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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • mitochondrion 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:secretory
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY21063 Canola plastid 56.31 98.36
Bra016758.1-P Field mustard plastid 91.45 75.67
CDY16033 Canola cytosol 10.11 64.67
CDY26589 Canola cytosol 4.48 62.32
CDY31272 Canola mitochondrion 35.66 60.21
CDY51169 Canola cytosol 24.5 55.56
CDY68929 Canola mitochondrion 33.79 53.38
CDY33797 Canola mitochondrion 28.36 53.12
CDX71969 Canola cytosol 21.48 52.02
CDX68679 Canola cytosol 6.15 51.3
CDY16031 Canola cytosol 16.37 50.48
CDY31271 Canola mitochondrion 25.55 50.41
AT1G12620.1 Thale cress cytosol, mitochondrion 32.64 50.4
CDY00489 Canola mitochondrion 30.76 50.34
CDY35831 Canola mitochondrion 27.01 50.29
CDY26565 Canola mitochondrion 29.72 50.09
AT3G22470.1 Thale cress cytosol, mitochondrion 32.33 50.08
AT1G12300.1 Thale cress mitochondrion 33.26 50.08
CDY15970 Canola cytosol 4.9 50.0
CDY33753 Canola mitochondrion 23.04 49.77
CDY16110 Canola extracellular 20.75 48.54
CDY26588 Canola extracellular 16.37 48.46
CDY16002 Canola cytosol 15.54 47.91
AT1G12775.1 Thale cress cytosol, mitochondrion 31.6 47.05
CDY26593 Canola cytosol 29.3 46.14
CDY16026 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole 26.07 45.54
CDY26607 Canola cytosol 21.38 44.86
CDY34870 Canola mitochondrion 13.03 43.55
CDY16003 Canola cytosol, plastid 17.41 42.71
CDY34688 Canola cytosol 15.43 40.88
CDY09968 Canola cytosol 12.51 40.82
CDY34375 Canola mitochondrion 22.0 40.81
CDY06217 Canola cytosol 12.1 39.59
CDY39810 Canola cytosol 15.95 39.13
CDX67634 Canola cytosol 17.0 38.53
CDY03257 Canola cytosol 15.64 38.36
CDY16032 Canola mitochondrion 16.16 37.99
CDY65983 Canola mitochondrion 15.95 36.26
CDX69436 Canola plastid 18.77 36.14
CDY46394 Canola mitochondrion 17.94 35.76
VIT_12s0028g02320.t01 Wine grape mitochondrion 17.73 35.64
CDY49646 Canola mitochondrion 18.46 35.33
CDY08386 Canola cytosol 16.37 35.28
CDY48949 Canola mitochondrion 17.52 34.93
CDY46909 Canola mitochondrion 10.53 34.59
CDY34969 Canola mitochondrion 18.25 34.59
CDY47835 Canola mitochondrion 15.43 33.87
CDY25492 Canola mitochondrion 17.31 33.81
CDY25522 Canola mitochondrion, plastid 15.64 33.56
CDX81633 Canola extracellular, golgi, plasma membrane 31.7 33.44
VIT_14s0081g00270.t01 Wine grape plastid 20.02 33.1
CDY46912 Canola mitochondrion 17.0 33.0
VIT_14s0081g00120.t01 Wine grape plastid 19.71 32.42
CDY66358 Canola mitochondrion 12.93 31.79
VIT_14s0081g00110.t01 Wine grape cytosol 16.27 31.77
Solyc06g007810.1.1 Tomato cytosol 8.86 31.72
CDY25519 Canola mitochondrion, plastid 20.54 30.83
CDY28348 Canola mitochondrion, plastid 19.19 30.77
CDY29251 Canola mitochondrion 15.54 29.39
PGSC0003DMT400008757 Potato cytosol 15.22 29.32
KRH70370 Soybean cytosol 16.58 29.23
VIT_14s0081g00280.t01 Wine grape mitochondrion 19.4 29.11
PGSC0003DMT400052977 Potato cytosol 11.78 29.05
PGSC0003DMT400008760 Potato mitochondrion 17.73 29.01
PGSC0003DMT400008759 Potato cytosol 9.59 28.84
KRH75063 Soybean mitochondrion, plastid 18.14 28.81
KRH58843 Soybean nucleus 18.35 28.81
PGSC0003DMT400025087 Potato endoplasmic reticulum 14.7 28.48
KRH49698 Soybean cytosol 16.89 28.42
Solyc06g007300.1.1 Tomato extracellular 17.52 28.38
KRH42744 Soybean mitochondrion 18.04 28.31
KRH75048 Soybean mitochondrion 17.94 28.29
CDX89301 Canola plastid 15.75 28.22
PGSC0003DMT400052971 Potato mitochondrion 17.31 27.99
VIT_14s0030g02280.t01 Wine grape plastid 16.27 27.81
KRH75045 Soybean mitochondrion 17.31 27.81
KRH38755 Soybean mitochondrion 17.1 27.61
PGSC0003DMT400056663 Potato plastid 16.89 27.55
PGSC0003DMT400053556 Potato mitochondrion 13.14 27.45
KRH09256 Soybean mitochondrion 15.95 27.37
PGSC0003DMT400056665 Potato mitochondrion 16.79 27.33
PGSC0003DMT400025067 Potato cytosol 13.56 27.31
PGSC0003DMT400053185 Potato mitochondrion 16.68 27.12
Solyc06g005220.2.1 Tomato cytosol 11.47 27.09
PGSC0003DMT400025074 Potato cytosol 15.33 26.63
Solyc06g007740.1.1 Tomato cytosol 16.37 26.61
VIT_14s0030g02260.t01 Wine grape cytosol 12.2 26.41
PGSC0003DMT400053182 Potato cytosol 15.75 25.21
CDY66357 Canola cytosol 9.7 24.54
CDY34370 Canola cytosol 20.96 24.48
Solyc04g080120.1.1 Tomato extracellular 15.22 23.86
PGSC0003DMT400015293 Potato mitochondrion 15.12 23.77
PGSC0003DMT400015298 Potato mitochondrion 15.12 23.77
Solyc06g007280.2.1 Tomato cytosol 6.26 23.53
CDX68680 Canola mitochondrion 9.8 20.35
CDY34680 Canola cytosol 13.76 14.47
Protein Annotations
Gene3D:1.25.40.10Gene3D:3.40.50.300MapMan:35.1GO:A0A078H193UniProt:A0A078H193EnsemblPlants:CDY31277
ProteinID:CDY31277ProteinID:CDY31277.1ncoils:CoilInterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0003674
GO:GO:0003676GO:GO:0005488GO:GO:0005515GO:GO:0005524EnsemblPlantsGene:GSBRNA2T00047439001InterPro:Helicase_ATP-bd
InterPro:Helicase_CInterPro:IPR001650InterPro:IPR002885InterPro:IPR011990InterPro:IPR014001InterPro:IPR014014
InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PFAM:PF01535PFAM:PF12854PFAM:PF13041
PFscan:PS51192PFscan:PS51194PFscan:PS51195PFscan:PS51375PANTHER:PTHR24031PANTHER:PTHR24031:SF537
InterPro:Pentatricopeptide_repeatInterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487SMART:SM00490SUPFAM:SSF52540TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sfUniParc:UPI0004EE5194SEG:seg:::
Description
BnaC08g15720DBnaC08g15720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H193]
Coordinates
chrLK032269:+:462969..466429
Molecular Weight (calculated)
105359.0 Da
IEP (calculated)
8.369
GRAVY (calculated)
-0.076
Length
959 amino acids
Sequence
(BLAST)
001: MAAASVSTRF LVLLQDFSAF RKISSWRSAA TNYHRQSRLL CHVAKGDGSL TLASLELGNN SPRRSGKSKA TKLEGSFVPE MSQGKVRAAT NYKVKVVKEK
101: KPAEIVSPLF SAKSFEELGL PDSLLDSLER EGFSVPTDVQ SAAVPAIIKG HDAVIQSYTG SGKTLAYLLP ILSEIGPLSG KAKSSEKRAE IQAMIVAPSR
201: ELGMQIVREV EKLLGPDHRR MVQQLVGGAN RMRQEEALKK NKPAIVVGTP GRIAEISKSG RLHTHGCRFL VLDEVDELLS FNFREDIHRI IEHVGRRAGA
301: GPKGEVDERA NRQTILVSAT VPFSVIRAAK SWSHEPVLVQ ANKTTPLDTV QPTAPAISLT PTTSEANGQI QTTIQSLPPA LKHFYCISKH QHKVDALRRC
401: VHALDAQSVI AFMNHSKQLK DVVYKLEARG MTCAELHGDL GKLGRSTVLK KFKNGEVRVL VTNELSARGL DVAECDLVVN LELPTDAVHY AHRAGRTGRL
501: GRKGTVVTVC EESQVFIVKK MEKQLGLPFE YCEFVDGELV VTEEDKAIIS RLFSAVAKTK QYELVLSLCK QMELQGIAHS IYTLSIVINC FCRRRKLGFA
601: FSVLAKMLKL GYEPDTFTFS TLVNGKVPEA VALIDRIVEH GCQPNACTYG PVLNSIFSAL SLFNEMEAKG IEANVVTYNS LISSFCKAGR WDDGAQLLKD
701: MITRGIASDV VIFNALIDCL VKERKLKEAE ELHCKVKRVD DGMKLFREIS LRGLVADTIT YSILIQGFCQ EGKLNVAKEL FQEMVSEGAR PDTVTYGILL
801: DGLCDNGELE EALEILDKMH TSKMDPGIGV YNIIIHGMCN ARKVDDAWDL FSSLLPLKGV KADVKTYTIM IAGLCKKGSL SEADMLFKKM GEEDGIAPNE
901: CTYNTLIRAH LGGSGVVASV ELIEEMKRCG FAADGSTMKM VIDMLSDGRL NKSFWSMLS
Best Arabidopsis Sequence Match ( AT1G12770.1 )
(BLAST)
001: MAASTSTRFL VLLKDFSAFR KISWTCAATN FHRQSRFLCH VAKEDGSLTL ASLDLGNKPR KFGKGKAMKL EGSFVTEMGQ GKVRAVKNDK MKVVKEKKPA
101: EIVSPLFSAK SFEELGLPDS LLDSLEREGF SVPTDVQSAA VPAIIKGHDA VIQSYTGSGK TLAYLLPILS EIGPLAEKSR SSHSENDKRT EIQAMIVAPS
201: RELGMQIVRE VEKLLGPVHR RMVQQLVGGA NRMRQEEALK KNKPAIVVGT PGRIAEISKG GKLHTHGCRF LVLDEVDELL SFNFREDIHR ILEHVGKRSG
301: AGPKGEVDER ANRQTILVSA TVPFSVIRAA KSWSHEPVLV QANKVTPLDT VQPSAPVMSL TPTTSEADGQ IQTTIQSLPP ALKHYYCISK HQHKVDTLRR
401: CVHALDAQSV IAFMNHSRQL KDVVYKLEAR GMNSAEMHGD LGKLGRSTVL KKFKNGEIKV LVTNELSARG LDVAECDLVV NLELPTDAVH YAHRAGRTGR
501: LGRKGTVVTV CEESQVFIVK KMEKQLGLPF LYCEFVDGEL VVTEEDKAII R
Arabidopsis Description
RH47DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8W4E1]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.