CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34870	Canola	mitochondrion	45.78	62.37
CDY16032	Canola	mitochondrion	58.57	56.13
CDY26565	Canola	mitochondrion	79.03	54.31
CDY26588	Canola	extracellular	37.85	45.68
CDY31271	Canola	mitochondrion	55.5	44.65
CDY00489	Canola	mitochondrion	65.98	44.03
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	60.1	42.81
CDY33797	Canola	mitochondrion	55.75	42.58
CDY35831	Canola	mitochondrion	54.22	41.16
CDY68929	Canola	mitochondrion	63.68	41.02
CDY16002	Canola	cytosol	31.97	40.19
CDY26607	Canola	cytosol	46.8	40.04
CDY31272	Canola	mitochondrion	56.52	38.91
CDY16031	Canola	cytosol	30.95	38.91
AT1G12300.1	Thale cress	mitochondrion	63.17	38.78
CDY26593	Canola	cytosol	60.1	38.59
AT1G12620.1	Thale cress	cytosol, mitochondrion	60.61	38.16
AT3G22470.1	Thale cress	cytosol, mitochondrion	59.85	37.8
CDY33753	Canola	mitochondrion	41.94	36.94
CDY16110	Canola	extracellular	38.36	36.59
AT1G12775.1	Thale cress	cytosol, mitochondrion	59.59	36.18
CDX71969	Canola	cytosol	35.04	34.6
CDY51169	Canola	cytosol	33.5	30.97
CDX81633	Canola	extracellular, golgi, plasma membrane	69.82	30.03
CDY34375	Canola	mitochondrion	39.64	29.98
CDY25522	Canola	mitochondrion, plastid	33.76	29.53
CDX68680	Canola	mitochondrion	32.74	27.71
CDY65983	Canola	mitochondrion	29.41	27.25
VIT_12s0028g02320.t01	Wine grape	mitochondrion	31.97	26.21
Solyc06g007280.2.1	Tomato	cytosol	16.11	24.71
CDY25519	Canola	mitochondrion, plastid	40.15	24.57
CDY03257	Canola	cytosol	24.3	24.3
CDY39810	Canola	cytosol	24.04	24.04
CDX69436	Canola	plastid	29.92	23.49
CDY25492	Canola	mitochondrion	29.41	23.42
CDY46912	Canola	mitochondrion	29.41	23.28
CDX67634	Canola	cytosol	25.06	23.17
CDY49646	Canola	mitochondrion	29.67	23.15
CDY34688	Canola	cytosol	21.23	22.93
CDY46394	Canola	mitochondrion	28.13	22.87
CDY48949	Canola	mitochondrion	27.37	22.25
KRH42744	Soybean	mitochondrion	34.02	21.77
VIT_14s0081g00270.t01	Wine grape	plastid	32.23	21.72
KRH58843	Soybean	nucleus	33.76	21.6
CDY08386	Canola	cytosol	24.3	21.35
CDY66358	Canola	mitochondrion	21.23	21.28
VIT_14s0030g02280.t01	Wine grape	plastid	30.43	21.21
CDY34969	Canola	mitochondrion	27.37	21.15
CDY47835	Canola	mitochondrion	23.53	21.05
KRH70370	Soybean	cytosol	29.16	20.96
Solyc06g007740.1.1	Tomato	cytosol	31.46	20.85
PGSC0003DMT400025074	Potato	cytosol	29.41	20.83
VIT_14s0081g00120.t01	Wine grape	plastid	30.69	20.58
Solyc06g007300.1.1	Tomato	extracellular	30.95	20.44
CDY29251	Canola	mitochondrion	26.34	20.32
KRH49698	Soybean	cytosol	29.16	20.0
PGSC0003DMT400056665	Potato	mitochondrion	29.67	19.69
PGSC0003DMT400008760	Potato	mitochondrion	29.41	19.62
PGSC0003DMT400053556	Potato	mitochondrion	23.02	19.61
PGSC0003DMT400052971	Potato	mitochondrion	29.41	19.39
CDX89301	Canola	plastid	26.34	19.25
KRH75063	Soybean	mitochondrion, plastid	29.67	19.21
PGSC0003DMT400053185	Potato	mitochondrion	28.9	19.15
KRH75045	Soybean	mitochondrion	29.16	19.1
PGSC0003DMT400056663	Potato	plastid	28.64	19.05
KRH38755	Soybean	mitochondrion	28.64	18.86
CDY46909	Canola	mitochondrion	14.07	18.84
VIT_14s0081g00280.t01	Wine grape	mitochondrion	30.69	18.78
CDY34370	Canola	cytosol	39.39	18.76
KRH75048	Soybean	mitochondrion	29.16	18.75
CDY28348	Canola	mitochondrion, plastid	28.64	18.73
PGSC0003DMT400008757	Potato	cytosol	23.53	18.47
PGSC0003DMT400015298	Potato	mitochondrion	28.39	18.2
PGSC0003DMT400015293	Potato	mitochondrion	28.39	18.2
PGSC0003DMT400053182	Potato	cytosol	27.62	18.03
Solyc04g080120.1.1	Tomato	extracellular	28.13	17.97
VIT_14s0081g00110.t01	Wine grape	cytosol	22.25	17.72
CDY31277	Canola	plastid	42.71	17.41
PGSC0003DMT400025087	Potato	endoplasmic reticulum	21.74	17.17
KRH09256	Soybean	mitochondrion	24.3	16.99
PGSC0003DMT400025067	Potato	cytosol	19.69	16.18
Solyc06g005220.2.1	Tomato	cytosol	16.62	16.01
CDY06217	Canola	cytosol	9.97	13.31
CDY09968	Canola	cytosol	9.97	13.27
CDY26589	Canola	cytosol	2.3	13.04
PGSC0003DMT400052977	Potato	cytosol	12.02	12.08
CDY66357	Canola	cytosol	8.18	8.44
CDY15970	Canola	cytosol	1.79	7.45
CDY16033	Canola	cytosol	2.56	6.67
VIT_14s0030g02260.t01	Wine grape	cytosol	6.39	5.64
PGSC0003DMT400008759	Potato	cytosol	4.35	5.33
CDY34680	Canola	cytosol	11.51	4.93
CDY21063	Canola	plastid	6.65	4.74
Solyc06g007810.1.1	Tomato	cytosol	1.53	2.24
CDX68679	Canola	cytosol	0.26	0.87

Protein Annotations

EnsemblPlants:CDY16003	EnsemblPlantsGene:GSBRNA2T00090389001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PFAM:PF12854	PFAM:PF13041
PFscan:PS51375	ProteinID:CDY16003	ProteinID:CDY16003.1	SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0004EDF8CB
UniProt:A0A078FUG1	MapMan:35.1	:	:	:	:

Description

BnaC08g41200DBnaC08g41200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUG1]

Coordinates

chrLK032060:+:159237..163066

Molecular Weight (calculated)

43327.5 Da

IEP (calculated)

8.699

GRAVY (calculated)

0.076

Length

391 amino acids

Sequence
(BLAST)

001: MKRCGFSANA STIKIVMDIF EEKKQTMLCR RLVLVSRILS SPSGGTLTTP LLSGGSSDRK MSSSSYKERL RSGIIGIKKD DAVTLFQSMI QSRPLPTVVD
101: FSRLFSGIAR TKQYDLVLSL CNQMELQGIA HNNYTLCIMI NCFCRRHNLG FAFSVMGKMF KLGYEPNTIT FSTLINGLCL EGRVSEAVEL VDHMVDMKVI
201: PNLIILNTIV NGLCLQDRLS EAMSLIDRML ANGCQPDAVT YGPVLNRMCK SGNTASALDL LGKMELRKIK PQVVTYNIII DSLCKDGSLE DALCLFNEME
301: TKGIKANVIT YTSLIGGFCS AGRWDDGAQL LRDMITRGVT PNVVTFNALI DSFVKEGQLT EAKKLYNEMI TRGTNMLLDG RMKKSFLDML S

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.