Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- plastid 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G62670.1 | CDX89318 | AT4G26630.1 | 25387881 |
| AT1G62670.1 | CDX94304 | AT4G26630.1 | 25387881 |
| AT1G62670.1 | CDX97358 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26589 | Canola | cytosol | 10.5 | 55.07 |
| CDY34375 | Canola | mitochondrion | 72.65 | 50.87 |
| AT1G63330.2 | Thale cress | cytosol | 73.48 | 47.59 |
| CDY16110 | Canola | extracellular | 50.83 | 44.88 |
| CDY16033 | Canola | cytosol | 18.51 | 44.67 |
| AT1G63070.1 | Thale cress | mitochondrion | 70.44 | 43.22 |
| AT1G62590.1 | Thale cress | mitochondrion | 74.03 | 42.27 |
| AT1G63080.3 | Thale cress | mitochondrion | 71.55 | 42.18 |
| AT1G62930.1 | Thale cress | plastid | 73.2 | 42.13 |
| AT1G62910.1 | Thale cress | mitochondrion | 72.93 | 41.77 |
| AT1G62670.1 | Thale cress | mitochondrion | 72.38 | 41.59 |
| AT1G63130.1 | Thale cress | mitochondrion | 72.38 | 41.59 |
| CDY25522 | Canola | mitochondrion, plastid | 51.1 | 41.39 |
| CDY51169 | Canola | cytosol | 48.07 | 41.13 |
| AT1G63150.1 | Thale cress | mitochondrion | 70.17 | 40.38 |
| AT1G63400.1 | Thale cress | cytosol, plastid | 61.05 | 38.3 |
| CDY09968 | Canola | cytosol | 30.66 | 37.76 |
| CDY26588 | Canola | extracellular | 33.7 | 37.65 |
| CDY06217 | Canola | cytosol | 30.39 | 37.54 |
| CDY15970 | Canola | cytosol | 9.67 | 37.23 |
| CDY16002 | Canola | cytosol | 31.49 | 36.66 |
| CDY16031 | Canola | cytosol | 31.22 | 36.33 |
| CDY35831 | Canola | mitochondrion | 51.1 | 35.92 |
| AT1G62914.1 | Thale cress | mitochondrion | 51.93 | 35.61 |
| CDX71969 | Canola | cytosol | 38.95 | 35.61 |
| CDY33753 | Canola | mitochondrion | 43.37 | 35.36 |
| CDY26607 | Canola | cytosol | 44.48 | 35.23 |
| CDY39810 | Canola | cytosol | 37.29 | 34.53 |
| CDY46909 | Canola | mitochondrion | 27.07 | 33.56 |
| CDY03257 | Canola | cytosol | 36.19 | 33.5 |
| CDX68679 | Canola | cytosol | 10.22 | 32.17 |
| CDX67634 | Canola | cytosol | 36.74 | 31.44 |
| Solyc06g007810.1.1 | Tomato | cytosol | 23.2 | 31.34 |
| CDY31272 | Canola | mitochondrion | 48.9 | 31.16 |
| CDY68929 | Canola | mitochondrion | 52.21 | 31.14 |
| CDY26565 | Canola | mitochondrion | 48.34 | 30.76 |
| CDY00489 | Canola | mitochondrion | 49.17 | 30.38 |
| PGSC0003DMT400052977 | Potato | cytosol | 31.77 | 29.56 |
| CDY26593 | Canola | cytosol | 49.17 | 29.23 |
| CDY33797 | Canola | mitochondrion | 40.33 | 28.52 |
| CDY66357 | Canola | cytosol | 29.83 | 28.5 |
| CDY08386 | Canola | cytosol | 34.81 | 28.31 |
| PGSC0003DMT400008759 | Potato | cytosol | 24.86 | 28.21 |
| CDY31271 | Canola | mitochondrion | 37.85 | 28.19 |
| CDY46394 | Canola | mitochondrion | 36.74 | 27.65 |
| CDY25492 | Canola | mitochondrion | 37.29 | 27.49 |
| VIT_14s0081g00110.t01 | Wine grape | cytosol | 37.29 | 27.49 |
| CDY48949 | Canola | mitochondrion | 36.19 | 27.23 |
| CDY16026 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole | 41.16 | 27.14 |
| CDY46912 | Canola | mitochondrion | 37.02 | 27.13 |
| Solyc06g005220.2.1 | Tomato | cytosol | 30.39 | 27.09 |
| CDY34969 | Canola | mitochondrion | 37.57 | 26.88 |
| CDY65983 | Canola | mitochondrion | 31.22 | 26.78 |
| CDX69436 | Canola | plastid | 36.46 | 26.51 |
| CDY49646 | Canola | mitochondrion | 35.91 | 25.95 |
| VIT_12s0028g02320.t01 | Wine grape | mitochondrion | 32.87 | 24.95 |
| Solyc06g007280.2.1 | Tomato | cytosol | 17.13 | 24.31 |
| VIT_14s0081g00270.t01 | Wine grape | plastid | 38.67 | 24.14 |
| PGSC0003DMT400008757 | Potato | cytosol | 32.87 | 23.9 |
| PGSC0003DMT400025067 | Potato | cytosol | 31.22 | 23.74 |
| VIT_14s0081g00120.t01 | Wine grape | plastid | 37.85 | 23.5 |
| CDY25519 | Canola | mitochondrion, plastid | 41.16 | 23.32 |
| CDY28348 | Canola | mitochondrion, plastid | 38.4 | 23.24 |
| PGSC0003DMT400025087 | Potato | endoplasmic reticulum | 31.77 | 23.23 |
| CDY66358 | Canola | mitochondrion | 24.86 | 23.08 |
| CDY47835 | Canola | mitochondrion | 27.35 | 22.65 |
| PGSC0003DMT400025074 | Potato | cytosol | 34.53 | 22.64 |
| VIT_14s0030g02260.t01 | Wine grape | cytosol | 27.07 | 22.12 |
| Solyc06g007300.1.1 | Tomato | extracellular | 35.64 | 21.79 |
| VIT_14s0081g00280.t01 | Wine grape | mitochondrion | 38.4 | 21.75 |
| CDY29251 | Canola | mitochondrion | 30.39 | 21.7 |
| PGSC0003DMT400052971 | Potato | mitochondrion | 35.36 | 21.59 |
| KRH38755 | Soybean | mitochondrion | 35.36 | 21.55 |
| Solyc06g007740.1.1 | Tomato | cytosol | 34.81 | 21.36 |
| CDX89301 | Canola | plastid | 31.49 | 21.31 |
| CDY34870 | Canola | mitochondrion | 16.85 | 21.25 |
| CDY16003 | Canola | cytosol, plastid | 22.93 | 21.23 |
| PGSC0003DMT400008760 | Potato | mitochondrion | 34.25 | 21.16 |
| KRH75045 | Soybean | mitochondrion | 34.81 | 21.11 |
| KRH49698 | Soybean | cytosol | 33.15 | 21.05 |
| KRH70370 | Soybean | cytosol | 31.49 | 20.96 |
| KRH42744 | Soybean | mitochondrion | 35.36 | 20.95 |
| KRH75048 | Soybean | mitochondrion | 34.53 | 20.56 |
| PGSC0003DMT400053182 | Potato | cytosol | 33.98 | 20.53 |
| KRH58843 | Soybean | nucleus | 34.53 | 20.46 |
| KRH75063 | Soybean | mitochondrion, plastid | 33.7 | 20.2 |
| KRH09256 | Soybean | mitochondrion | 30.94 | 20.04 |
| PGSC0003DMT400056665 | Potato | mitochondrion | 32.32 | 19.86 |
| PGSC0003DMT400053185 | Potato | mitochondrion | 32.32 | 19.83 |
| PGSC0003DMT400056663 | Potato | plastid | 31.77 | 19.56 |
| PGSC0003DMT400015293 | Potato | mitochondrion | 32.87 | 19.51 |
| PGSC0003DMT400015298 | Potato | mitochondrion | 32.87 | 19.51 |
| CDX81633 | Canola | extracellular, golgi, plasma membrane | 48.9 | 19.47 |
| VIT_14s0030g02280.t01 | Wine grape | plastid | 30.11 | 19.43 |
| CDY34370 | Canola | cytosol | 42.82 | 18.88 |
| Solyc04g080120.1.1 | Tomato | extracellular | 31.77 | 18.79 |
| CDY16032 | Canola | mitochondrion | 19.61 | 17.4 |
| PGSC0003DMT400053556 | Potato | mitochondrion | 20.44 | 16.12 |
| CDY31277 | Canola | plastid | 40.88 | 15.43 |
| CDX68680 | Canola | mitochondrion | 19.61 | 15.37 |
| CDY34680 | Canola | cytosol | 37.29 | 14.8 |
| CDY21063 | Canola | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY34688 | EnsemblPlantsGene:GSBRNA2T00057196001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF955 |
| PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 | ProteinID:CDY34688 | ProteinID:CDY34688.1 | SUPFAM:SSF48452 |
| TIGRFAMs:TIGR00756 | UniParc:UPI0004EF2985 | UniProt:A0A078HD19 | MapMan:35.1 | : | : |
Description
BnaC04g19950DBnaC04g19950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HD19]
Coordinates
chrLK032339:+:333493..334743
Molecular Weight (calculated)
40375.1 Da
IEP (calculated)
5.761
GRAVY (calculated)
-0.011
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYHPNTVTF TTLIHGLFLN DKASEMVALV DRMVAKGCQR NLVTYGAVVN GLCKRGEIDL ALYILKWMDN AKIEVNVVIY NTLIDGLCKY KHVDDALDLF
101: SEMENKGVRP NVFTFIALVD AFAKQGKILE AEKLYEEIIA RSIDPDVVTC NTLIKGFCKS KGVENGMELF REISQRGLVG NTITYNTLIQ GFCQVGDCDN
201: AQEIFKRMVS CGIPPDIWTY SILLDGFCKN GKLDKALVIF EDLQKPGKVE AGWDLFCSLS LKGVKPDVVT YNTMILGLCN NKLKHEAYAL LRKMKQDGSL
301: LDDRTYNALI RAHLEDGDKA ASAEFIKEMR SGGFTGDAST FGLVTNMLQD GRLDKSFLDM LF
101: SEMENKGVRP NVFTFIALVD AFAKQGKILE AEKLYEEIIA RSIDPDVVTC NTLIKGFCKS KGVENGMELF REISQRGLVG NTITYNTLIQ GFCQVGDCDN
201: AQEIFKRMVS CGIPPDIWTY SILLDGFCKN GKLDKALVIF EDLQKPGKVE AGWDLFCSLS LKGVKPDVVT YNTMILGLCN NKLKHEAYAL LRKMKQDGSL
301: LDDRTYNALI RAHLEDGDKA ASAEFIKEMR SGGFTGDAST FGLVTNMLQD GRLDKSFLDM LF
001: MRISISSVVS STTSRIVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS GDYREILRNG LHDMKLDDAI GLFGGMVKSR PLPSIVEFNK LLSAIAKMKK
101: FDVVISLGEK MQRLEIVHGL YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL
201: FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD TDLALNLLNK MEAAKIEADV VIFNTIIDSL CKYRHVDDAL NLFKEMETKG IRPNVVTYSS
301: LISCLCSYGR WSDASQLLSD MIEKKINPNL VTFNALIDAF VKEGKFVEAE KLYDDMIKRS IDPDIFTYNS LVNGFCMHDR LDKAKQMFEF MVSKDCFPDV
401: VTYNTLIKGF CKSKRVEDGT ELFREMSHRG LVGDTVTYTT LIQGLFHDGD CDNAQKVFKQ MVSDGVPPDI MTYSILLDGL CNNGKLEKAL EVFDYMQKSE
501: IKLDIYIYTT MIEGMCKAGK VDDGWDLFCS LSLKGVKPNV VTYNTMISGL CSKRLLQEAY ALLKKMKEDG PLPNSGTYNT LIRAHLRDGD KAASAELIRE
601: MRSCRFVGDA STIGLVANML HDGRLDKSFL DMLS
101: FDVVISLGEK MQRLEIVHGL YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL
201: FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD TDLALNLLNK MEAAKIEADV VIFNTIIDSL CKYRHVDDAL NLFKEMETKG IRPNVVTYSS
301: LISCLCSYGR WSDASQLLSD MIEKKINPNL VTFNALIDAF VKEGKFVEAE KLYDDMIKRS IDPDIFTYNS LVNGFCMHDR LDKAKQMFEF MVSKDCFPDV
401: VTYNTLIKGF CKSKRVEDGT ELFREMSHRG LVGDTVTYTT LIQGLFHDGD CDNAQKVFKQ MVSDGVPPDI MTYSILLDGL CNNGKLEKAL EVFDYMQKSE
501: IKLDIYIYTT MIEGMCKAGK VDDGWDLFCS LSLKGVKPNV VTYNTMISGL CSKRLLQEAY ALLKKMKEDG PLPNSGTYNT LIRAHLRDGD KAASAELIRE
601: MRSCRFVGDA STIGLVANML HDGRLDKSFL DMLS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g62590 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD8]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.