CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46909	Canola	mitochondrion	45.65	59.25
CDY46912	Canola	mitochondrion	60.42	46.36
CDY09968	Canola	cytosol	35.62	45.92
CDY06217	Canola	cytosol	35.09	45.39
CDY66358	Canola	mitochondrion	43.27	42.05
AT1G62680.2	Thale cress	plastid	49.34	34.12
CDY03257	Canola	cytosol	35.09	34.02
CDY39810	Canola	cytosol	34.3	33.25
CDY51169	Canola	cytosol	36.68	32.86
CDX67634	Canola	cytosol	35.62	31.91
CDY16033	Canola	cytosol	12.4	31.33
CDY16002	Canola	cytosol	25.07	30.55
CDY16031	Canola	cytosol	24.54	29.9
CDY08386	Canola	cytosol	35.09	29.89
CDY34688	Canola	cytosol	28.5	29.83
CDY16110	Canola	extracellular	31.13	28.78
CDY26607	Canola	cytosol	34.56	28.67
CDY46394	Canola	mitochondrion	35.62	28.07
CDY48949	Canola	mitochondrion	35.36	27.86
CDY26588	Canola	extracellular	23.48	27.47
CDY25492	Canola	mitochondrion	34.83	26.88
CDY49646	Canola	mitochondrion	34.56	26.15
Solyc06g007810.1.1	Tomato	cytosol	18.47	26.12
CDX68679	Canola	cytosol	7.92	26.09
CDY34969	Canola	mitochondrion	34.83	26.09
CDX69436	Canola	plastid	33.77	25.7
PGSC0003DMT400008759	Potato	cytosol	20.84	24.76
CDX71969	Canola	cytosol	25.86	24.75
CDY47835	Canola	mitochondrion	28.23	24.49
CDY65983	Canola	mitochondrion	27.18	24.41
CDY34680	Canola	cytosol	58.58	24.34
PGSC0003DMT400052977	Potato	cytosol	24.8	24.16
CDY34375	Canola	mitochondrion	32.19	23.6
CDY28348	Canola	mitochondrion, plastid	37.2	23.58
Solyc06g005220.2.1	Tomato	cytosol	24.27	22.66
CDY26593	Canola	cytosol	36.41	22.66
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	32.72	22.59
CDY68929	Canola	mitochondrion	36.15	22.57
CDY31271	Canola	mitochondrion	28.76	22.43
CDY33753	Canola	mitochondrion	26.12	22.3
CDY29251	Canola	mitochondrion	29.82	22.29
CDY31272	Canola	mitochondrion	33.25	22.18
VIT_14s0030g02260.t01	Wine grape	cytosol	25.86	22.12
CDX89301	Canola	plastid	31.13	22.06
CDY26589	Canola	cytosol	3.96	21.74
Solyc06g007280.2.1	Tomato	cytosol	13.98	20.78
CDY33797	Canola	mitochondrion	27.97	20.7
CDY00489	Canola	mitochondrion	31.66	20.48
CDY35831	Canola	mitochondrion	27.44	20.19
VIT_14s0081g00110.t01	Wine grape	cytosol	26.12	20.16
CDY26565	Canola	mitochondrion	29.02	19.33
PGSC0003DMT400025067	Potato	cytosol	24.27	19.33
VIT_12s0028g02320.t01	Wine grape	mitochondrion	24.27	19.29
PGSC0003DMT400025087	Potato	endoplasmic reticulum	24.8	18.99
CDY25522	Canola	mitochondrion, plastid	21.9	18.57
PGSC0003DMT400025074	Potato	cytosol	26.12	17.93
VIT_14s0081g00120.t01	Wine grape	plastid	27.18	17.67
KRH70370	Soybean	cytosol	25.33	17.65
VIT_14s0081g00270.t01	Wine grape	plastid	26.91	17.59
CDY25519	Canola	mitochondrion, plastid	29.29	17.37
KRH09256	Soybean	mitochondrion	25.59	17.35
KRH49698	Soybean	cytosol	25.86	17.19
VIT_14s0030g02280.t01	Wine grape	plastid	24.8	16.76
Solyc06g007300.1.1	Tomato	extracellular	25.86	16.55
KRH38755	Soybean	mitochondrion	25.86	16.5
Solyc06g007740.1.1	Tomato	cytosol	25.59	16.44
KRH75045	Soybean	mitochondrion	25.86	16.42
VIT_14s0081g00280.t01	Wine grape	mitochondrion	26.91	15.96
KRH75048	Soybean	mitochondrion	25.59	15.95
KRH42744	Soybean	mitochondrion	25.59	15.88
KRH58843	Soybean	nucleus	25.59	15.88
PGSC0003DMT400008757	Potato	cytosol	20.84	15.86
PGSC0003DMT400052971	Potato	mitochondrion	24.8	15.85
PGSC0003DMT400056663	Potato	plastid	24.54	15.82
CDY16032	Canola	mitochondrion	16.89	15.69
PGSC0003DMT400056665	Potato	mitochondrion	24.27	15.62
KRH75063	Soybean	mitochondrion, plastid	24.8	15.56
PGSC0003DMT400015293	Potato	mitochondrion	24.8	15.41
PGSC0003DMT400015298	Potato	mitochondrion	24.8	15.41
PGSC0003DMT400053556	Potato	mitochondrion	18.47	15.25
PGSC0003DMT400008760	Potato	mitochondrion	23.48	15.19
Solyc04g080120.1.1	Tomato	extracellular	24.27	15.03
PGSC0003DMT400053185	Potato	mitochondrion	23.22	14.92
PGSC0003DMT400053182	Potato	cytosol	22.16	14.02
CDY34370	Canola	cytosol	30.34	14.01
CDY15970	Canola	cytosol	3.43	13.83
CDX81633	Canola	extracellular, golgi, plasma membrane	30.34	12.65
CDY34870	Canola	mitochondrion	9.23	12.2
CDX68680	Canola	mitochondrion	13.19	10.82
CDY31277	Canola	plastid	24.54	9.7
CDY16003	Canola	cytosol, plastid	8.44	8.18
CDY21063	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY66357	EnsemblPlantsGene:GSBRNA2T00053449001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1649
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY66357	ProteinID:CDY66357.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0004EE478D	UniProt:A0A078JLU4	MapMan:35.1	:

Description

BnaCnng50510DBnaCnng50510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLU4]

Coordinates

chrLK035219:-:1969..8745

Molecular Weight (calculated)

42262.4 Da

IEP (calculated)

4.750

GRAVY (calculated)

0.088

Length

379 amino acids

Sequence
(BLAST)

001: MRLRLRAELF LASFAVREES THSEERSDLF EEGILGVLRD GLCNLGRWSD AAGLLSHFIK REISPNVITS TALVDAFVKN GKVLEAKELY EEMIRMSIDP
101: DIVIYSSLIN GLCMQDRVDE ASEMFGLMVR RGCSPDVVSY NTLINGLCKA KRVEDGMRLV REMSERGLMN SPDIWTYNIL LGGLCDNGEV EKALVMFEDL
201: QKSEMEVDIV TYTTIIHGMC KAGKVEDAWG LFCSLSVKVV KPDVVAYNTM LSGLCRDGLV LNDGKLCLRD GDITVSADVI KELLTRATSE GRFLLSLALI
301: SIASSNLFLI LTLELGYAVQ VLRNRASDSR PMRLRLRAEL FLASFAVREE STHSEERSNL FEEGILGVLR DVCKTDVFG

Best Arabidopsis Sequence Match ( AT1G62680.1 )
(BLAST)

001: MQRSIAMTAK RFLHRNLLEN GKPRTASSPS FSHCSSCRCW VRASSSVSGG DLRERLSKTR LRDIKLNDAI DLFSDMVKSR PFPSIVDFNR LLSAIVKLKK
101: YDVVISLGKK MEVLGIRNDL YTFNIVINCF CCCFQVSLAL SILGKMLKLG YEPDRVTIGS LVNGFCRRNR VSDAVSLVDK MVEIGYKPDI VAYNAIIDSL
201: CKTKRVNDAF DFFKEIERKG IRPNVVTYTA LVNGLCNSSR WSDAARLLSD MIKKKITPNV ITYSALLDAF VKNGKVLEAK ELFEEMVRMS IDPDIVTYSS
301: LINGLCLHDR IDEANQMFDL MVSKGCLADV VSYNTLINGF CKAKRVEDGM KLFREMSQRG LVSNTVTYNT LIQGFFQAGD VDKAQEFFSQ MDFFGISPDI
401: WTYNILLGGL CDNGELEKAL VIFEDMQKRE MDLDIVTYTT VIRGMCKTGK VEEAWSLFCS LSLKGLKPDI VTYTTMMSGL CTKGLLHEVE ALYTKMKQEG
501: LMKNDCTLSD GDITLSAELI KKMLSCGYAP SLLKDIKSGV CKKALSLL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q3ECK2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.