CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016762.1-P	Field mustard	mitochondrion	98.85	98.85
CDY31271	Canola	mitochondrion	74.79	93.42
CDY31272	Canola	mitochondrion	70.02	74.82
CDY51169	Canola	cytosol	51.57	74.0
CDY26588	Canola	extracellular	37.56	70.37
CDY16110	Canola	extracellular	47.45	70.24
CDY00489	Canola	mitochondrion	67.55	69.97
CDY26607	Canola	cytosol	51.57	68.49
CDY33753	Canola	mitochondrion	49.92	68.24
AT1G12620.1	Thale cress	cytosol, mitochondrion	69.36	67.79
CDY34870	Canola	mitochondrion	31.63	66.9
CDX71969	Canola	cytosol	43.49	66.67
CDY16031	Canola	cytosol	34.1	66.56
CDY26565	Canola	mitochondrion	61.94	66.08
CDY33797	Canola	mitochondrion	55.68	66.02
CDY35831	Canola	mitochondrion	55.85	65.83
AT1G12300.1	Thale cress	mitochondrion	68.86	65.62
CDY16002	Canola	cytosol	33.44	65.27
CDY26589	Canola	cytosol	7.41	65.22
CDY26593	Canola	cytosol	65.24	65.02
AT3G22470.1	Thale cress	cytosol, mitochondrion	66.06	64.78
CDY16003	Canola	cytosol, plastid	41.02	63.68
CDY16032	Canola	mitochondrion	42.5	63.24
AT1G12775.1	Thale cress	cytosol, mitochondrion	66.39	62.58
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	56.34	62.3
CDY16033	Canola	cytosol	15.16	61.33
CDY34375	Canola	mitochondrion	45.47	53.38
CDY34688	Canola	cytosol	31.14	52.21
CDY46909	Canola	mitochondrion	24.71	51.37
CDY09968	Canola	cytosol	24.55	50.68
CDY06217	Canola	cytosol	24.22	50.17
CDY03257	Canola	cytosol	31.96	49.62
CDY39810	Canola	cytosol	31.8	49.36
CDY66358	Canola	mitochondrion	31.63	49.23
CDY15970	Canola	cytosol	7.58	48.94
CDY46912	Canola	mitochondrion	39.21	48.18
CDY08386	Canola	cytosol	35.26	48.09
CDX69436	Canola	plastid	38.88	47.39
CDY25492	Canola	mitochondrion	38.22	47.25
CDX67634	Canola	cytosol	32.78	47.04
CDY49646	Canola	mitochondrion	38.55	46.71
CDY65983	Canola	mitochondrion	32.29	46.45
VIT_12s0028g02320.t01	Wine grape	mitochondrion	35.42	45.07
CDY34969	Canola	mitochondrion	37.23	44.66
CDX68679	Canola	cytosol	8.4	44.35
CDY25522	Canola	mitochondrion, plastid	32.45	44.07
CDY47835	Canola	mitochondrion	31.47	43.71
CDY46394	Canola	mitochondrion	34.6	43.66
CDY48949	Canola	mitochondrion	34.1	43.04
CDX81633	Canola	extracellular, golgi, plasma membrane	63.26	42.24
CDY25519	Canola	mitochondrion, plastid	44.32	42.1
VIT_14s0081g00270.t01	Wine grape	plastid	39.54	41.38
CDY29251	Canola	mitochondrion	33.44	40.04
Solyc06g007280.2.1	Tomato	cytosol	16.8	40.0
VIT_14s0081g00120.t01	Wine grape	plastid	38.22	39.79
VIT_14s0081g00110.t01	Wine grape	cytosol	31.63	39.1
CDX89301	Canola	plastid	33.94	38.5
CDY28348	Canola	mitochondrion, plastid	37.73	38.29
KRH70370	Soybean	cytosol	34.27	38.24
KRH49698	Soybean	cytosol	35.26	37.54
Solyc06g005220.2.1	Tomato	cytosol	25.04	37.44
KRH75063	Soybean	mitochondrion, plastid	36.9	37.09
KRH75045	Soybean	mitochondrion	36.24	36.85
PGSC0003DMT400008757	Potato	cytosol	29.98	36.55
KRH42744	Soybean	mitochondrion	36.74	36.5
VIT_14s0030g02280.t01	Wine grape	plastid	33.61	36.36
PGSC0003DMT400008759	Potato	cytosol	19.11	36.36
CDX68680	Canola	mitochondrion	27.68	36.36
KRH75048	Soybean	mitochondrion	36.41	36.35
KRH58843	Soybean	nucleus	36.57	36.33
PGSC0003DMT400025074	Potato	cytosol	32.95	36.23
CDY66357	Canola	cytosol	22.57	36.15
PGSC0003DMT400052977	Potato	cytosol	23.06	35.99
Solyc06g007300.1.1	Tomato	extracellular	34.93	35.81
KRH38755	Soybean	mitochondrion	34.76	35.52
Solyc06g007810.1.1	Tomato	cytosol	15.65	35.45
PGSC0003DMT400008760	Potato	mitochondrion	34.1	35.32
VIT_14s0081g00280.t01	Wine grape	mitochondrion	36.9	35.05
PGSC0003DMT400025087	Potato	endoplasmic reticulum	28.5	34.95
PGSC0003DMT400056663	Potato	plastid	33.44	34.52
KRH09256	Soybean	mitochondrion	31.63	34.35
PGSC0003DMT400052971	Potato	mitochondrion	33.28	34.06
PGSC0003DMT400056665	Potato	mitochondrion	32.95	33.96
CDY31277	Canola	plastid	53.38	33.79
Solyc06g007740.1.1	Tomato	cytosol	32.78	33.73
PGSC0003DMT400025067	Potato	cytosol	26.36	33.61
PGSC0003DMT400053185	Potato	mitochondrion	32.13	33.05
PGSC0003DMT400053556	Potato	mitochondrion	24.71	32.68
CDY34370	Canola	cytosol	43.99	32.52
PGSC0003DMT400053182	Potato	cytosol	30.64	31.05
VIT_14s0030g02260.t01	Wine grape	cytosol	22.08	30.25
PGSC0003DMT400015298	Potato	mitochondrion	30.31	30.16
PGSC0003DMT400015293	Potato	mitochondrion	30.31	30.16
Solyc04g080120.1.1	Tomato	extracellular	30.31	30.07
CDY34680	Canola	cytosol	29.0	19.3
CDY21063	Canola	plastid	4.61	5.1

Protein Annotations

EnsemblPlants:CDY68929	EnsemblPlantsGene:GSBRNA2T00081437001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	ProteinID:CDY68929	ProteinID:CDY68929.1	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI0004EE3D0A	UniProt:A0A078JQ59	MapMan:35.1	:	:

Description

BnaA08g31580DBnaA08g31580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQ59]

Coordinates

chrLK038283:+:1183..3006

Molecular Weight (calculated)

67837.1 Da

IEP (calculated)

8.027

GRAVY (calculated)

-0.029

Length

607 amino acids

Sequence
(BLAST)

001: MKRFFQTRLL LQTGTLFLSE RASSTLSKGK KVSYKERLRS GVVDIKKDDA VELFQSMIVS RPLPTIIHFS RLFSSLAKTR QYELVLSLSK QMELQGVAHN
101: NYTLNIMINC FSRRRKLGFA FSAMAKMLKL GYEPDTVTFS TLVNGLCLEG RVSEAVALVD RMVGPNLVTL NTLVNGLCLN GKVYEAVALV DRMVENGCQP
201: DQFTYGPILN RICKSGNTSL ALDLLRKMED RKVKPEAVTY NMIIDSLCKD GSLEDALNLF NEMERKGIKA NVITYNTLIS NFCNAGRWDE AAQLLRDMIT
301: RGITPNVITF SALIDIFVKE GKHVEAKELY NEMIARGIDP DTVTYNSLIY GLCMEKRLDE ANQMMDVMVS KGCSPDSVTY NIIINGYCKA KRVEDGLKLF
401: RKMSLREVVS YNTLVQGFCL SRKIEVAQEL FQEMVSRGVD PDTVTYNILV DGLCENGKLE KALEIFEDLH KSEVELDIGI FNIIIHGMCN GSMIDKAWEL
501: FSSLAHKGVK ADVKTYTIMI GGLCKKGSLS EADMLLRKME EDGIAPNGCT YNTLIRAHLG GSGVATSVKL IEEMKRFGFA ADASTMKMVI DMLSDGRLNK
601: NFLGMLS

Best Arabidopsis Sequence Match ( AT1G12620.1 )
(BLAST)

001: MRGLIQTRLL ETGTLRTALF LSCYGRVFSS VSDGKGKVSY RERLRSGIVD IKEDDAVDLF QEMTRSRPRP RLIDFSRLFS VVARTKQYDL VLDLCKQMEL
101: KGIAHNLYTL SIMINCCCRC RKLSLAFSAM GKIIKLGYEP DTVTFSTLIN GLCLEGRVSE ALELVDRMVE MGHKPTLITL NALVNGLCLN GKVSDAVLLI
201: DRMVETGFQP NEVTYGPVLK VMCKSGQTAL AMELLRKMEE RKIKLDAVKY SIIIDGLCKD GSLDNAFNLF NEMEIKGFKA DIIIYTTLIR GFCYAGRWDD
301: GAKLLRDMIK RKITPDVVAF SALIDCFVKE GKLREAEELH KEMIQRGISP DTVTYTSLID GFCKENQLDK ANHMLDLMVS KGCGPNIRTF NILINGYCKA
401: NLIDDGLELF RKMSLRGVVA DTVTYNTLIQ GFCELGKLEV AKELFQEMVS RRVRPDIVSY KILLDGLCDN GEPEKALEIF EKIEKSKMEL DIGIYNIIIH
501: GMCNASKVDD AWDLFCSLPL KGVKPDVKTY NIMIGGLCKK GSLSEADLLF RKMEEDGHSP NGCTYNILIR AHLGEGDATK SAKLIEEIKR CGFSVDASTV
601: KMVVDMLSDG RLKKSFLDML S

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12620 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASZ8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.