLCNSSR WSDAARLLSD MIKKKITPNV ITYSALLDAF VKNGKVLEAK ELFEEMVRMS IDPDIVTYSS
301: LINGLCLHDR IDEANQMFDL MVSKGCLADV VSYNTLINGF CKAKRVEDGM KLFREMSQRG LVSNTVTYNT LIQGFFQAGD VDKAQEFFSQ MDFFGISPDI
401: WTYNILLGGL CDNGELEKAL VIFEDMQKRE MDLDIVTYTT VIRGMCKTGK VEEAWSLFCS LSLKGLKPDI VTYTTMMSGL CTKGLLHEVE ALYTKMKQEG
501: LMKNDCTLSD GDITLSAELI KKMLSCGYAP SLLKDIKSGV CKKALSLL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q3ECK2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.