Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33753 | Canola | mitochondrion | 38.39 | 78.6 |
| CDY16110 | Canola | extracellular | 34.76 | 77.07 |
| CDY33797 | Canola | mitochondrion | 42.35 | 75.2 |
| CDY00489 | Canola | mitochondrion | 47.19 | 73.21 |
| CDY26565 | Canola | mitochondrion | 45.65 | 72.94 |
| CDY26588 | Canola | extracellular | 25.19 | 70.68 |
| CDY16003 | Canola | cytosol, plastid | 30.03 | 69.82 |
| CDY51169 | Canola | cytosol | 32.45 | 69.74 |
| CDY26589 | Canola | cytosol | 5.28 | 69.57 |
| CDY16031 | Canola | cytosol | 23.54 | 68.81 |
| CDY35831 | Canola | mitochondrion | 38.94 | 68.74 |
| CDY16032 | Canola | mitochondrion | 29.59 | 65.93 |
| CDY26607 | Canola | cytosol | 32.78 | 65.21 |
| CDX71969 | Canola | cytosol | 28.38 | 65.15 |
| CDY26593 | Canola | cytosol | 43.01 | 64.2 |
| CDY31272 | Canola | mitochondrion | 39.82 | 63.73 |
| CDY16002 | Canola | cytosol | 21.67 | 63.34 |
| AT1G12620.1 | Thale cress | cytosol, mitochondrion | 43.23 | 63.28 |
| CDY68929 | Canola | mitochondrion | 42.24 | 63.26 |
| AT1G12300.1 | Thale cress | mitochondrion | 44.22 | 63.11 |
| CDY31271 | Canola | mitochondrion | 33.44 | 62.55 |
| CDY16026 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole | 37.51 | 62.11 |
| CDY34870 | Canola | mitochondrion | 19.58 | 62.02 |
| AT3G22470.1 | Thale cress | cytosol, mitochondrion | 42.02 | 61.71 |
| AT1G12775.1 | Thale cress | cytosol, mitochondrion | 41.69 | 58.85 |
| CDY16033 | Canola | cytosol | 9.68 | 58.67 |
| CDY15970 | Canola | cytosol | 5.39 | 52.13 |
| CDY34375 | Canola | mitochondrion | 28.82 | 50.68 |
| CDY34688 | Canola | cytosol | 19.47 | 48.9 |
| CDY09968 | Canola | cytosol | 15.18 | 46.94 |
| CDY39810 | Canola | cytosol | 20.02 | 46.55 |
| CDY03257 | Canola | cytosol | 19.91 | 46.29 |
| CDY06217 | Canola | cytosol | 14.85 | 46.08 |
| CDX67634 | Canola | cytosol | 21.34 | 45.86 |
| CDY25522 | Canola | mitochondrion, plastid | 21.67 | 44.07 |
| CDY49646 | Canola | mitochondrion | 23.98 | 43.51 |
| CDX69436 | Canola | plastid | 23.76 | 43.37 |
| CDY08386 | Canola | cytosol | 21.12 | 43.15 |
| CDY46909 | Canola | mitochondrion | 13.75 | 42.81 |
| CDY65983 | Canola | mitochondrion | 19.69 | 42.42 |
| VIT_12s0028g02320.t01 | Wine grape | mitochondrion | 22.22 | 42.35 |
| CDY46394 | Canola | mitochondrion | 22.22 | 42.0 |
| CDY46912 | Canola | mitochondrion | 22.66 | 41.7 |
| CDY66358 | Canola | mitochondrion | 17.82 | 41.54 |
| CDY25492 | Canola | mitochondrion | 22.33 | 41.34 |
| CDY47835 | Canola | mitochondrion | 19.69 | 40.96 |
| CDY48949 | Canola | mitochondrion | 21.67 | 40.96 |
| CDY25519 | Canola | mitochondrion, plastid | 28.38 | 40.38 |
| CDY34969 | Canola | mitochondrion | 22.33 | 40.12 |
| CDX68679 | Canola | cytosol | 5.06 | 40.0 |
| VIT_14s0081g00270.t01 | Wine grape | plastid | 25.41 | 39.83 |
| Solyc06g007280.2.1 | Tomato | cytosol | 10.89 | 38.82 |
| CDY29251 | Canola | mitochondrion | 21.12 | 37.87 |
| KRH70370 | Soybean | cytosol | 22.66 | 37.87 |
| VIT_14s0081g00120.t01 | Wine grape | plastid | 24.2 | 37.74 |
| KRH49698 | Soybean | cytosol | 23.43 | 37.37 |
| VIT_14s0081g00110.t01 | Wine grape | cytosol | 20.13 | 37.27 |
| CDX89301 | Canola | plastid | 21.56 | 36.64 |
| Solyc06g005220.2.1 | Tomato | cytosol | 16.28 | 36.45 |
| PGSC0003DMT400008757 | Potato | cytosol | 19.91 | 36.35 |
| KRH42744 | Soybean | mitochondrion | 24.2 | 36.01 |
| KRH75063 | Soybean | mitochondrion, plastid | 23.76 | 35.76 |
| KRH58843 | Soybean | nucleus | 23.87 | 35.52 |
| CDY28348 | Canola | mitochondrion, plastid | 23.21 | 35.28 |
| KRH75045 | Soybean | mitochondrion | 23.1 | 35.18 |
| PGSC0003DMT400025074 | Potato | cytosol | 21.23 | 34.96 |
| CDX68680 | Canola | mitochondrion | 17.71 | 34.85 |
| KRH75048 | Soybean | mitochondrion | 23.21 | 34.7 |
| PGSC0003DMT400008760 | Potato | mitochondrion | 22.33 | 34.64 |
| PGSC0003DMT400025087 | Potato | endoplasmic reticulum | 18.7 | 34.34 |
| PGSC0003DMT400056665 | Potato | mitochondrion | 22.11 | 34.13 |
| Solyc06g007740.1.1 | Tomato | cytosol | 22.11 | 34.07 |
| VIT_14s0030g02280.t01 | Wine grape | plastid | 21.01 | 34.05 |
| VIT_14s0081g00280.t01 | Wine grape | mitochondrion | 23.87 | 33.96 |
| KRH38755 | Soybean | mitochondrion | 22.11 | 33.84 |
| Solyc06g007300.1.1 | Tomato | extracellular | 21.89 | 33.61 |
| PGSC0003DMT400052977 | Potato | cytosol | 14.3 | 33.42 |
| PGSC0003DMT400025067 | Potato | cytosol | 17.38 | 33.19 |
| KRH09256 | Soybean | mitochondrion | 20.35 | 33.09 |
| PGSC0003DMT400052971 | Potato | mitochondrion | 21.56 | 33.05 |
| PGSC0003DMT400056663 | Potato | plastid | 21.34 | 32.99 |
| PGSC0003DMT400008759 | Potato | cytosol | 11.55 | 32.92 |
| CDY34370 | Canola | cytosol | 29.26 | 32.4 |
| PGSC0003DMT400053185 | Potato | mitochondrion | 21.01 | 32.37 |
| Solyc06g007810.1.1 | Tomato | cytosol | 9.46 | 32.09 |
| CDY31277 | Canola | plastid | 33.44 | 31.7 |
| PGSC0003DMT400053556 | Potato | mitochondrion | 15.84 | 31.37 |
| PGSC0003DMT400053182 | Potato | cytosol | 20.24 | 30.72 |
| CDY66357 | Canola | cytosol | 12.65 | 30.34 |
| PGSC0003DMT400015298 | Potato | mitochondrion | 20.02 | 29.84 |
| PGSC0003DMT400015293 | Potato | mitochondrion | 20.02 | 29.84 |
| Solyc04g080120.1.1 | Tomato | extracellular | 19.69 | 29.25 |
| VIT_14s0030g02260.t01 | Wine grape | cytosol | 12.65 | 25.96 |
| CDY34680 | Canola | cytosol | 16.94 | 16.89 |
| CDY21063 | Canola | plastid | 4.29 | 7.1 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:24.2.1.1.5 | GO:A0A078D2V3 | EnsemblPlants:CDX81633 | ProteinID:CDX81633 | ProteinID:CDX81633.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0055085 |
| EnsemblPlantsGene:GSBRNA2T00136546001 | InterPro:IPR002885 | InterPro:IPR011990 | PFAM:PF08449 | PFAM:PF12854 | PFAM:PF13041 |
| PFscan:PS51375 | PANTHER:PTHR44149 | PANTHER:PTHR44149:SF3 | InterPro:Pentatricopeptide_repeat | TIGRFAMs:TIGR00756 | TMHMM:TMhelix |
| InterPro:TPR-like_helical_dom_sf | InterPro:UAA | UniParc:UPI0004EDC22B | : | : | : |
Description
BnaC08g39680D
Coordinates
chrLK031826:-:91157..95382
Molecular Weight (calculated)
100511.0 Da
IEP (calculated)
7.221
GRAVY (calculated)
0.154
Length
909 amino acids
Sequence
(BLAST)
(BLAST)
001: MESHGSGLRR VLLLSFCVAG IWAAYIYQGV LQETLSTKRF GEDEKRFEHL AFLNLAQNVV CLVWSFIMIK LWSNGGSGGA PWWTYWSAGI TNTIGPAMGI
101: EALKYISYPA QVLAKSSKMI PVMLMGSLVY GIRYTLPEYL CTFLVAGGVS MFALLKTSSK TISKLANPNA PLGYGLCFLN LAFDGFTNAT QDSITARYPK
201: TSAWDIMLGM NLWGTIYNMV YMFGLPHGSG FEAVQFCKQH PEAAWDILMY CLCGAVGQNF IFLTISRFGS LANTTITTTR KFVSIVVSSV LSGNPLSSKQ
301: WGCVSMVFEN CGLGMPSGVL YQAMVVDPEL YLELAGVSWR SACILYNENG TCYLYRRYHA AGLDRKISCY KERLRSGIVG IKKDDAVALF QSMLRSRPLP
401: TVIDFSKLFT GIAKTKQYDL VLSLCEQMES NGIAHDIYTL SIVINCFCRC RRKLGFAFAV MGKMFKLGYK PDTVTFSTLI NGLCLEGRVS EAVELVDRMV
501: EMEVLPNLII LSTIVNGLCL QGKVSEAMAL IDRMVDNECQ PNAVTYGPIL NRMCKSDNTA LALDLLRKME LRKVKLDVFT HSMIIDGLCK DGNLEDALSL
601: FNEMKTKGIK ADVFTYNSLI GGFCNAGRWD DGAQLLKDMI AREITPDVNT FSALIDSFVK EGKLTEAKEL YNEMIVRGID PNTITNSSLI YGLCMENRLD
701: EANQMTDLMD SRGCDPNIVT YSILLNKAKL VDEGMRLFRK MSVGGVVADT VTYSSLIQGF CQSGKLNVAK ELFQEMVSEG VHPNIMTYGI LLEGKVDDAW
801: DLFCSLPSKG VKPDVKTYTV MIGGLCKKGS LSEADALFRK MEEDGITPIS GTYNTLIRAH LREGDLATSA KLIEEMKSCG FSADASTIKI VMDMLSDGRM
901: KKSFLDLLS
101: EALKYISYPA QVLAKSSKMI PVMLMGSLVY GIRYTLPEYL CTFLVAGGVS MFALLKTSSK TISKLANPNA PLGYGLCFLN LAFDGFTNAT QDSITARYPK
201: TSAWDIMLGM NLWGTIYNMV YMFGLPHGSG FEAVQFCKQH PEAAWDILMY CLCGAVGQNF IFLTISRFGS LANTTITTTR KFVSIVVSSV LSGNPLSSKQ
301: WGCVSMVFEN CGLGMPSGVL YQAMVVDPEL YLELAGVSWR SACILYNENG TCYLYRRYHA AGLDRKISCY KERLRSGIVG IKKDDAVALF QSMLRSRPLP
401: TVIDFSKLFT GIAKTKQYDL VLSLCEQMES NGIAHDIYTL SIVINCFCRC RRKLGFAFAV MGKMFKLGYK PDTVTFSTLI NGLCLEGRVS EAVELVDRMV
501: EMEVLPNLII LSTIVNGLCL QGKVSEAMAL IDRMVDNECQ PNAVTYGPIL NRMCKSDNTA LALDLLRKME LRKVKLDVFT HSMIIDGLCK DGNLEDALSL
601: FNEMKTKGIK ADVFTYNSLI GGFCNAGRWD DGAQLLKDMI AREITPDVNT FSALIDSFVK EGKLTEAKEL YNEMIVRGID PNTITNSSLI YGLCMENRLD
701: EANQMTDLMD SRGCDPNIVT YSILLNKAKL VDEGMRLFRK MSVGGVVADT VTYSSLIQGF CQSGKLNVAK ELFQEMVSEG VHPNIMTYGI LLEGKVDDAW
801: DLFCSLPSKG VKPDVKTYTV MIGGLCKKGS LSEADALFRK MEEDGITPIS GTYNTLIRAH LREGDLATSA KLIEEMKSCG FSADASTIKI VMDMLSDGRM
901: KKSFLDLLS
001: MRGLIQTRLL ETGTLRTALF LSCYGRVFSS VSDGKGKVSY RERLRSGIVD IKEDDAVDLF QEMTRSRPRP RLIDFSRLFS VVARTKQYDL VLDLCKQMEL
101: KGIAHNLYTL SIMINCCCRC RKLSLAFSAM GKIIKLGYEP DTVTFSTLIN GLCLEGRVSE ALELVDRMVE MGHKPTLITL NALVNGLCLN GKVSDAVLLI
201: DRMVETGFQP NEVTYGPVLK VMCKSGQTAL AMELLRKMEE RKIKLDAVKY SIIIDGLCKD GSLDNAFNLF NEMEIKGFKA DIIIYTTLIR GFCYAGRWDD
301: GAKLLRDMIK RKITPDVVAF SALIDCFVKE GKLREAEELH KEMIQRGISP DTVTYTSLID GFCKENQLDK ANHMLDLMVS KGCGPNIRTF NILINGYCKA
401: NLIDDGLELF RKMSLRGVVA DTVTYNTLIQ GFCELGKLEV AKELFQEMVS RRVRPDIVSY KILLDGLCDN GEPEKALEIF EKIEKSKMEL DIGIYNIIIH
501: GMCNASKVDD AWDLFCSLPL KGVKPDVKTY NIMIGGLCKK GSLSEADLLF RKMEEDGHSP NGCTYNILIR AHLGEGDATK SAKLIEEIKR CGFSVDASTV
601: KMVVDMLSDG RLKKSFLDML S
101: KGIAHNLYTL SIMINCCCRC RKLSLAFSAM GKIIKLGYEP DTVTFSTLIN GLCLEGRVSE ALELVDRMVE MGHKPTLITL NALVNGLCLN GKVSDAVLLI
201: DRMVETGFQP NEVTYGPVLK VMCKSGQTAL AMELLRKMEE RKIKLDAVKY SIIIDGLCKD GSLDNAFNLF NEMEIKGFKA DIIIYTTLIR GFCYAGRWDD
301: GAKLLRDMIK RKITPDVVAF SALIDCFVKE GKLREAEELH KEMIQRGISP DTVTYTSLID GFCKENQLDK ANHMLDLMVS KGCGPNIRTF NILINGYCKA
401: NLIDDGLELF RKMSLRGVVA DTVTYNTLIQ GFCELGKLEV AKELFQEMVS RRVRPDIVSY KILLDGLCDN GEPEKALEIF EKIEKSKMEL DIGIYNIIIH
501: GMCNASKVDD AWDLFCSLPL KGVKPDVKTY NIMIGGLCKK GSLSEADLLF RKMEEDGHSP NGCTYNILIR AHLGEGDATK SAKLIEEIKR CGFSVDASTV
601: KMVVDMLSDG RLKKSFLDML S
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g12620 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASZ8]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.