CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26589	Canola	cytosol	11.04	71.01
CDY16110	Canola	extracellular	55.86	60.49
CDY26565	Canola	mitochondrion	73.2	57.12
CDY16033	Canola	cytosol	19.14	56.67
CDY33797	Canola	mitochondrion	64.19	55.66
CDY00489	Canola	mitochondrion	72.3	54.78
CDY51169	Canola	cytosol	49.55	52.01
CDY35831	Canola	mitochondrion	60.14	51.84
CDY15970	Canola	cytosol	10.59	50.0
CDY68929	Canola	mitochondrion	68.24	49.92
AT1G12620.1	Thale cress	cytosol, mitochondrion	69.59	49.76
CDY31272	Canola	mitochondrion	63.29	49.47
CDY26588	Canola	extracellular	35.81	49.07
CDY26593	Canola	cytosol	67.12	48.93
AT1G12300.1	Thale cress	mitochondrion	70.05	48.82
CDY26607	Canola	cytosol	50.23	48.8
CDY31271	Canola	mitochondrion	53.38	48.77
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	59.01	47.72
AT3G22470.1	Thale cress	cytosol, mitochondrion	65.54	47.01
CDX71969	Canola	cytosol	40.77	45.71
AT1G12775.1	Thale cress	cytosol, mitochondrion	65.09	44.88
CDY16031	Canola	cytosol	30.86	44.05
CDY34688	Canola	cytosol	35.36	43.37
CDY16003	Canola	cytosol, plastid	36.94	41.94
CDX68679	Canola	cytosol	10.81	41.74
CDY16032	Canola	mitochondrion	38.29	41.67
CDY16002	Canola	cytosol	28.83	41.16
CDY34375	Canola	mitochondrion	46.17	39.65
CDX81633	Canola	extracellular, golgi, plasma membrane	78.6	38.39
CDY09968	Canola	cytosol	25.0	37.76
CDY06217	Canola	cytosol	24.77	37.54
CDY39810	Canola	cytosol	31.31	35.55
CDY03257	Canola	cytosol	31.08	35.29
CDY08386	Canola	cytosol	34.01	33.93
CDY47835	Canola	mitochondrion	33.33	33.87
CDY34870	Canola	mitochondrion	21.85	33.8
CDX69436	Canola	plastid	37.61	33.53
CDY46909	Canola	mitochondrion	21.85	33.22
CDY25522	Canola	mitochondrion, plastid	33.11	32.89
CDX67634	Canola	cytosol	31.08	32.62
CDY49646	Canola	mitochondrion	36.49	32.34
CDY66358	Canola	mitochondrion	28.38	32.31
Solyc06g007810.1.1	Tomato	cytosol	18.92	31.34
CDY46394	Canola	mitochondrion	33.33	30.77
PGSC0003DMT400008759	Potato	cytosol	22.07	30.72
CDY25519	Canola	mitochondrion, plastid	44.14	30.67
CDY25492	Canola	mitochondrion	33.33	30.14
CDY48949	Canola	mitochondrion	32.43	29.94
CDY46912	Canola	mitochondrion	32.88	29.55
VIT_14s0081g00110.t01	Wine grape	cytosol	31.76	28.72
CDY34969	Canola	mitochondrion	32.43	28.46
VIT_12s0028g02320.t01	Wine grape	mitochondrion	30.41	28.3
CDY65983	Canola	mitochondrion	26.58	27.96
VIT_14s0081g00270.t01	Wine grape	plastid	36.26	27.76
KRH42744	Soybean	mitochondrion	37.16	27.0
KRH58843	Soybean	nucleus	36.26	26.35
CDY66357	Canola	cytosol	22.3	26.12
PGSC0003DMT400008757	Potato	cytosol	29.28	26.1
VIT_14s0081g00120.t01	Wine grape	plastid	34.01	25.9
Solyc06g007280.2.1	Tomato	cytosol	14.86	25.88
Solyc06g005220.2.1	Tomato	cytosol	23.42	25.62
KRH49698	Soybean	cytosol	32.66	25.44
CDY28348	Canola	mitochondrion, plastid	34.23	25.42
PGSC0003DMT400052977	Potato	cytosol	22.07	25.19
KRH70370	Soybean	cytosol	30.86	25.18
PGSC0003DMT400025087	Potato	endoplasmic reticulum	27.93	25.05
CDY29251	Canola	mitochondrion	28.38	24.85
VIT_14s0030g02260.t01	Wine grape	cytosol	24.55	24.61
CDX89301	Canola	plastid	29.28	24.3
VIT_14s0081g00280.t01	Wine grape	mitochondrion	34.68	24.1
Solyc06g007740.1.1	Tomato	cytosol	31.98	24.07
PGSC0003DMT400008760	Potato	mitochondrion	31.76	24.06
CDX68680	Canola	mitochondrion	25.0	24.03
KRH75063	Soybean	mitochondrion, plastid	32.66	24.01
CDY34370	Canola	cytosol	44.37	24.0
Solyc06g007300.1.1	Tomato	extracellular	31.98	23.99
PGSC0003DMT400056665	Potato	mitochondrion	31.76	23.94
KRH75048	Soybean	mitochondrion	32.66	23.85
KRH75045	Soybean	mitochondrion	31.98	23.79
KRH38755	Soybean	mitochondrion	31.76	23.74
KRH09256	Soybean	mitochondrion	29.73	23.61
PGSC0003DMT400052971	Potato	mitochondrion	31.53	23.61
PGSC0003DMT400025074	Potato	cytosol	29.28	23.55
PGSC0003DMT400053185	Potato	mitochondrion	31.08	23.39
PGSC0003DMT400053182	Potato	cytosol	31.31	23.21
PGSC0003DMT400025067	Potato	cytosol	24.77	23.11
CDY31277	Canola	plastid	49.77	23.04
PGSC0003DMT400056663	Potato	plastid	30.18	22.79
PGSC0003DMT400053556	Potato	mitochondrion	23.42	22.66
VIT_14s0030g02280.t01	Wine grape	plastid	28.15	22.28
PGSC0003DMT400015293	Potato	mitochondrion	27.7	20.16
PGSC0003DMT400015298	Potato	mitochondrion	27.7	20.16
Solyc04g080120.1.1	Tomato	extracellular	27.7	20.1
CDY34680	Canola	cytosol	30.18	14.69
CDY21063	Canola	plastid	5.41	4.37

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078HA68	EnsemblPlants:CDY33753	ProteinID:CDY33753	ProteinID:CDY33753.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00055168001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1649
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EED225	SEG:seg

Description

BnaA09g45590DBnaA09g45590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HA68]

Coordinates

chrLK032321:+:215970..217975

Molecular Weight (calculated)

49788.8 Da

IEP (calculated)

8.516

GRAVY (calculated)

0.041

Length

444 amino acids

Sequence
(BLAST)

001: MLCRRLVREP RIPLSLGGTL TVTTHHLLSR KMSCYKERLR SGIVDIKKDE AVALFQTMIV SRPLPTQMEM NGIAHDLYTL SIVINCFCRR RKLVTFSTLI
101: NGLCLKGRVS EAVELVDRMV EMKVIPNLII LNTLVNGLCL QDRVSEAVAL IDRMVANGCQ PDQFTYGPIL NRMCKWKIER SSLKYALIDS FVKEGKLTEA
201: KELYNEMIVR GLDPNTITYG SLIHGLCMEN RLDEANQMLD LMVSKGCDPD IWTYNILING YCKAKLVDEG MRLFRKMSLR GVVADTVTYS SLIQGFCQSG
301: KLKVAKELFQ EMVSQGVHPN IVTYKILMDG VDEAWDLFCS LPLKEVKPDV KTYTIMIGGL CKKGSMSKAG LLFKKMGEDG IAPDDCTWNT LIRAHLRGGD
401: LATSAKLIEE MKSCGFSADA STIKIVMDML SDGRMKKSFL DLLS

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.