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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • plastid 1
  • plasma membrane 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, plasma membrane
BaCelLo:cytosol
iPSORT:plastid
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY39810 Canola cytosol 95.14 95.14
AT1G62720.1 Thale cress mitochondrion 72.89 58.76
CDY46909 Canola mitochondrion 40.15 53.77
CDY09968 Canola cytosol 39.13 52.04
CDY06217 Canola cytosol 38.62 51.54
CDX67634 Canola cytosol 53.71 49.65
CDY08386 Canola cytosol 52.43 46.07
CDY25492 Canola mitochondrion 56.27 44.81
CDY46394 Canola mitochondrion 53.96 43.87
CDY34969 Canola mitochondrion 56.52 43.68
CDY48949 Canola mitochondrion 53.45 43.45
CDY65983 Canola mitochondrion 46.8 43.36
CDY66358 Canola mitochondrion 42.97 43.08
CDX69436 Canola plastid 54.73 42.97
CDY46912 Canola mitochondrion 54.22 42.91
CDY49646 Canola mitochondrion 54.48 42.52
CDY51169 Canola cytosol 42.2 39.01
CDY16031 Canola cytosol 30.69 38.59
CDY16002 Canola cytosol 30.18 37.94
CDY26588 Canola extracellular 31.2 37.65
CDY47835 Canola mitochondrion 41.94 37.53
CDY28348 Canola mitochondrion, plastid 56.52 36.96
CDY34688 Canola cytosol 33.5 36.19
CDY26607 Canola cytosol 41.69 35.67
CDY16110 Canola extracellular 36.83 35.12
CDY66357 Canola cytosol 34.02 35.09
CDY34375 Canola mitochondrion 46.29 35.01
CDY29251 Canola mitochondrion 45.27 34.91
CDY16026 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole 47.83 34.06
CDX71969 Canola cytosol 34.27 33.84
CDY31271 Canola mitochondrion 41.69 33.54
CDX89301 Canola plastid 45.78 33.46
CDY33797 Canola mitochondrion 43.48 33.2
VIT_12s0028g02320.t01 Wine grape mitochondrion 40.15 32.91
CDY31272 Canola mitochondrion 47.57 32.75
CDY26593 Canola cytosol 50.38 32.35
CDY00489 Canola mitochondrion 48.34 32.25
CDY25522 Canola mitochondrion, plastid 36.83 32.21
CDY26565 Canola mitochondrion 46.8 32.16
CDY68929 Canola mitochondrion 49.62 31.96
CDY35831 Canola mitochondrion 41.43 31.46
CDY33753 Canola mitochondrion 35.29 31.08
PGSC0003DMT400008759 Potato cytosol 25.32 31.03
Solyc06g005220.2.1 Tomato cytosol 31.97 30.79
CDY16032 Canola mitochondrion 31.97 30.64
Solyc06g007280.2.1 Tomato cytosol 19.69 30.2
VIT_14s0081g00110.t01 Wine grape cytosol 37.34 29.74
Solyc06g007810.1.1 Tomato cytosol 20.2 29.48
PGSC0003DMT400052977 Potato cytosol 29.16 29.31
KRH09256 Soybean mitochondrion 40.66 28.44
KRH49698 Soybean cytosol 41.43 28.42
KRH70370 Soybean cytosol 39.39 28.31
PGSC0003DMT400025087 Potato endoplasmic reticulum 35.81 28.28
KRH38755 Soybean mitochondrion 42.71 28.11
VIT_14s0081g00270.t01 Wine grape plastid 41.43 27.93
PGSC0003DMT400008757 Potato cytosol 35.04 27.51
VIT_14s0081g00120.t01 Wine grape plastid 40.15 26.93
CDY25519 Canola mitochondrion, plastid 43.99 26.92
PGSC0003DMT400025067 Potato cytosol 32.74 26.89
PGSC0003DMT400025074 Potato cytosol 37.6 26.63
CDY16033 Canola cytosol 9.97 26.0
CDY34870 Canola mitochondrion 18.93 25.78
KRH42744 Soybean mitochondrion 40.15 25.7
KRH58843 Soybean nucleus 39.9 25.53
VIT_14s0030g02280.t01 Wine grape plastid 36.57 25.49
Solyc06g007300.1.1 Tomato extracellular 38.11 25.17
KRH75063 Soybean mitochondrion, plastid 38.62 25.0
KRH75045 Soybean mitochondrion 38.11 24.96
PGSC0003DMT400056665 Potato mitochondrion 37.6 24.96
PGSC0003DMT400008760 Potato mitochondrion 36.83 24.57
KRH75048 Soybean mitochondrion 38.11 24.51
PGSC0003DMT400053556 Potato mitochondrion 28.64 24.4
CDX68679 Canola cytosol 7.16 24.35
CDY16003 Canola cytosol, plastid 24.3 24.3
PGSC0003DMT400056663 Potato plastid 36.32 24.15
Solyc06g007740.1.1 Tomato cytosol 36.32 24.07
VIT_14s0081g00280.t01 Wine grape mitochondrion 38.87 23.79
PGSC0003DMT400052971 Potato mitochondrion 35.81 23.61
PGSC0003DMT400015298 Potato mitochondrion 35.81 22.95
PGSC0003DMT400015293 Potato mitochondrion 35.81 22.95
PGSC0003DMT400053185 Potato mitochondrion 34.53 22.88
Solyc04g080120.1.1 Tomato extracellular 35.04 22.39
VIT_14s0030g02260.t01 Wine grape cytosol 25.32 22.35
CDX68680 Canola mitochondrion 25.83 21.86
PGSC0003DMT400053182 Potato cytosol 31.46 20.53
CDY34370 Canola cytosol 42.71 20.34
CDX81633 Canola extracellular, golgi, plasma membrane 46.29 19.91
CDY34680 Canola cytosol 44.76 19.19
CDY31277 Canola plastid 38.36 15.64
CDY26589 Canola cytosol 1.02 5.8
CDY15970 Canola cytosol 1.02 4.26
CDY21063 Canola plastid 0.0 0.0
Protein Annotations
EnsemblPlants:CDY03257EnsemblPlantsGene:GSBRNA2T00115800001Gene3D:1.25.40.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002885InterPro:IPR011990InterPro:Pentatricopeptide_repeatInterPro:TPR-like_helical_dom_sfPANTHER:PTHR24015PANTHER:PTHR24015:SF1649
PFAM:PF12854PFAM:PF13041PFscan:PS51375ProteinID:CDY03257ProteinID:CDY03257.1TIGRFAMs:TIGR00756
UniParc:UPI0004EE7DF6MapMan:35.1::::
Description
BnaC09g10910D
Coordinates
chrLK031942:-:121953..123128
Molecular Weight (calculated)
44213.2 Da
IEP (calculated)
5.031
GRAVY (calculated)
0.121
Length
391 amino acids
Sequence
(BLAST)
001: METLGITHDL YTYNILINCL CRCSRFSIAL SVIGKMMKLG FDPDVVTLSS LINGFCRRNR VFDAIELVAK MEAMGCKPDV VIYNTIIDGF CKNRLVNNAL
101: ELFEQMDKNG VSADVVTYNS LITGLCSFGR CNDADLLLRD MVMRNVVPNV ITFTALIDAS VKEGNLLEAE KLHEEMVNRS IVPDVFAYNS MINGLCMHGR
201: VDEAKQMLEL MVTKECLPDI VTYNTLINGF CKFKRVDDVM KLFSEMSERG LLRDTVTYNT IILGYFQVGK PDAAQGVFRR MDSPPNLRTY SILLYGLFNN
301: GKVEKALVVF QDMQKSGMDL DVTIYNIMIH IMCKAGYVED AWDLFCGLAV NGVEPDVVSY TTMISGFCRK RLWQEADELY RKMHEDGLLP L
Best Arabidopsis Sequence Match ( AT1G62720.1 )
(BLAST)
001: MRRSTTISIA SKANKFLNLC LLQKGNPVIV PFISRFWGRT FSTKRSSMNL EEEIDLFCKM IQSRPLPSIV DFSKVLSKIA KSKNYDLVIS LFHHMEVCGI
101: GHDLYSYNIV INCLCRCSRF VIALSVVGKM MKFGYEPDVV TVSSLINGFC QGNRVFDAID LVSKMEEMGF RPDVVIYNTI IDGSCKIGLV NDAVELFDRM
201: ERDGVRADAV TYNSLVAGLC CSGRWSDAAR LMRDMVMRDI VPNVITFTAV IDVFVKEGKF SEAMKLYEEM TRRCVDPDVF TYNSLINGLC MHGRVDEAKQ
301: MLDLMVTKGC LPDVVTYNTL INGFCKSKRV DEGTKLFREM AQRGLVGDTI TYNTIIQGYF QAGRPDAAQE IFSRMDSRPN IRTYSILLYG LCMNWRVEKA
401: LVLFENMQKS EIELDITTYN IVIHGMCKIG NVEDAWDLFR SLSCKGLKPD VVSYTTMISG FCRKRQWDKS DLLYRKMQED GLLPL
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g62720 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI78]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.