CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34969	Canola	mitochondrion	77.42	91.5
AT3G16710.1	Thale cress	mitochondrion	59.53	70.22
CDX67634	Canola	cytosol	40.97	57.92
CDY03257	Canola	cytosol	36.96	56.52
CDY39810	Canola	cytosol	36.96	56.52
CDY46394	Canola	mitochondrion	45.15	56.13
CDY48949	Canola	mitochondrion	44.98	55.93
CDY46909	Canola	mitochondrion	26.42	54.11
CDX69436	Canola	plastid	44.65	53.61
CDY09968	Canola	cytosol	25.92	52.72
CDY06217	Canola	cytosol	25.59	52.22
CDY49646	Canola	mitochondrion	42.98	51.3
CDY08386	Canola	cytosol	37.46	50.34
CDY65983	Canola	mitochondrion	35.45	50.24
CDY46912	Canola	mitochondrion	40.97	49.6
CDY25492	Canola	mitochondrion	40.64	49.49
CDY66358	Canola	mitochondrion	31.77	48.72
CDY47835	Canola	mitochondrion	33.61	46.0
CDY34375	Canola	mitochondrion	36.29	41.97
CDY51169	Canola	cytosol	29.1	41.13
CDY31271	Canola	mitochondrion	33.28	40.95
CDY16031	Canola	cytosol	21.24	40.84
CDY29251	Canola	mitochondrion	34.62	40.83
CDY31272	Canola	mitochondrion	38.13	40.14
CDY33797	Canola	mitochondrion	34.11	39.84
CDX89301	Canola	plastid	34.95	39.07
CDY16002	Canola	cytosol	20.23	38.91
CDY00489	Canola	mitochondrion	37.96	38.74
CDY34688	Canola	cytosol	23.24	38.4
CDY26588	Canola	extracellular	20.57	37.96
CDY68929	Canola	mitochondrion	38.29	37.73
CDY26593	Canola	cytosol	38.29	37.6
VIT_12s0028g02320.t01	Wine grape	mitochondrion	29.93	37.53
CDY66357	Canola	cytosol	23.58	37.2
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	34.11	37.16
CDY16110	Canola	extracellular	25.25	36.83
CDY26565	Canola	mitochondrion	34.95	36.73
CDY25522	Canola	mitochondrion, plastid	27.42	36.69
CDY26607	Canola	cytosol	27.42	35.89
CDY35831	Canola	mitochondrion	30.77	35.73
CDY16032	Canola	mitochondrion	24.25	35.54
CDX71969	Canola	cytosol	23.41	35.35
CDY34870	Canola	mitochondrion	16.89	35.19
CDY33753	Canola	mitochondrion	25.42	34.23
CDY16033	Canola	cytosol	8.53	34.0
VIT_14s0081g00270.t01	Wine grape	plastid	32.11	33.1
PGSC0003DMT400008759	Potato	cytosol	17.56	32.92
Solyc06g005220.2.1	Tomato	cytosol	22.24	32.76
VIT_14s0030g02280.t01	Wine grape	plastid	30.27	32.26
CDY25519	Canola	mitochondrion, plastid	34.45	32.24
PGSC0003DMT400008757	Potato	cytosol	26.76	32.13
VIT_14s0081g00120.t01	Wine grape	plastid	30.94	31.73
PGSC0003DMT400025074	Potato	cytosol	29.26	31.7
KRH70370	Soybean	cytosol	28.6	31.43
PGSC0003DMT400008760	Potato	mitochondrion	30.77	31.4
Solyc06g007280.2.1	Tomato	cytosol	13.38	31.37
KRH09256	Soybean	mitochondrion	29.26	31.31
KRH38755	Soybean	mitochondrion	30.94	31.14
VIT_14s0081g00280.t01	Wine grape	mitochondrion	33.28	31.14
KRH49698	Soybean	cytosol	29.43	30.88
KRH58843	Soybean	nucleus	31.44	30.77
PGSC0003DMT400025087	Potato	endoplasmic reticulum	25.25	30.51
KRH42744	Soybean	mitochondrion	31.1	30.44
VIT_14s0081g00110.t01	Wine grape	cytosol	24.92	30.35
KRH75045	Soybean	mitochondrion	30.1	30.15
Solyc06g007810.1.1	Tomato	cytosol	13.38	29.85
PGSC0003DMT400052977	Potato	cytosol	19.4	29.82
PGSC0003DMT400056665	Potato	mitochondrion	29.1	29.54
KRH75063	Soybean	mitochondrion, plastid	29.77	29.47
KRH75048	Soybean	mitochondrion	29.93	29.44
PGSC0003DMT400053556	Potato	mitochondrion	22.58	29.41
PGSC0003DMT400025067	Potato	cytosol	23.41	29.41
Solyc06g007300.1.1	Tomato	extracellular	29.1	29.39
Solyc06g007740.1.1	Tomato	cytosol	28.6	28.98
PGSC0003DMT400053185	Potato	mitochondrion	28.6	28.98
PGSC0003DMT400015298	Potato	mitochondrion	29.43	28.85
PGSC0003DMT400015293	Potato	mitochondrion	29.43	28.85
CDX68679	Canola	cytosol	5.52	28.7
CDY16003	Canola	cytosol, plastid	18.73	28.64
PGSC0003DMT400056663	Potato	plastid	27.93	28.4
PGSC0003DMT400052971	Potato	mitochondrion	28.09	28.33
Solyc04g080120.1.1	Tomato	extracellular	28.76	28.1
PGSC0003DMT400053182	Potato	cytosol	27.76	27.71
CDX68680	Canola	mitochondrion	21.4	27.71
VIT_14s0030g02260.t01	Wine grape	cytosol	19.73	26.64
CDY34370	Canola	cytosol	35.12	25.58
CDX81633	Canola	extracellular, golgi, plasma membrane	35.28	23.21
CDY34680	Canola	cytosol	31.27	20.5
CDY31277	Canola	plastid	30.77	19.19
CDY26589	Canola	cytosol	1.84	15.94
CDY15970	Canola	cytosol	1.67	10.64
CDY21063	Canola	plastid	2.01	2.19

Protein Annotations

EnsemblPlants:CDY28348	EnsemblPlantsGene:GSBRNA2T00040133001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1649
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY28348	ProteinID:CDY28348.1	SEG:seg
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0004EE17FA	UniProt:A0A078GUN1	MapMan:35.1	:

Description

BnaC01g35180DBnaC01g35180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUN1]

Coordinates

chrLK032218:-:95302..99544

Molecular Weight (calculated)

68014.5 Da

IEP (calculated)

8.597

GRAVY (calculated)

0.025

Length

598 amino acids

Sequence
(BLAST)

001: MRSSISSGSA SITKRFLLYK HRLHIPNPVT PPSSRLCGSR AFSNHRDTLR SDLHNLHLNE ALDLFARMSH SRPLPSLGDF TRLLTAIAAM EDEEERYDVV
101: VSLFDQMRRI GVSPLLYTCN IVINSLCQSS RTYYTAFAFL GKMLKLGFEP DVFTFTSLLG GLCNRNRVDD AVALFVKMVE IGCRPNVVTY TSLIHCLCKN
201: RHVDHAVELF NQMERDGVRA NVVTYNSLVK CLCDCGRWGH AALLLRDMMK RRIGPNVITF SALIDAFVKA GKVLDAVELY DLMKEMSIEP NVFTYNSLIN
301: GFCKHRRLEE AMRMLYWMER KGCVPDIVTY TTLIHGFCKS KRVDDGVRLF NEMSLKGLAA NTVTYTVFIQ GYCLVGKPVV AQDVFNQMGF SHNAPPDIRT
401: YNVLLDGLCC NGKVEKALMI FEYMRKRDMD VSIVTYTIVI QGMCKVGKVE DAFDLFCSLF SKGMKPNVVT YTTMITGFCR RGLIHEADAL FRKMKQDGFL
501: PNERDTQVIV YIRCSLDLPY LDSYMSSVMI HGMCKVGKVE DAFDLFCSLF SKGMKPTVVT YTTMITRFCR RGLIHEADAL FRKMKQDGFL PNERVIEL

Best Arabidopsis Sequence Match ( AT3G16710.1 )
(BLAST)

001: MRRSIATGFA SIVKGFHLHS HRHRLQISNP RTAASLSLCG FCFWIRAFSS YRKILRNGLH NLQFNDALDL FTRMVHSRPL PSIIDFTRLL SVIAKMNRYD
101: VVISLFEQMQ ILGIPPLLCT CNIVMHCVCL SSQPCRASCF LGKMMKLGFE PDLVTFTSLL NGYCHWNRIE DAIALFDQIL GMGFKPNVVT YTTLIRCLCK
201: NRHLNHAVEL FNQMGTNGSR PNVVTYNALV TGLCEIGRWG DAAWLLRDMM KRRIEPNVIT FTALIDAFVK VGKLMEAKEL YNVMIQMSVY PDVFTYGSLI
301: NGLCMYGLLD EARQMFYLME RNGCYPNEVI YTTLIHGFCK SKRVEDGMKI FYEMSQKGVV ANTITYTVLI QGYCLVGRPD VAQEVFNQMS SRRAPPDIRT
401: YNVLLDGLCC NGKVEKALMI FEYMRKREMD INIVTYTIII QGMCKLGKVE DAFDLFCSLF SKGMKPNVIT YTTMISGFCR RGLIHEADSL FKKMKEDGFL
501: PNESVYK

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LUR2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.