CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027726.1-P	Field mustard	mitochondrion	96.57	89.6
CDY08386	Canola	cytosol	77.57	76.18
AT1G64580.1	Thale cress	mitochondrion	68.65	57.36
CDY06217	Canola	cytosol	31.58	47.1
CDY09968	Canola	cytosol	31.58	46.94
CDY66358	Canola	mitochondrion	40.05	44.87
CDY25492	Canola	mitochondrion	50.34	44.81
CDX69436	Canola	plastid	48.51	42.57
CDY03257	Canola	cytosol	37.53	41.94
CDY39810	Canola	cytosol	37.53	41.94
CDY65983	Canola	mitochondrion	40.5	41.94
CDY49646	Canola	mitochondrion	47.83	41.72
CDY46909	Canola	mitochondrion	27.46	41.1
CDX67634	Canola	cytosol	38.9	40.19
CDY46394	Canola	mitochondrion	41.88	38.05
CDY48949	Canola	mitochondrion	41.88	38.05
CDY46912	Canola	mitochondrion	42.79	37.85
CDY34969	Canola	mitochondrion	43.71	37.75
CDY33797	Canola	mitochondrion	40.96	34.96
CDY31271	Canola	mitochondrion	37.76	33.95
CDY28348	Canola	mitochondrion, plastid	46.0	33.61
CDY33753	Canola	mitochondrion	33.87	33.33
CDY00489	Canola	mitochondrion	44.16	32.94
CDY29251	Canola	mitochondrion	37.53	32.35
CDY26565	Canola	mitochondrion	42.11	32.34
CDY34375	Canola	mitochondrion	38.22	32.3
CDY68929	Canola	mitochondrion	43.71	31.47
CDY16031	Canola	cytosol	22.2	31.19
CDY31272	Canola	mitochondrion	40.27	30.99
CDX89301	Canola	plastid	37.76	30.84
CDY26593	Canola	cytosol	42.56	30.54
CDY51169	Canola	cytosol	29.06	30.02
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	36.38	28.96
CDY16032	Canola	mitochondrion	27.0	28.92
CDY16110	Canola	extracellular	27.0	28.78
VIT_12s0028g02320.t01	Wine grape	mitochondrion	31.35	28.72
CDY16002	Canola	cytosol	20.14	28.3
CDY66357	Canola	cytosol	24.49	28.23
CDY26588	Canola	extracellular	20.37	27.47
CDY34688	Canola	cytosol	22.65	27.35
CDY35831	Canola	mitochondrion	32.04	27.18
CDY25522	Canola	mitochondrion, plastid	27.46	26.85
CDY25519	Canola	mitochondrion, plastid	39.13	26.76
VIT_14s0081g00270.t01	Wine grape	plastid	35.47	26.72
CDY26607	Canola	cytosol	27.92	26.7
VIT_14s0081g00120.t01	Wine grape	plastid	35.01	26.24
KRH09256	Soybean	mitochondrion	32.95	25.76
CDY34870	Canola	mitochondrion	16.7	25.44
PGSC0003DMT400008759	Potato	cytosol	18.31	25.08
CDX71969	Canola	cytosol	21.97	24.24
VIT_14s0030g02280.t01	Wine grape	plastid	30.89	24.06
CDY16003	Canola	cytosol, plastid	21.05	23.53
VIT_14s0081g00110.t01	Wine grape	cytosol	26.32	23.42
VIT_14s0081g00280.t01	Wine grape	mitochondrion	34.1	23.32
KRH38755	Soybean	mitochondrion	31.58	23.23
KRH49698	Soybean	cytosol	30.21	23.16
Solyc06g007810.1.1	Tomato	cytosol	14.19	23.13
KRH42744	Soybean	mitochondrion	32.27	23.08
KRH58843	Soybean	nucleus	32.27	23.08
KRH70370	Soybean	cytosol	28.6	22.98
PGSC0003DMT400008757	Potato	cytosol	26.09	22.89
PGSC0003DMT400053556	Potato	mitochondrion	24.03	22.88
PGSC0003DMT400025087	Potato	endoplasmic reticulum	25.17	22.22
Solyc06g007280.2.1	Tomato	cytosol	12.81	21.96
PGSC0003DMT400053185	Potato	mitochondrion	29.52	21.86
PGSC0003DMT400052977	Potato	cytosol	19.45	21.85
Solyc06g007300.1.1	Tomato	extracellular	29.52	21.79
PGSC0003DMT400052971	Potato	mitochondrion	29.52	21.75
Solyc06g007740.1.1	Tomato	cytosol	29.29	21.69
KRH75045	Soybean	mitochondrion	29.52	21.61
PGSC0003DMT400056663	Potato	plastid	29.06	21.6
PGSC0003DMT400025074	Potato	cytosol	27.23	21.56
KRH75048	Soybean	mitochondrion	29.98	21.55
VIT_14s0030g02260.t01	Wine grape	cytosol	21.74	21.44
PGSC0003DMT400056665	Potato	mitochondrion	28.6	21.22
CDX68680	Canola	mitochondrion	22.43	21.21
KRH75063	Soybean	mitochondrion, plastid	29.06	21.03
PGSC0003DMT400025067	Potato	cytosol	22.88	21.01
PGSC0003DMT400008760	Potato	mitochondrion	28.15	20.99
Solyc06g005220.2.1	Tomato	cytosol	19.22	20.69
CDY16033	Canola	cytosol	7.09	20.67
CDY34370	Canola	cytosol	38.67	20.58
PGSC0003DMT400053182	Potato	cytosol	27.46	20.03
CDX81633	Canola	extracellular, golgi, plasma membrane	40.96	19.69
PGSC0003DMT400015298	Potato	mitochondrion	27.23	19.51
PGSC0003DMT400015293	Potato	mitochondrion	27.23	19.51
CDX68679	Canola	cytosol	5.03	19.13
CDY26589	Canola	cytosol	2.97	18.84
Solyc04g080120.1.1	Tomato	extracellular	26.32	18.79
CDY34680	Canola	cytosol	35.01	16.78
CDY31277	Canola	plastid	33.87	15.43
CDY15970	Canola	cytosol	2.97	13.83
CDY21063	Canola	plastid	3.2	2.55

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078IAB1	EnsemblPlants:CDY47835	ProteinID:CDY47835	ProteinID:CDY47835.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00088308001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1649
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EDB49F	SEG:seg

Description

BnaA09g12140DBnaA09g12140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IAB1]

Coordinates

chrLK032740:+:25061..26578

Molecular Weight (calculated)

49094.4 Da

IEP (calculated)

9.198

GRAVY (calculated)

-0.039

Length

437 amino acids

Sequence
(BLAST)

001: MHRSLSIATK WFLRRRGDPP PLSRPFSGNR RERLATASLH SINFDDALSL FCEMLHSRPL PTILDFTRVL TAIAKTNKHH DAVVYLCRKM EALGISHDLY
101: TFTILIHCLC RCSRLSLALS VLAKMTKLGI EPSVVTLGSL LNGFCRGSKL REALSLSLTP WGVNLTSSFT TPSGRWSEAA RLVRDMIKRR KLDPNVVFYS
201: GMIHVFVKEG NLFEAVNLYK EMIRRSVDPN VFTYNSLING LCVDGRLGEA KRMFDSMSCS PDLVTYNTLI KGFCKSKRVE DGMRLLCEMA REGIVGDAFT
301: YNTLIHGYCQ AGKLSVALKV FGRMVDCGVA PDVVTYNVLL DCLCSKGKVE NAMVMVEEME KRDILALKGV KPDAIAYRTM ISGLSREGRR READKLCRKM
401: KEDGIIMPIK CIHNDETLGD NHYTSSSLAE FIKVIHE

Best Arabidopsis Sequence Match ( AT1G06580.1 )
(BLAST)

001: MRRSIVIVIA LTAKGFLHRH LLEKGNLVTA LSLRICNSRA FSGRSDYRER LRSGLHSIKF NDALTLFCDM AESHPLPSIV DFSRLLIAIA KLNKYEAVIS
101: LFRHLEMLGI SHDLYSFTTL IDCFCRCARL SLALSCLGKM MKLGFEPSIV TFGSLVNGFC HVNRFYEAMS LVDQIVGLGY EPNVVIYNTI IDSLCEKGQV
201: NTALDVLKHM KKMGIRPDVV TYNSLITRLF HSGTWGVSAR ILSDMMRMGI SPDVITFSAL IDVYGKEGQL LEAKKQYNEM IQRSVNPNIV TYNSLINGLC
301: IHGLLDEAKK VLNVLVSKGF FPNAVTYNTL INGYCKAKRV DDGMKILCVM SRDGVDGDTF TYNTLYQGYC QAGKFSAAEK VLGRMVSCGV HPDMYTFNIL
401: LDGLCDHGKI GKALVRLEDL QKSKTVVGII TYNIIIKGLC KADKVEDAWY LFCSLALKGV SPDVITYITM MIGLRRKRLW REAHELYRKM QKEDGLMPIK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g06580 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHK2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.